Reps1 (RALBP1 associated Eps domain containing 1) - Rat Genome Database

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Gene: Reps1 (RALBP1 associated Eps domain containing 1) Ictidomys tridecemlineatus
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Symbol: Reps1
Name: RALBP1 associated Eps domain containing 1
RGD ID: 12464010
Description: ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); SH3 domain binding (inferred); INVOLVED IN endocytosis (inferred); endosomal transport (inferred); ASSOCIATED WITH Familial Behcet-Like Autoinflammatory Syndrome (ortholog); neurodegeneration with brain iron accumulation (ortholog); Neurodegeneration with Brain Iron Accumulation 7 (ortholog); FOUND IN clathrin-coated pit (inferred); cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ralBP1-associated Eps domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946126,201,811 - 126,277,843 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365605,981,244 - 6,056,984 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365605,981,037 - 6,057,059 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Reps1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946126,201,811 - 126,277,843 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365605,981,244 - 6,056,984 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365605,981,037 - 6,057,059 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
REPS1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386138,903,493 - 138,988,253 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6138,903,493 - 138,988,261 (-)EnsemblGRCh38hg38GRCh38
GRCh376139,224,630 - 139,309,390 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366139,267,313 - 139,351,091 (-)NCBINCBI36Build 36hg18NCBI36
Build 346139,267,313 - 139,351,091NCBI
Celera6139,965,691 - 140,049,451 (-)NCBICelera
Cytogenetic Map6q24.1NCBI
HuRef6136,787,266 - 136,871,047 (-)NCBIHuRef
CHM1_16139,488,602 - 139,572,395 (-)NCBICHM1_1
T2T-CHM13v2.06140,092,038 - 140,176,789 (-)NCBIT2T-CHM13v2.0
Reps1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391017,931,301 - 18,000,892 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1017,931,609 - 18,000,903 (+)EnsemblGRCm39 Ensembl
GRCm381018,055,562 - 18,125,155 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1018,055,861 - 18,125,155 (+)EnsemblGRCm38mm10GRCm38
MGSCv371017,775,746 - 17,844,961 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361017,778,867 - 17,814,549 (+)NCBIMGSCv36mm8
Celera1017,953,437 - 18,023,302 (+)NCBICelera
Cytogenetic Map10A3NCBI
cM Map107.42NCBI
Reps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8114,517,589 - 14,595,404 (+)NCBIGRCr8
mRatBN7.2112,697,742 - 12,775,562 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl112,697,747 - 12,775,561 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx112,470,060 - 12,547,376 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0118,471,983 - 18,549,304 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0112,678,445 - 12,755,890 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0113,262,049 - 13,298,347 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl113,212,324 - 13,298,347 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0114,951,280 - 14,987,342 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4113,106,941 - 13,185,314 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1113,107,016 - 13,185,397 (+)NCBI
Celera111,155,459 - 11,232,735 (+)NCBICelera
Cytogenetic Map1p12NCBI
Reps1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543620,713,655 - 20,752,842 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543620,677,676 - 20,752,842 (+)NCBIChiLan1.0ChiLan1.0
REPS1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25158,869,061 - 158,954,362 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16156,766,657 - 156,849,719 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06136,662,837 - 136,748,743 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16140,748,143 - 140,830,499 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6140,748,309 - 140,830,499 (-)Ensemblpanpan1.1panPan2
REPS1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1131,141,321 - 31,200,200 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl131,141,258 - 31,181,542 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha132,014,739 - 32,097,965 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0131,302,116 - 31,385,526 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl131,302,829 - 31,386,098 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1131,178,496 - 31,261,768 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0131,060,739 - 31,143,891 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0131,371,790 - 31,455,091 (-)NCBIUU_Cfam_GSD_1.0
REPS1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl125,481,343 - 25,565,277 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1125,481,283 - 25,565,284 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2128,641,932 - 28,700,509 (+)NCBISscrofa10.2Sscrofa10.2susScr3
REPS1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11334,402,172 - 34,488,994 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1334,402,127 - 34,491,919 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660406,546,231 - 6,658,055 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Reps1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475314,970,706 - 15,057,037 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475314,970,693 - 15,057,033 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000000923   ⟹   ENSSTOP00000000827
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365605,981,244 - 6,056,984 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000026558   ⟹   ENSSTOP00000020965
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365605,981,244 - 6,056,984 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000038402   ⟹   ENSSTOP00000024140
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365605,981,244 - 6,056,984 (-)Ensembl
RefSeq Acc Id: XM_040282063   ⟹   XP_040137997
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404946126,201,811 - 126,277,843 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040137997 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000000827.3
  ENSSTOP00000020965.2
  ENSSTOP00000024140.1
GenBank Protein KAG3290357 (Get FASTA)   NCBI Sequence Viewer  
  KAG3290358 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040137997   ⟸   XM_040282063
- UniProtKB: I3N9B9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000024140   ⟸   ENSSTOT00000038402
Ensembl Acc Id: ENSSTOP00000020965   ⟸   ENSSTOT00000026558
Ensembl Acc Id: ENSSTOP00000000827   ⟸   ENSSTOT00000000923
Protein Domains
EF-hand   EH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000000920 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000000923.3 UniProtKB/TrEMBL
  ENSSTOT00000026558.2 UniProtKB/TrEMBL
  ENSSTOT00000038402.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  EH_dom UniProtKB/TrEMBL
NCBI Gene Reps1 ENTREZGENE
PANTHER EH DOMAIN UniProtKB/TrEMBL
  PTHR11216:SF63 UniProtKB/TrEMBL
Pfam EF-hand_4 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  PS50031 UniProtKB/TrEMBL
SMART SM00027 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A287CS34_ICTTR UniProtKB/TrEMBL
  I3LXL4_ICTTR UniProtKB/TrEMBL
  I3N9B9 ENTREZGENE, UniProtKB/TrEMBL