S1PR4 (sphingosine-1-phosphate receptor 4) - Rat Genome Database

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Gene: S1PR4 (sphingosine-1-phosphate receptor 4) Canis lupus familiaris
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Symbol: S1PR4
Name: sphingosine-1-phosphate receptor 4
RGD ID: 12429215
Description: ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); sphingosine-1-phosphate receptor activity (inferred); INVOLVED IN adenylate cyclase-activating G protein-coupled receptor signaling pathway (ortholog); PARTICIPATES IN sphingosine 1-phosphate signaling pathway; ASSOCIATED WITH Experimental Diabetes Mellitus (ortholog); Neurodevelopmental Disorders (ortholog); RASopathy (ortholog); FOUND IN presynapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: EDG6; endothelial differentiation, lysophosphatidic acid G-protein-coupled receptor, 6; sphingosine 1-phosphate receptor 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12056,108,967 - 56,110,281 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2056,109,058 - 56,110,209 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2055,832,774 - 55,834,110 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02056,767,353 - 56,768,955 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2056,767,763 - 56,768,914 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12055,823,018 - 55,824,354 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02056,307,095 - 56,308,431 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02056,505,855 - 56,507,191 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
mitochondrion  (IEA)
plasma membrane  (IEA)
presynapse  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
S1PR4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12056,108,967 - 56,110,281 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2056,109,058 - 56,110,209 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2055,832,774 - 55,834,110 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02056,767,353 - 56,768,955 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2056,767,763 - 56,768,914 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12055,823,018 - 55,824,354 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02056,307,095 - 56,308,431 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02056,505,855 - 56,507,191 (-)NCBIUU_Cfam_GSD_1.0
S1PR4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,178,769 - 3,180,332 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,172,346 - 3,180,332 (+)EnsemblGRCh38hg38GRCh38
GRCh37193,178,767 - 3,180,330 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,129,766 - 3,131,330 (+)NCBINCBI36Build 36hg18NCBI36
Build 34193,129,769 - 3,131,329NCBI
Celera193,115,117 - 3,116,711 (+)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef192,945,831 - 2,947,425 (+)NCBIHuRef
CHM1_1193,177,385 - 3,178,979 (+)NCBICHM1_1
T2T-CHM13v2.0193,153,597 - 3,155,160 (+)NCBIT2T-CHM13v2.0
S1pr4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391081,333,579 - 81,335,971 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1081,333,581 - 81,335,966 (-)EnsemblGRCm39 Ensembl
GRCm381081,497,745 - 81,500,137 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1081,497,747 - 81,500,132 (-)EnsemblGRCm38mm10GRCm38
MGSCv371080,960,490 - 80,962,882 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361080,901,607 - 80,903,266 (-)NCBIMGSCv36mm8
Celera1082,521,128 - 82,523,520 (-)NCBICelera
Cytogenetic Map10C1NCBI
cM Map1039.72NCBI
S1pr4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr878,858,528 - 8,860,804 (+)NCBIGRCr8
mRatBN7.278,207,767 - 8,210,043 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl78,208,098 - 8,211,893 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx711,093,800 - 11,096,076 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0712,969,283 - 12,971,559 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0710,836,403 - 10,838,679 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0711,077,411 - 11,079,687 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl711,077,411 - 11,079,687 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0711,244,600 - 11,246,876 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.479,691,709 - 9,693,985 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.179,692,102 - 9,693,986 (+)NCBI
Celera76,398,295 - 6,400,571 (+)NCBICelera
Cytogenetic Map7q11NCBI
S1pr4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554955,244,696 - 5,245,862 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554955,243,797 - 5,247,649 (-)NCBIChiLan1.0ChiLan1.0
S1PR4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2207,574,296 - 7,580,347 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,807,547 - 6,813,592 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0192,204,305 - 2,206,243 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1193,158,932 - 3,160,526 (+)NCBIpanpan1.1PanPan1.1panPan2
S1pr4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118216,011,722 - 216,013,083 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365881,821,721 - 1,822,872 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365881,821,654 - 1,822,872 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S1PR4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl275,394,740 - 75,398,169 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1275,394,737 - 75,399,914 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2275,913,339 - 75,917,098 (-)NCBISscrofa10.2Sscrofa10.2susScr3
S1PR4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.162,941,446 - 2,943,452 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl62,941,901 - 2,943,055 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660815,637,197 - 5,640,577 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
S1pr4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248286,039,778 - 6,040,941 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248286,038,527 - 6,041,024 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in S1PR4
8 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 4 21 22 16 6 6 6 6 29 18 10 8 10

Sequence


Ensembl Acc Id: ENSCAFT00000030604   ⟹   ENSCAFP00000028441
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2056,109,058 - 56,110,209 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845018248   ⟹   ENSCAFP00845014234
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2056,767,763 - 56,768,914 (-)Ensembl
RefSeq Acc Id: XM_038429179   ⟹   XP_038285107
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02056,767,353 - 56,768,955 (-)NCBI
RefSeq Acc Id: XM_038504717   ⟹   XP_038360645
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12055,823,018 - 55,824,354 (-)NCBI
RefSeq Acc Id: XM_038567852   ⟹   XP_038423780
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02056,505,855 - 56,507,191 (-)NCBI
RefSeq Acc Id: XM_038631977   ⟹   XP_038487905
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02056,307,095 - 56,308,431 (-)NCBI
RefSeq Acc Id: XM_849809   ⟹   XP_854902
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12056,108,967 - 56,110,281 (-)NCBI
Dog10K_Boxer_Tasha2055,832,774 - 55,834,110 (-)NCBI
Sequence:
RefSeq Acc Id: XP_854902   ⟸   XM_849809
- UniProtKB: A0A8C0REW1 (UniProtKB/TrEMBL),   A0A8I3NR19 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000028441   ⟸   ENSCAFT00000030604
RefSeq Acc Id: XP_038360645   ⟸   XM_038504717
RefSeq Acc Id: XP_038487905   ⟸   XM_038631977
RefSeq Acc Id: XP_038285107   ⟸   XM_038429179
- UniProtKB: A0A8C0REW1 (UniProtKB/TrEMBL),   A0A8I3NR19 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038423780   ⟸   XM_038567852
- UniProtKB: A0A8C0REW1 (UniProtKB/TrEMBL),   A0A8I3NR19 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845014234   ⟸   ENSCAFT00845018248

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019278 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030007504 UniProtKB/TrEMBL
  ENSCAFG00040009015 UniProtKB/TrEMBL
  ENSCAFG00845010367 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000030604.5 UniProtKB/TrEMBL
  ENSCAFT00030013723.1 UniProtKB/TrEMBL
  ENSCAFT00040016728.1 UniProtKB/TrEMBL
  ENSCAFT00845018248 ENTREZGENE
  ENSCAFT00845018248.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro EDG6_rcpt UniProtKB/TrEMBL
  GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  S1P_rcpt UniProtKB/TrEMBL
KEGG Report cfa:612082 UniProtKB/TrEMBL
NCBI Gene S1PR4 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  PTHR22750:SF13 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS EDG6RECEPTOR UniProtKB/TrEMBL
  GPCRRHODOPSN UniProtKB/TrEMBL
  S1PRECEPTOR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0REW1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NR19 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:110551 ENTREZGENE