H3-3B (H3.3 histone B) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: H3-3B (H3.3 histone B) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: H3-3B (Ensembl: GALK1)
Name: H3.3 histone B (Ensembl:galactokinase 1)
RGD ID: 12413003
Description: ENCODES a protein that exhibits ATP binding (inferred); DNA binding (inferred); galactokinase activity (inferred); INVOLVED IN carbohydrate phosphorylation (inferred); galactitol metabolic process (inferred); galactose catabolic process via UDP-galactose (inferred); FOUND IN chromosome (inferred); cytoplasm (inferred); nucleosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: H3 histone, family 3B; H3F3B; histone H3.3; histone H3.3A; LOC475916
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.194,805,655 - 4,808,076 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl94,805,650 - 4,833,503 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha95,485,743 - 5,488,166 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.095,476,038 - 5,478,463 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl95,476,066 - 5,495,203 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.195,515,517 - 5,517,940 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.095,625,569 - 5,627,995 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.095,686,464 - 5,688,887 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
chromosome  (IEA)
cytoplasm  (IEA)
nucleosome  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in H3-3B
39 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00845015667   ⟹   ENSCAFP00845012184
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl738,630,568 - 38,638,856 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845041991   ⟹   ENSCAFP00845032932
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl95,476,066 - 5,479,523 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845042041   ⟹   ENSCAFP00845032974
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl95,476,068 - 5,495,203 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845042109   ⟹   ENSCAFP00845033027
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl95,488,472 - 5,495,198 (+)Ensembl
RefSeq Acc Id: XM_038484894   ⟹   XP_038340822
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.195,515,517 - 5,517,940 (+)NCBI
RefSeq Acc Id: XM_038546578   ⟹   XP_038402506
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.095,686,464 - 5,688,887 (+)NCBI
RefSeq Acc Id: XM_038610573   ⟹   XP_038466501
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.095,625,569 - 5,627,995 (+)NCBI
RefSeq Acc Id: XM_038675700   ⟹   XP_038531628
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.095,476,038 - 5,478,463 (+)NCBI
RefSeq Acc Id: XM_853711   ⟹   XP_858804
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.194,805,655 - 4,808,076 (+)NCBI
Dog10K_Boxer_Tasha95,485,743 - 5,488,166 (+)NCBI
Sequence:
RefSeq Acc Id: XP_858804   ⟸   XM_853711
- UniProtKB: E2R6K5 (UniProtKB/TrEMBL),   A0A8C0LQ69 (UniProtKB/TrEMBL),   A0A8C0JQN2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038340822   ⟸   XM_038484894
RefSeq Acc Id: XP_038466501   ⟸   XM_038610573
RefSeq Acc Id: XP_038531628   ⟸   XM_038675700
- UniProtKB: A0A8C0LQ69 (UniProtKB/TrEMBL),   E2R6K5 (UniProtKB/TrEMBL),   A0A8C0JQN2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038402506   ⟸   XM_038546578
- UniProtKB: A0A8C0JQN2 (UniProtKB/TrEMBL),   A0A8C0LQ69 (UniProtKB/TrEMBL),   E2R6K5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845032974   ⟸   ENSCAFT00845042041
Ensembl Acc Id: ENSCAFP00845033027   ⟸   ENSCAFT00845042109
Ensembl Acc Id: ENSCAFP00845032932   ⟸   ENSCAFT00845041991
Ensembl Acc Id: ENSCAFP00845012184   ⟸   ENSCAFT00845015667
Protein Domains
Galactokinase N-terminal   GHMP kinase C-terminal   GHMP kinase N-terminal   Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000004914 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00000016119 UniProtKB/TrEMBL
  ENSCAFG00030000045 UniProtKB/TrEMBL
  ENSCAFG00030004811 UniProtKB/TrEMBL
  ENSCAFG00040002138 UniProtKB/TrEMBL
  ENSCAFG00040011794 UniProtKB/TrEMBL
  ENSCAFG00845008917 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00845023788 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000007903.5 UniProtKB/TrEMBL
  ENSCAFT00000044685.4 UniProtKB/TrEMBL
  ENSCAFT00000065230.2 UniProtKB/TrEMBL
  ENSCAFT00000107438.1 UniProtKB/TrEMBL
  ENSCAFT00030000025.1 UniProtKB/TrEMBL
  ENSCAFT00030008840.1 UniProtKB/TrEMBL
  ENSCAFT00030008864.1 UniProtKB/TrEMBL
  ENSCAFT00040004066.1 UniProtKB/TrEMBL
  ENSCAFT00040021732.1 UniProtKB/TrEMBL
  ENSCAFT00040021779.1 UniProtKB/TrEMBL
  ENSCAFT00845015667.1 UniProtKB/TrEMBL
  ENSCAFT00845041991 ENTREZGENE
  ENSCAFT00845041991.1 UniProtKB/TrEMBL
  ENSCAFT00845042041.1 UniProtKB/TrEMBL
  ENSCAFT00845042109.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
  3.30.230.10 UniProtKB/TrEMBL
  3.30.70.890 UniProtKB/TrEMBL
InterPro Galactokinase UniProtKB/TrEMBL
  Galactokinase_CS UniProtKB/TrEMBL
  GalKase_N UniProtKB/TrEMBL
  GHMP_kinase_C_dom UniProtKB/TrEMBL
  GHMP_kinase_C_sf UniProtKB/TrEMBL
  GHMP_kinase_N_dom UniProtKB/TrEMBL
  GHMP_knse_ATP-bd_CS UniProtKB/TrEMBL
  Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H3/CENP-A UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/TrEMBL
KEGG Report cfa:475916 UniProtKB/TrEMBL
  cfa:480110 UniProtKB/TrEMBL
NCBI Gene H3F3B ENTREZGENE
PANTHER GALACTOKINASE UniProtKB/TrEMBL
  HISTONE DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  HISTONE H3.3 UniProtKB/TrEMBL
  MEVALONATE KINASE/GALACTOKINASE UniProtKB/TrEMBL
  PTHR11426 UniProtKB/TrEMBL
Pfam GalKase_gal_bdg UniProtKB/TrEMBL
  GHMP_kinases_C UniProtKB/TrEMBL
  GHMP_kinases_N UniProtKB/TrEMBL
  Histone UniProtKB/TrEMBL
PRINTS GALCTOKINASE UniProtKB/TrEMBL
  HISTONEH3 UniProtKB/TrEMBL
  MEVGALKINASE UniProtKB/TrEMBL
PROSITE GALACTOKINASE UniProtKB/TrEMBL
  GHMP_KINASES_ATP UniProtKB/TrEMBL
  HISTONE_H3_1 UniProtKB/TrEMBL
  HISTONE_H3_2 UniProtKB/TrEMBL
SMART SM00428 UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
  SSF54211 UniProtKB/TrEMBL
  SSF55060 UniProtKB/TrEMBL
UniProt A0A8C0JQN2 ENTREZGENE
  A0A8C0LQ69 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0SCN5_CANLF UniProtKB/TrEMBL
  A0A8I3PKD4_CANLF UniProtKB/TrEMBL
  A0A8I3PNL4_CANLF UniProtKB/TrEMBL
  A0A8P0N7R6_CANLF UniProtKB/TrEMBL
  A0A8P0NVH9_CANLF UniProtKB/TrEMBL
  E2R6K5 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:83695 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-05 H3-3B  H3.3 histone B  LOC475916  histone H3.3  Symbol and/or name change 5135510 APPROVED
2017-09-12 LOC475916  histone H3.3  H3F3B  H3 histone, family 3B  Symbol and/or name change 5135510 APPROVED