LOC100687756 (transformer-2 protein homolog beta-like) - Rat Genome Database

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Gene: LOC100687756 (transformer-2 protein homolog beta-like) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC100687756
Name: transformer-2 protein homolog beta-like
RGD ID: 12413931
Description: ENCODES a protein that exhibits RNA binding (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transformer-2 protein homolog beta pseudogene
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12042,198,746 - 42,200,101 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2042,114,705 - 42,116,099 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02042,681,098 - 42,682,407 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12041,922,471 - 41,923,735 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02042,323,775 - 42,325,146 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02042,604,642 - 42,606,031 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
RNA binding  (IBA,IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100687756
20 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_038427984   ⟹   XP_038283912
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02042,681,098 - 42,682,407 (+)NCBI
RefSeq Acc Id: XM_038455624   ⟹   XP_038311552
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2042,114,705 - 42,116,099 (+)NCBI
RefSeq Acc Id: XM_038503639   ⟹   XP_038359567
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12041,922,471 - 41,923,735 (+)NCBI
RefSeq Acc Id: XM_038566664   ⟹   XP_038422592
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02042,604,642 - 42,606,031 (+)NCBI
RefSeq Acc Id: XM_038630807   ⟹   XP_038486735
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02042,323,775 - 42,325,146 (+)NCBI
RefSeq Acc Id: XP_038359567   ⟸   XM_038503639
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038486735   ⟸   XM_038630807
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038283912   ⟸   XM_038427984
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NKI1 (UniProtKB/TrEMBL),   A0A8P0T454 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038311552   ⟸   XM_038455624
- Peptide Label: isoform X1
- UniProtKB: A0A8I3NKI1 (UniProtKB/TrEMBL),   A0A8P0T454 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038422592   ⟸   XM_038566664
- Peptide Label: isoform X1
Protein Domains
RRM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000043960 UniProtKB/TrEMBL
  ENSCAFG00030007005 UniProtKB/TrEMBL
  ENSCAFG00040025348 UniProtKB/TrEMBL
  ENSCAFG00845011888 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000079977.2 UniProtKB/TrEMBL
  ENSCAFT00030012928.1 UniProtKB/TrEMBL
  ENSCAFT00030012995.1 UniProtKB/TrEMBL
  ENSCAFT00040047290.1 UniProtKB/TrEMBL
  ENSCAFT00845021103 ENTREZGENE
  ENSCAFT00845021103.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RBM UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
NCBI Gene LOC100687756 ENTREZGENE
PANTHER TRANSFORMER-2 PROTEIN HOMOLOG BETA UniProtKB/TrEMBL
  TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
UniProt A0A8C0MPC8_CANLF UniProtKB/TrEMBL
  A0A8C0TTZ8_CANLF UniProtKB/TrEMBL
  A0A8I3NKI1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T454 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC100687756  transformer-2 protein homolog beta-like  LOC100687756  transformer-2 protein homolog beta pseudogene  Symbol and/or name change 5135510 APPROVED