Advanced Search (OLGA)

Gene: PKD1L3 (polycystin 1 like 3, transient receptor potential channel interacting) Canis lupus familiaris

Analyze

Symbol:

PKD1L3

Name:

polycystin 1 like 3, transient receptor potential channel interacting

RGD ID:

12389241

Description:

ENCODES a protein that exhibits calcium-activated cation channel activity (ortholog); monoatomic cation channel activity (ortholog); monoatomic cation transmembrane transporter activity (ortholog); INVOLVED IN calcium ion transmembrane transport (ortholog); cellular response to acidic pH (ortholog); detection of chemical stimulus involved in sensory perception of sour taste (ortholog); ASSOCIATED WITH autosomal dominant dyskeratosis congenita 6 (ortholog); genetic disease (ortholog); FOUND IN cation channel complex (ortholog); cell surface (ortholog); receptor complex (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

polycystic kidney disease protein 1-like 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	77,690,991 - 77,756,355 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	77,692,200 - 77,754,474 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	77,648,165 - 77,718,071 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	78,126,411 - 78,195,695 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	78,131,520 - 78,193,816 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	77,946,493 - 78,015,756 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	77,769,182 - 77,838,638 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	78,268,517 - 78,337,780 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant dyskeratosis congenita 6 (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion transmembrane transport (ISO)

cellular response to acidic pH (ISO)

detection of chemical stimulus involved in sensory perception of sour taste (ISO)

monoatomic cation transmembrane transport (ISO)

monoatomic cation transport (ISO)

sensory perception of sour taste (IEA)

Cellular Component

cation channel complex (ISO)

cell surface (ISO)

membrane (IEA)

plasma membrane (IEA)

receptor complex (ISO)

Molecular Function

calcium ion binding (IEA)

calcium-activated cation channel activity (ISO)

monoatomic cation channel activity (ISO)

monoatomic cation transmembrane transporter activity (ISO)

pH-gated monoatomic ion channel activity (ISO)

protein binding (ISO)

sour taste receptor activity (ISO)

transmembrane transporter binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PKD1L3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	77,690,991 - 77,756,355 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	77,692,200 - 77,754,474 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	77,648,165 - 77,718,071 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	78,126,411 - 78,195,695 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	78,131,520 - 78,193,816 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	77,946,493 - 78,015,756 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	77,769,182 - 77,838,638 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	78,268,517 - 78,337,780 (-)	NCBI		UU_Cfam_GSD_1.0

PKD1L3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	71,929,538 - 72,000,402 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	71,929,538 - 72,000,402 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	71,963,441 - 72,034,301 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	70,520,395 - 70,591,378 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	70,520,941 - 70,591,378	NCBI
Celera	16	56,277,357 - 56,347,989 (-)	NCBI		Celera
Cytogenetic Map	16	q22.2	NCBI
HuRef	16	57,730,623 - 57,800,692 (-)	NCBI		HuRef
CHM1_1	16	73,376,773 - 73,447,194 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	16	77,746,662 - 77,818,469 (-)	NCBI		T2T-CHM13v2.0

Pkd1l3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	110,340,828 - 110,399,305 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	110,341,149 - 110,401,018 (+)	Ensembl		GRCm39 Ensembl
GRCm38	8	109,614,190 - 109,672,673 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	109,614,517 - 109,674,386 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	112,138,417 - 112,196,492 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	112,503,646 - 112,559,850 (+)	NCBI		MGSCv36	mm8
Celera	8	113,840,135 - 113,898,231 (+)	NCBI		Celera
Cytogenetic Map	8	D3	NCBI
cM Map	8	57.14	NCBI

Pkd1l3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	19	54,494,529 - 54,559,596 (+)	NCBI		GRCr8
mRatBN7.2	19	37,585,564 - 37,650,083 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	19	37,585,725 - 37,650,155 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	19	41,990,249 - 42,054,390 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	41,989,650 - 42,054,018 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	52,814,619 - 52,879,420 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	19	39,489,363 - 39,555,398 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	19	36,990,385 - 37,053,340 (+)	NCBI		Celera
Cytogenetic Map	19	q12	NCBI

PKD1L3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	82,151,287 - 82,230,522 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	88,078,954 - 88,158,318 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	53,002,427 - 53,081,964 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	71,764,791 - 71,845,674 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	71,764,791 - 71,845,674 (-)	Ensembl	panpan1.1		panPan2

PKD1L3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	55,063,602 - 55,155,171 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	55,064,355 - 55,154,736 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	17,863,767 - 17,950,243 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pkd1l3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624746	14,191,382 - 14,243,579 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PKD1L3
666 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022419255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022419256	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022419257	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022419258	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022419259	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022419260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022419261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022419262	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022419263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022419264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038477242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038538446	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038602564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038667171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000032201 ⟹ ENSCAFP00000029987

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	5	77,692,200 - 77,754,474 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00000047274 ⟹ ENSCAFP00000040532

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	5	77,694,350 - 77,754,474 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845013500 ⟹ ENSCAFP00845010475

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	78,131,520 - 78,193,816 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845013560 ⟹ ENSCAFP00845010528

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	78,131,520 - 78,193,816 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845013790 ⟹ ENSCAFP00845010701

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	5	78,133,670 - 78,193,816 (-)	Ensembl

RefSeq Acc Id:

XM_022419259 ⟹ XP_022274967

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	5	77,690,991 - 77,756,355 (-)	NCBI
Dog10K_Boxer_Tasha	5	77,648,165 - 77,718,071 (-)	NCBI

Sequence:

show sequence

TTCCGGTCCGGGCTGCCCGCGCGGGCGCTTCGCGGTGCGGCGCTGCGGGGCTGGTGCCTTCTCG
TCCGCGACCCTTCACCTCCGAGCAGCCCTCCCATTAATACCTTGATCATTAGATGTGCCGGTGC
TCTCGGTAAAGCAGGTACCGGGAGTATGTGTCAGACACTGTAAAAGGGTTGGAATAAGATAACC
CGAATCGAGCCCAGAGAAGATTTCATCAGCATCAGGTTTTACCTAAAAAAGTGCCTAAAACGGA
CGTATGTAGAAAGAAAACCGTCTAAAGCAAACGATGGGCGTGCTGCTGGTGAAGAACAAATGAC
ATACTACGTGAACAAAGGGTTTTCAGCAATTCAAGTAAAGCAAAGTGCTTAACAGGTTTCACTG
CAGCTATGAGGAAGCAGAAGATTATTGTCGTATGCAGGGAGGACACCTCGCTTACACTTGGAAC
CCAGAGGTCCAGCATCTTCTCTGGGACTTTCTGGAAGAAGGGCATAAGTGGTGGATTGGACAAA
ATCTAAAGCTGCTGGGAAAACATCAAGAAAATAACAACCTAGCAGGTGTCATGCCCCCCTGGGC
CCCAGGCCCCATCAGCTGCATATACGTGTCCAGAAACTCCAACTGGATATCATCAAATGTGGAC
TTCTGCTCACTGGGACATTCTTTCATTTGCCAGGCTGATGCCTTTTCAGACCAACATGAAAGAC
ATGGAAATAATCCTCATTTACATTGGAGACCCGAGGAGACAAGAGGAGAAATGGCAGTACCAAG
AAACAAAAAGACCCCAGCTATTCATCCTGCACCCCCATGTCACCACCCTGCTCATGCTGATCTT
TCCAAGACCCTATGCCATTCCATCAGCCCGTTTCCTTCAGCACTGCCCAGAGTCACATGGCAGG
TCCTGTCAGTCACCTGGGTGCCTACCAGCCACCCTCTCTCTGTCACACCAGCGCTCCCCAGGCC
TGCACCCAAAGAACAGTCTGGGCAAGCTTTGGTAGAAGTGACCTCAAGCCCCAAAGAGAACACC
CACACAGAGGTTGTCACCACTCACCTACAAACATCATTTCAGGATGCCTCTGATCAGGTCGTAT
ATGAGACAGCAAGGAACTTGAACAAAGCAATTCATGGTTTGCAAACTAACAGCAAACTACAGAC
AGCTTGTGAGATGCTCCAGAAACTGACAGCCTTAATCCCAGAATTTTCTAAGTCAGCTCAGGTC
AGTGTCATCAGTCCTCTTGTGGACCTGAATGAGCAGCTACCTGACAGTGTATCTCAGAGCAATG
GCATTCGGGGCTTTGAAAACCCTGTGACTGTCTGCCTCATTCACTCCCTTGACGATGTAGTAGA
AGCTGGTAAGGCCAGTCTGCAAAGATCCAAACATGACATTAAGCAGCAGGTAGAAAATACGCTG
GAAATGGCCTTGCTGGCTCTTGGGAAGATCCAAGAAGTGTTCCTACAACAGAACCGGTTTTCTG
AGTCTTTAGTGACTTTGACCTCTTCTGTTGCTACCCTGGTGCTGAGCAGCCAAAACATGTCAAC
CTGGCCTCTGAGCTCCTACACTCTTGGGTCTCCAGCACTTGTGAGGTTAGGCTTTCTATCAGCT
TCAGCACTGGAAGAGGTGTTGAACAGACACCCGGGAGTTAATGTACAAGTAACAGGACTAGCTT
TCAATCCCTTCAAGGATTTTGATGACAAGAACATTGTTGGAAACATCGGAAGTGTGTTGCTAAG
CTCTAATCAGAAATTGTTTCAAGTCCATGATTTAATGGGAGATATTGAGATCATGCTATGGAGA
AATGTTAGCATGGAAACCCATCCCACCAGCCTCAACGTGACCTCAGATCATTTTATTATCATAA
TGAACATCACTTCCCTGGAGAAATCCCTGATCGTGTGCGTAGAACCTGAAAGTCCCCTTTTAAT
GACACTCTACCTGGGGTTCCAGTATCAGCCTAACCACACCCGCTTTGACCTGAACATCACCCTT
CCAAAGGATCAGGTGTGGCAAAAAGATGAGGAATACACATGGGTATTGACTCCAGAGAGTCTGC
AGTATAGGATTGGCACCTACCACATAACAGCCACGTTGAATAAAAGCAAGGAGAGTGCCCAGCA
GACTCCCACCCTGTTCTCAGTGGTAACTGCCGTCACTCAGTGTTATTTCTGGGACAGCCACAAT
AGCACATGGAAGAGCACTGGATGCCACGTCGGGCCACGGAGCACGGTTTTGAGGACACAATGTC
TCTGTAACCGCCTGGCCTACTTTGGCAGTGACTTCTTCATTGCGCCCCGGACAGTGAACGTTGA
GGACACGATCAAGCTGTTCCTTCGCGTGACCACCAACCCTGTCGGGGTGTCTTTGCTCATAAGC
CTCTTAGGCTTCTATATGCTCACATGTGTGTGGGCTTGGAGAAAGGATCAAGCAGACATGCAGA
AGGTGAAGGTCACCGTCCTGGCTGATAATGACCCCAGCTCTCAGTTTCACTACCTTCTTCAGGT
CTCCACTGGTTATCGAAGAAAGGCTGCCACAACAGCGAAGGTGGTTATCACCCTTTATGGATCA
GAGAGACGGAGTGAGCCCCATCACCTCTGTGACTCCCAGAAGGCAGTCTTTGAGCGAGGGGGAC
TGGACGTCTTCCTCCTCAGCACTAAGTCCTCCCTAGGGGAGTTGCACAGCATGCGCCTCTGGCA
TGACAATTCGGGTACCAGTCCTTCTTGGTACGTAAACCAGGTAATTGTCAGTGACATGGCCAGT
AAAAGGAAATGGTGCTTCCTGTGCAACTGTTGGCTGGCCGTTGACCTCGGAGAGTGCCAGCGTG
ACCGGGTCTTCATGCCAGTCTCAAAGAAAGAACTCTTTTCCTTTAGACACCTGTTCTCCTCCAT
CATTGTAGAAAAGCTCACCCAGGATTATCTGTGGCTCTCGGTTTTAACTCGACATCCCTGGAAC
CGGTTCACAAGAGTCCAGAGGCTCACCTGTTACATGACCTTGCTTCTGTGCAACATGGTCATCA
ATGTTATGTTCTGGAGGACAAGCAGCACCACTGCCAAGAGAGACGAGCAAGTGGGTCCATTTGC
TGTGACCTGGTCCCAGGTGATCATCAGCGTCCAAACTGCTGTCCTTCTCTTCCCTGTCAATCTT
GTAATTGGGCGCCTCTTCCCACTGATCCAGCCACAGGAACCCCGGCCTCTCTTTCCTCCCAGCC
AAGCCTCCTGCCTCTCGGATGCTACTTTTGAGCCTCTGTCTCTCACAGAGGTGGCTGAGGAATT
AAAGGAAACTGTGGGATTCCTGCTCAGGAGAAATACATACCTACTCTCAGAGTGTGAACAATCC
TTATGGACTTCTTATAGCATTAACAAGCTGGTTCAGCTTTTATCCAGCCTCATCTATTCTCACT
TAGAGCGTCACGGCTCTCACCAGCAGGCAGGACCCCATCGGGCAAATGTGGTTCCTGATAGCCA
CCACCATCTCTGCTGTTACCTGCTGGGAGTTGTGCAGCGGCTCCATTCTCACTTAAGTGCCGTG
GGTCCCACTCAGGTCGACCAGCCTTGTGACGTCCTGGATGCCACCAACCAACTGCAAAAACTCC
AGAAGCTCTTGGAAACACGTGTTCTTCACCTCGAGCAGGGGCCCTCCAGGGAGGTCACCAGTTT
CCCCCTCCTGAGCCCAGAAGAAGGGAAGGAGCCCATCGCTTACAGCCTGCCCAGAGGAGTGACT
TATATCTGCTGGCTCTGTCTGGGTGTCACTAGCCTGGTTGCAGCCTTTTTTACTGCACTTTACA
GCCTGGAACTGACCAAAGACCAAGCCACCAGCTGGGTGATGTCAGTGATACTATCAGTGCTTCA
AAACATTGTCATCAGCCAGCCAATAAAGGCGATCTTCCTTGCTTTGTTCGATTCCCTGATGCTG
AGCAGGATGCCGTGGCTTACCAAAGAGAAGGAACAACAGACGAGGAGGATCTTGGCACTCGTGG
CAAAATGCTCACCATTACCTGGCTCAAGAGATAAGAATAACCCCATCTATGTAGCTCCAGCTGC
CAACAGTCCAGTTAAGCGCCCAGAAAGAACCATGAAAGAGAAGAAACTCTTCAAGCTGACAGGA
GATATTTTGGTACAAGTCCTCTTCCTTATCTTGTTGATGACCACAGTCTACTCAGCACAGAACT
CCAATAGGTTTTACCTCCATCAAGCTCTCCGGAAGAGCTTTTCCCGCCATTTCTCAGAGATCAG
ACTTCTGAAGCATTTTTACTTGTGGGCCAATCACACCCTCCTTCCTAGCCTTTATGGGGATTAC
AGAGGGTTTATTGCCGATGGGAACTCCTTTCTTTTGGGCAATGTTCTGCTTCGTCAGATTCGCA
TTCCCAGTGCCGTACTACTTCCAACTGGAATGTCTCCCCACGAACAAGTGAAGCTATCTCCCCA
AGATCAAGAGGATACAGAGAACTATGGAGTAAACTGGGGTCCCCCTGATACAAACATCACAAAA
TCAGACAGCATTTGGCATTATCAGAATCAAGAGATACTGGGTGGCTATCCTATCCAAGGGGAAC
ATGCCACTTACTCAGGAGGAGGGTATGTTGTGAAACTTGGAAGAAGCTCCAGTACTGCAATCAG
TGTTCTGCAGCATCTTGAACAGAGCCACTGGCTTGACCATTGCACCAAAAGCCTCTTTGTGGAA
TTTGTGGTCTTCAATGCTAATGTGAACCTGTTCTGCGTAGTGACCCTGATTTTGGAGTCCAACA
ACATGGGTACGTTCTTCACCTCGCTGAGGTTGGACACTTTAACTTCCTTTCAGGCAAAGAAGGA
CTTTGCCTGGTCTGTCATCTCACAAGTCGTCTACTACCTACTAGTCTGTTACTGTGCCTTTATA
CAGGGTCATCGGCTGAAACAGCAGAGGTGGAGGTTCTTCACTAGGAAAAGAAACATTCTGGACA
TGAGCATAATCCTTATTAGCTTTGTCCTCCTGGGTCTGGAGGTGAAGCTTACTTCTCTGTGTAA
GAAAAACATGGCACAGTACCACTATGACCGTGACAGGTTCATCAGCTTCCGTGAGGCAATAAAA
GTAAACTCAGCAGCCATTCACCTTATGGGCTTCCTGGTTCTGTTGGCAACTGTTCGGCTGTGGA
ACCTGATGCACCATATCCCCAGGCTGCAGGTCATCGGTACAACACTCAGCAAAGCCTGGGACGA
GGTGGTGGGCTTCTTGCTGGTCATCCTCATCCTGCTGACGGGCTATGCCATTGCTTTTAACCTG
CTGTTCGGATGGAGCATTTCTGACTACAGAACTTTCTTCAGCTCCGCAGTGACTGTTGTTGGTC
TCCTAATGGGAATCTCTCATCACGAGGAGGTTATCGCTTTAGACCCAATCCTGGGCTCCTTTCT
GATAATCACCAGTGTCTTCTTGATGGTACTTGTGATCATTAACCTTTTTGTTTCAGTCATTCTC
ATGGCCTTTGGTAAAGAAAGAAAGTCCCTTAAGACTCTGAAAGAAGGTACACTGATAGATATGG
TGCTACAGAAGCTCTCCAGTTTGCTGGGAATCCAGCAGCACCAGAACACGTACAGTGGAAGTTG
AAGCAGCAGGTACATAAAGAACTTGAGATTGAAAGAATGATGATACCATTAACAGAAACAAGGA
GATTCTGGGAGATTCTCTGCAGCCAGAGAGATACTTTCTTTTTGGGCAAGGGAAATGCTGAGTT
CTACTTTCATTATACATCATCTACATTCTGGGAGAGAAGAGGGCATGTGGGTAATATGCCACAA
ACATGAACACTATTTCTGAGGCAGGAACAGCAATGAGAAAACCGCAAAGGATTCAGCAATGAGG
GTTTCTGACTCATACTCACCAACA

hide sequence

RefSeq Acc Id:

XM_038477242 ⟹ XP_038333170

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	5	77,946,493 - 78,015,756 (-)	NCBI

RefSeq Acc Id:

XM_038538446 ⟹ XP_038394374

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	5	78,268,517 - 78,337,780 (-)	NCBI

RefSeq Acc Id:

XM_038602564 ⟹ XP_038458492

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	5	77,769,182 - 77,838,638 (-)	NCBI

RefSeq Acc Id:

XM_038667171 ⟹ XP_038523099

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	5	78,126,411 - 78,195,695 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_022274967	(Get FASTA)	NCBI Sequence Viewer
	XP_038333170	(Get FASTA)	NCBI Sequence Viewer
	XP_038394374	(Get FASTA)	NCBI Sequence Viewer
	XP_038458492	(Get FASTA)	NCBI Sequence Viewer
	XP_038523099	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000029987.4
	ENSCAFP00000040532.2
	ENSCAFP00000071047.1
	ENSCAFP00040030635.1
	ENSCAFP00040030857.1
	ENSCAFP00845010475.1
	ENSCAFP00845010528.1
	ENSCAFP00845010701
	ENSCAFP00845010701.1

RefSeq Acc Id:

XP_022274967 ⟸ XM_022419259

- UniProtKB:

A0A8C0LBF5 (UniProtKB/TrEMBL), A0A8C0T2X8 (UniProtKB/TrEMBL), A0A8I3RVM5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MQGGHLAYTWNPEVQHLLWDFLEEGHKWWIGQNLKLLGKHQENNNLAGVMPPWAPGPISCIYVS
RNSNWISSNVDFCSLGHSFICQADAFSDQHERHGNNPHLHWRPEETRGEMAVPRNKKTPAIHPA
PPCHHPAHADLSKTLCHSISPFPSALPRVTWQVLSVTWVPTSHPLSVTPALPRPAPKEQSGQAL
VEVTSSPKENTHTEVVTTHLQTSFQDASDQVVYETARNLNKAIHGLQTNSKLQTACEMLQKLTA
LIPEFSKSAQVSVISPLVDLNEQLPDSVSQSNGIRGFENPVTVCLIHSLDDVVEAGKASLQRSK
HDIKQQVENTLEMALLALGKIQEVFLQQNRFSESLVTLTSSVATLVLSSQNMSTWPLSSYTLGS
PALVRLGFLSASALEEVLNRHPGVNVQVTGLAFNPFKDFDDKNIVGNIGSVLLSSNQKLFQVHD
LMGDIEIMLWRNVSMETHPTSLNVTSDHFIIIMNITSLEKSLIVCVEPESPLLMTLYLGFQYQP
NHTRFDLNITLPKDQVWQKDEEYTWVLTPESLQYRIGTYHITATLNKSKESAQQTPTLFSVVTA
VTQCYFWDSHNSTWKSTGCHVGPRSTVLRTQCLCNRLAYFGSDFFIAPRTVNVEDTIKLFLRVT
TNPVGVSLLISLLGFYMLTCVWAWRKDQADMQKVKVTVLADNDPSSQFHYLLQVSTGYRRKAAT
TAKVVITLYGSERRSEPHHLCDSQKAVFERGGLDVFLLSTKSSLGELHSMRLWHDNSGTSPSWY
VNQVIVSDMASKRKWCFLCNCWLAVDLGECQRDRVFMPVSKKELFSFRHLFSSIIVEKLTQDYL
WLSVLTRHPWNRFTRVQRLTCYMTLLLCNMVINVMFWRTSSTTAKRDEQVGPFAVTWSQVIISV
QTAVLLFPVNLVIGRLFPLIQPQEPRPLFPPSQASCLSDATFEPLSLTEVAEELKETVGFLLRR
NTYLLSECEQSLWTSYSINKLVQLLSSLIYSHLERHGSHQQAGPHRANVVPDSHHHLCCYLLGV
VQRLHSHLSAVGPTQVDQPCDVLDATNQLQKLQKLLETRVLHLEQGPSREVTSFPLLSPEEGKE
PIAYSLPRGVTYICWLCLGVTSLVAAFFTALYSLELTKDQATSWVMSVILSVLQNIVISQPIKA
IFLALFDSLMLSRMPWLTKEKEQQTRRILALVAKCSPLPGSRDKNNPIYVAPAANSPVKRPERT
MKEKKLFKLTGDILVQVLFLILLMTTVYSAQNSNRFYLHQALRKSFSRHFSEIRLLKHFYLWAN
HTLLPSLYGDYRGFIADGNSFLLGNVLLRQIRIPSAVLLPTGMSPHEQVKLSPQDQEDTENYGV
NWGPPDTNITKSDSIWHYQNQEILGGYPIQGEHATYSGGGYVVKLGRSSSTAISVLQHLEQSHW
LDHCTKSLFVEFVVFNANVNLFCVVTLILESNNMGTFFTSLRLDTLTSFQAKKDFAWSVISQVV
YYLLVCYCAFIQGHRLKQQRWRFFTRKRNILDMSIILISFVLLGLEVKLTSLCKKNMAQYHYDR
DRFISFREAIKVNSAAIHLMGFLVLLATVRLWNLMHHIPRLQVIGTTLSKAWDEVVGFLLVILI
LLTGYAIAFNLLFGWSISDYRTFFSSAVTVVGLLMGISHHEEVIALDPILGSFLIITSVFLMVL
VIINLFVSVILMAFGKERKSLKTLKEGTLIDMVLQKLSSLLGIQQHQNTYSGS

hide sequence

Ensembl Acc Id:

ENSCAFP00000040532 ⟸ ENSCAFT00000047274

Ensembl Acc Id:

ENSCAFP00000029987 ⟸ ENSCAFT00000032201

RefSeq Acc Id:

XP_038333170 ⟸ XM_038477242

RefSeq Acc Id:

XP_038458492 ⟸ XM_038602564

RefSeq Acc Id:	XP_038523099 ⟸ XM_038667171
- UniProtKB:	A0A8C0LBF5 (UniProtKB/TrEMBL), A0A8C0T2X8 (UniProtKB/TrEMBL), A0A8I3RVM5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038394374 ⟸ XM_038538446
- UniProtKB:	A0A8C0LBF5 (UniProtKB/TrEMBL), A0A8C0T2X8 (UniProtKB/TrEMBL), A0A8I3RVM5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845010701 ⟸ ENSCAFT00845013790

Ensembl Acc Id:

ENSCAFP00845010528 ⟸ ENSCAFT00845013560

Ensembl Acc Id:

ENSCAFP00845010475 ⟸ ENSCAFT00845013500

Protein Domains

C-type lectin PLAT

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000020217	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00040018568	UniProtKB/TrEMBL
	ENSCAFG00845007063	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000032201.6	UniProtKB/TrEMBL
	ENSCAFT00000047274.3	UniProtKB/TrEMBL
	ENSCAFT00000103068.1	UniProtKB/TrEMBL
	ENSCAFT00040035188.1	UniProtKB/TrEMBL
	ENSCAFT00040035439.1	UniProtKB/TrEMBL
	ENSCAFT00845013500.1	UniProtKB/TrEMBL
	ENSCAFT00845013560.1	UniProtKB/TrEMBL
	ENSCAFT00845013790	ENTREZGENE
	ENSCAFT00845013790.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.70	UniProtKB/TrEMBL
	3.10.100.10	UniProtKB/TrEMBL
	PLAT/LH2 domain	UniProtKB/TrEMBL
InterPro	C-type_lectin-like	UniProtKB/TrEMBL
	C-type_lectin-like/link_sf	UniProtKB/TrEMBL
	CTDL_fold	UniProtKB/TrEMBL
	GPS	UniProtKB/TrEMBL
	PKD1_2_channel	UniProtKB/TrEMBL
	PKD_2	UniProtKB/TrEMBL
	PLAT/LH2_dom	UniProtKB/TrEMBL
	PLAT/LH2_dom_sf	UniProtKB/TrEMBL
	PLAT_polycystin1	UniProtKB/TrEMBL
	Polycystin	UniProtKB/TrEMBL
	Polycystin_dom	UniProtKB/TrEMBL
NCBI Gene	PKD1L3	ENTREZGENE
PANTHER	POLYCYSTIC KIDNEY DISEASE PROTEIN 1-LIKE 3	UniProtKB/TrEMBL
	POLYCYSTIN FAMILY MEMBER	UniProtKB/TrEMBL
Pfam	GPS	UniProtKB/TrEMBL
	Lectin_C	UniProtKB/TrEMBL
	PKD_channel	UniProtKB/TrEMBL
	PLAT	UniProtKB/TrEMBL
	Polycystin_dom	UniProtKB/TrEMBL
PRINTS	POLYCYSTIN2	UniProtKB/TrEMBL
PROSITE	C_TYPE_LECTIN_2	UniProtKB/TrEMBL
	GPS	UniProtKB/TrEMBL
	PLAT	UniProtKB/TrEMBL
SMART	CLECT	UniProtKB/TrEMBL
	GPS	UniProtKB/TrEMBL
	LH2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49723	UniProtKB/TrEMBL
	SSF56436	UniProtKB/TrEMBL
	Voltage-gated potassium channels	UniProtKB/TrEMBL
UniProt	A0A8C0LBF5	ENTREZGENE
	A0A8C0T2X8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0T7J0_CANLF	UniProtKB/TrEMBL
	A0A8I3MVZ8_CANLF	UniProtKB/TrEMBL
	A0A8I3MXC9_CANLF	UniProtKB/TrEMBL
	A0A8I3RVM5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0TNH6_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:44599	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar