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Gene: Znf622 (zinc finger protein 622) Ictidomys tridecemlineatus

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Symbol:

Znf622

Name:

zinc finger protein 622

RGD ID:

12450574

Description:

ENCODES a protein that exhibits metal ion binding (inferred); nucleic acid binding (inferred); preribosome binding (inferred); INVOLVED IN positive regulation of kinase activity (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); Golgi apparatus (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	210,156,464 - 210,171,924 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	19,091,502 - 19,108,990 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	19,092,959 - 19,108,418 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Neurodevelopmental Disorders (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intrinsic apoptotic signaling pathway in response to oxidative stress (IEA)

positive regulation of apoptotic process (IEA)

positive regulation of JNK cascade (IEA)

positive regulation of kinase activity (ISO)

positive regulation of MAPK cascade (IEA)

ribosomal large subunit biogenesis (IEA)

ribosome biogenesis (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

Golgi apparatus (IEA)

nucleolus (IEA)

nucleoplasm (IEA)

nucleus (IEA)

preribosome, large subunit precursor (IEA)

Molecular Function

metal ion binding (IEA)

nucleic acid binding (IEA)

preribosome binding (IEA)

protein binding (ISO)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Znf622
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	210,156,464 - 210,171,924 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936480	19,091,502 - 19,108,990 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936480	19,092,959 - 19,108,418 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF622
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	16,451,519 - 16,465,800 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	16,451,519 - 16,465,800 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	16,451,628 - 16,465,909 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	16,504,628 - 16,518,894 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	5	16,504,628 - 16,518,894	NCBI
Celera	5	16,475,243 - 16,489,513 (-)	NCBI		Celera
Cytogenetic Map	5	p15.1	NCBI
HuRef	5	16,423,532 - 16,437,805 (-)	NCBI		HuRef
CHM1_1	5	16,451,589 - 16,465,842 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	5	16,390,866 - 16,405,145 (-)	NCBI		T2T-CHM13v2.0

Zfp622
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	25,984,452 - 25,998,568 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	25,984,452 - 25,998,567 (+)	Ensembl		GRCm39 Ensembl
GRCm38	15	25,984,366 - 25,998,482 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	25,984,366 - 25,998,481 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	15	25,914,121 - 25,928,237 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	15	25,929,091 - 25,943,207 (+)	NCBI		MGSCv36	mm8
Celera	15	26,755,941 - 26,770,057 (+)	NCBI		Celera
Cytogenetic Map	15	B1	NCBI
cM Map	15	9.71	NCBI

Zfp622
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	78,205,655 - 78,224,888 (+)	NCBI		GRCr8
mRatBN7.2	2	76,479,605 - 76,494,405 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	76,335,609 - 76,493,898 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	83,600,813 - 83,614,642 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	81,722,535 - 81,736,364 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	76,727,805 - 76,741,608 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	78,407,312 - 78,421,152 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	78,407,414 - 78,421,024 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	2	78,103,387 - 78,276,927 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	97,978,551 - 97,992,642 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	77,571,866 - 77,585,706 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	77,500,100 - 77,513,940 (+)	NCBI
Celera	2	72,188,230 - 72,202,089 (+)	NCBI		Celera
Cytogenetic Map	2	q22	NCBI

Znf622
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955426	5,553,610 - 5,568,646 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955426	5,554,655 - 5,569,067 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF622
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	16,683,369 - 16,700,985 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	14,836,979 - 14,854,595 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	16,753,135 - 16,767,378 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	16,591,135 - 16,605,842 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	16,591,135 - 16,605,842 (-)	Ensembl	panpan1.1		panPan2

ZNF622
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	86,929,947 - 86,943,711 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	86,826,892 - 86,951,542 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	86,447,527 - 86,461,291 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	87,567,057 - 87,580,819 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	87,442,238 - 87,587,920 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	87,089,290 - 87,103,023 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	87,326,254 - 87,340,001 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	88,183,313 - 88,197,085 (+)	NCBI		UU_Cfam_GSD_1.0

ZNF622
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	16	5,699,744 - 5,714,516 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	16	5,699,740 - 5,714,824 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	16	6,144,037 - 6,159,117 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZNF622
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	4	16,131,215 - 16,145,763 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	4	16,127,777 - 16,145,777 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666064	12,333,090 - 12,348,421 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf622
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624751	13,358,276 - 13,374,239 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624751	13,361,474 - 13,374,398 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005319667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010002273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000000621 ⟹ ENSSTOP00000000566

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936480	19,091,502 - 19,108,990 (-)	Ensembl

RefSeq Acc Id:

XM_005319667 ⟹ XP_005319724

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024407213	210,156,464 - 210,171,924 (-)	NCBI
SpeTri2.0	NW_004936480	19,092,959 - 19,108,418 (-)	NCBI

Sequence:

show sequence

TTACCTCAGTGAGAAACAGGAAGTCGGAGCGCCGAGCCTGTCTTCCTAGATCTGCGTAAGGCTA
ATCGCTAGCGGACTGTGGGACCGGAACGCTAATCGTTAGATTCTTGGCTAGGTCGCCTCTTGTT
TCTCGCCTGGCCATGGCGACATACACCTGCATCACCTGTCGGGTGGCGTTCCGCGACGCGGAGA
TGCAGCGGGCCCACTACAAAACGGACTGGCACCGCTACAACCTGCGGCGAAAAGTGGCCAACAT
GGCTCCGGTCACTGCCGAAGGCTTCCAGGAGCGAGTGCGGGCGCAGCGGGCCGTGGCAGAGGAG
GAGAGCAAGGGCACGGCCACCTACTGCACTGTCTGCAGTAAGAAATTCGCCTCCTTCAACGCCT
ACGAAAATCACCTCAAGTCCCGGCGGCATGTGGAGCTGGAGAAGAAGGCGGTGCAGGCTGTGAA
TCGGAAAGTGGAAATGATGAACGAGAAGAACCTGGAGAAGGGGCTAGACGTGGACAGTGTGGAC
AAGGACGCCATGAACGCGGCCATCCAGCAGGCCATCAAGGCCCAGCCGTCCACGTCTCCCAAGA
AGGTGTCCACAGAGGAGTTCCGGAGTGCGGTGGCCGTCGCTGCGGGTGGACGTGGAACTCACGA
CCGAGACCCGGCGGAGAAACCGCCCCGGCTCCAGTGGTTTGAACAGCAGGCGAAGAAACTGGCC
AAGCAGCAGGGCGGAGAGAGTGAGGAGGAGGAAGAAGAGGAGGAGGACCTGGATGGAGAAGATT
GGGAAGATATTGATTCTGATGAAGAATTGGAATGTGAGGATACTGAAGTGATGGACGACACGGA
GGAGCAGGATGCAGATGAGGAAGAAGCTGGGCATAGCCCACCCCTAGGTGCCATCCCAGTTACG
GACTGCTTATTTTGTCCCCATCATTCAAGTTCCCTCATGAAGAATGTGGCTCATATGACTAAAG
TCCACAGCTTTTTTATTCCTGATATAGAGTATCTTTCAGACCTTAAGGGTCTGATAAAATATTT
AGGAGAGAAAGTTGGTGTTGGGAAGATTTGCTTGTGGTGCAATGAGAAAGGGAAATCCTTCTAC
TCCACAGAAGCTGTACAGGCACATATGAACGACAAAAGCCACTGTAAGCTTTTCACAGATGGTG
ATGCTGCTTTGGAATTTGCAGACTTCTATGATTTTAGGAGCAGCTACCCAGATCACATGGAAGG
GGAGGACCCCAATGAGGCTGAGGAGTTACCCTCAGAAAAGAACTTGGAATATGACGATGAAACT
ATGGAGCTGATTCTGCCTTCTGGTGCCAGAGTTGGTCATCGCTCCTTGATGAGATACTACAAAC
AGCGATTTGGCTTGCCAAGAGCTGTGGCAGTTGCTAAAAATCAGAAGGCTGTGGGCAGGGTACT
CCAACAGTACCGAGCCCTAGGGTGGACTGGCAGCACAGGAGCAGCTCTTATGCGAGAGCGGGAC
ATGCAGTATGTCCAAAGGATGAAATCAAAATGGATGCTGAAGACAGGAATGAAGAACAATGCCA
CCAAGCAAATGCACTTTAGGGCCCAAGTGAGATTCTGAGAGTCTGCTGGATTGAGTGATTGTCT
CCTGCTCGAGTTTCTTCCTTGCCGGAGGACCAATGGAATCTGGCTTGTGGGATACACCCTTTTG
CTGCTACTTCACTTGTTCTGACCTAATAATAAAATCATACTCATGTTGATTTTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005319724	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000000566.3
GenBank Protein	KAG3266744	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005319724 ⟸ XM_005319667

- UniProtKB:

I3LX22 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MATYTCITCRVAFRDAEMQRAHYKTDWHRYNLRRKVANMAPVTAEGFQERVRAQRAVAEEESKG
TATYCTVCSKKFASFNAYENHLKSRRHVELEKKAVQAVNRKVEMMNEKNLEKGLDVDSVDKDAM
NAAIQQAIKAQPSTSPKKVSTEEFRSAVAVAAGGRGTHDRDPAEKPPRLQWFEQQAKKLAKQQG
GESEEEEEEEEDLDGEDWEDIDSDEELECEDTEVMDDTEEQDADEEEAGHSPPLGAIPVTDCLF
CPHHSSSLMKNVAHMTKVHSFFIPDIEYLSDLKGLIKYLGEKVGVGKICLWCNEKGKSFYSTEA
VQAHMNDKSHCKLFTDGDAALEFADFYDFRSSYPDHMEGEDPNEAEELPSEKNLEYDDETMELI
LPSGARVGHRSLMRYYKQRFGLPRAVAVAKNQKAVGRVLQQYRALGWTGSTGAALMRERDMQYV
QRMKSKWMLKTGMKNNATKQMHFRAQVRF

hide sequence

Ensembl Acc Id:

ENSSTOP00000000566 ⟸ ENSSTOT00000000621

Protein Domains

C2H2-type

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000000623	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000000621.3	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Matrin/U1-like-C_Znf_C2H2	UniProtKB/TrEMBL
	ZN622/Rei1/Reh1_Znf-C2H2	UniProtKB/TrEMBL
	Znf622/Rei1/Reh1	UniProtKB/TrEMBL
	Znf_C2H2_jaz	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	Znf622	ENTREZGENE
PANTHER	PTHR13182	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 622	UniProtKB/TrEMBL
Pfam	zf-C2H2_2	UniProtKB/TrEMBL
	zf-C2H2_jaz	UniProtKB/TrEMBL
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
SMART	ZnF_C2H2	UniProtKB/TrEMBL
	ZnF_U1	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	I3LX22	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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