Adgrg1 (adhesion G protein-coupled receptor G1) - Rat Genome Database

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Gene: Adgrg1 (adhesion G protein-coupled receptor G1) Ictidomys tridecemlineatus
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Symbol: Adgrg1
Name: adhesion G protein-coupled receptor G1
RGD ID: 12454055
Description: ENCODES a protein that exhibits collagen binding (inferred); extracellular matrix binding (inferred); G protein-coupled receptor activity (inferred); INVOLVED IN cerebral cortex regionalization (ortholog); hematopoietic stem cell homeostasis (ortholog); neural precursor cell proliferation (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); bilateral frontoparietal polymicrogyria (ortholog); bilateral perisylvian polymicrogyria (ortholog); FOUND IN extracellular region (inferred); glial limiting end-foot (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: adhesion G-protein coupled receptor G1; G protein-coupled receptor 56; G-protein coupled receptor 56; Gpr56
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934949,905,813 - 49,935,816 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,671,868 - 9,681,988 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,653,233 - 9,683,258 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Adgrg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934949,905,813 - 49,935,816 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,671,868 - 9,681,988 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,653,233 - 9,683,258 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADGRG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381657,619,738 - 57,665,567 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1657,610,652 - 57,665,580 (+)EnsemblGRCh38hg38GRCh38
GRCh371657,653,650 - 57,699,479 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361656,211,459 - 56,256,445 (+)NCBINCBI36Build 36hg18NCBI36
Build 341656,220,022 - 56,256,438NCBI
Celera1642,155,129 - 42,200,163 (+)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1643,521,500 - 43,566,585 (+)NCBIHuRef
CHM1_11659,061,969 - 59,107,000 (+)NCBICHM1_1
T2T-CHM13v2.01663,414,941 - 63,460,767 (+)NCBIT2T-CHM13v2.0
Adgrg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,701,321 - 95,740,836 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,701,379 - 95,740,845 (+)EnsemblGRCm39 Ensembl
GRCm38894,974,756 - 95,014,208 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,974,751 - 95,014,217 (+)EnsemblGRCm38mm10GRCm38
MGSCv37897,508,503 - 97,538,091 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,873,732 - 97,903,320 (+)NCBIMGSCv36mm8
Celera899,309,115 - 99,341,094 (+)NCBICelera
Cytogenetic Map8C5NCBI
cM Map847.12NCBI
Adgrg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,009,983 - 10,047,138 (-)NCBIGRCr8
mRatBN7.21910,003,963 - 10,041,122 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,003,975 - 10,041,108 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx199,968,201 - 10,005,273 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,735,039 - 10,772,116 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,021,858 - 10,058,994 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,423,534 - 10,460,674 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,423,501 - 10,460,674 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01910,403,001 - 10,442,286 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,438,332 - 10,475,607 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11910,443,185 - 10,480,433 (-)NCBI
Celera199,891,471 - 9,928,021 (-)NCBICelera
Cytogenetic Map19p13NCBI
Adgrg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543315,259,720 - 15,289,151 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543315,253,196 - 15,288,982 (+)NCBIChiLan1.0ChiLan1.0
ADGRG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21867,090,347 - 67,136,251 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11673,011,226 - 73,057,121 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,896,177 - 37,942,040 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11657,027,946 - 57,074,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1657,036,425 - 57,074,221 (+)Ensemblpanpan1.1panPan2
ADGRG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1258,805,737 - 58,842,618 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl258,805,834 - 58,852,684 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha255,435,490 - 55,472,410 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,344,120 - 59,381,257 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,344,129 - 59,381,633 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,175,783 - 56,212,651 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,183,275 - 57,220,434 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,076,631 - 58,113,771 (-)NCBIUU_Cfam_GSD_1.0
ADGRG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl619,527,648 - 19,570,893 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1619,523,618 - 19,570,891 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2617,648,674 - 17,671,453 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ADGRG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,559,792 - 43,595,906 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl543,570,189 - 43,596,087 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604732,602,512 - 32,646,023 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Adgrg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,436,895 - 28,476,926 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474628,439,855 - 28,476,551 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013366342 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000004192   ⟹   ENSSTOP00000003765
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364759,671,868 - 9,681,988 (+)Ensembl
RefSeq Acc Id: XM_013366342   ⟹   XP_013221796
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934949,905,813 - 49,935,816 (-)NCBI
SpeTri2.0NW_0049364759,653,233 - 9,683,258 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013221796 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000003765.3
GenBank Protein KAG3257199 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_013221796   ⟸   XM_013366342
- UniProtKB: I3M3S3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000003765   ⟸   ENSSTOT00000004192

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000004173 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000004192.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.220.50 UniProtKB/TrEMBL
  Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GAIN_A UniProtKB/TrEMBL
  GAIN_dom_sf UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/TrEMBL
  GPR1/GPR3/GPR5 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  PLL UniProtKB/TrEMBL
NCBI Gene Adgrg1 ENTREZGENE
PANTHER ADHESION G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  ADHESION G-PROTEIN COUPLED RECEPTOR G1 UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/TrEMBL
  GAIN_A UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
  PLL UniProtKB/TrEMBL
PRINTS GPCRSECRETIN UniProtKB/TrEMBL
  GPR56ORPHANR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F2_4 UniProtKB/TrEMBL
  GPS UniProtKB/TrEMBL
SMART GPS UniProtKB/TrEMBL
UniProt I3M3S3 ENTREZGENE, UniProtKB/TrEMBL