LOC102154080 (U6 snRNA-associated Sm-like protein LSm3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: LOC102154080 (U6 snRNA-associated Sm-like protein LSm3) Canis lupus familiaris
Analyze
Symbol: LOC102154080 (Ensembl: LSM3)
Name: U6 snRNA-associated Sm-like protein LSm3
RGD ID: 12375538
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN mRNA processing (inferred); mRNA splicing, via spliceosome (inferred); RNA splicing (inferred); FOUND IN nucleus (inferred); Sm-like protein family complex (inferred); spliceosomal complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: U6 snRNA-associated Sm-like protein LSm3 pseudogene
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11514,519,325 - 14,519,728 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1514,640,828 - 14,641,214 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01514,673,001 - 14,673,387 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1514,673,010 - 14,673,306 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11514,472,088 - 14,472,474 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01514,540,772 - 14,541,158 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01514,610,473 - 14,610,859 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
RNA binding  (IBA,IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC102154080
19 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00845037423   ⟹   ENSCAFP00845029315
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1514,673,010 - 14,673,306 (+)Ensembl
RefSeq Acc Id: XM_038451648   ⟹   XP_038307576
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1514,640,828 - 14,641,214 (+)NCBI
RefSeq Acc Id: XM_038495816   ⟹   XP_038351744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11514,472,088 - 14,472,474 (+)NCBI
RefSeq Acc Id: XM_038558200   ⟹   XP_038414128
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01514,610,473 - 14,610,859 (+)NCBI
RefSeq Acc Id: XM_038622075   ⟹   XP_038478003
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01514,540,772 - 14,541,158 (+)NCBI
RefSeq Acc Id: XM_038687818   ⟹   XP_038543746
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01514,673,001 - 14,673,387 (+)NCBI
RefSeq Acc Id: XP_038351744   ⟸   XM_038495816
RefSeq Acc Id: XP_038478003   ⟸   XM_038622075
RefSeq Acc Id: XP_038543746   ⟸   XM_038687818
- UniProtKB: A0A8C0NTX7 (UniProtKB/TrEMBL),   A0A8I3PBH2 (UniProtKB/TrEMBL),   A0A8C0T7J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038307576   ⟸   XM_038451648
- UniProtKB: A0A8C0R2A5 (UniProtKB/TrEMBL),   A0A8P0T054 (UniProtKB/TrEMBL),   A0A8C0T7J3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414128   ⟸   XM_038558200
- UniProtKB: A0A8C0NTX7 (UniProtKB/TrEMBL),   A0A8C0T7J3 (UniProtKB/TrEMBL),   A0A8I3PBH2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845029315   ⟸   ENSCAFT00845037423
Protein Domains
Sm


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000048061 UniProtKB/TrEMBL
  ENSCAFG00030018320 UniProtKB/TrEMBL
  ENSCAFG00040017150 UniProtKB/TrEMBL
  ENSCAFG00040020417 UniProtKB/TrEMBL
  ENSCAFG00845021214 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000085014.2 UniProtKB/TrEMBL
  ENSCAFT00030033724.1 UniProtKB/TrEMBL
  ENSCAFT00040031667.1 UniProtKB/TrEMBL
  ENSCAFT00040037777.1 UniProtKB/TrEMBL
  ENSCAFT00845037423 ENTREZGENE
  ENSCAFT00845037423.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  Lsm3 UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  Sm-like_LSM3 UniProtKB/TrEMBL
NCBI Gene LOC102154080 ENTREZGENE
PANTHER PTHR13110 UniProtKB/TrEMBL
  PTHR13110:SF7 UniProtKB/TrEMBL
  U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PROSITE PS52002 UniProtKB/TrEMBL
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt A0A8C0NTX7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R2A5 ENTREZGENE
  A0A8C0T7J3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PBH2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T054 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC102154080  U6 snRNA-associated Sm-like protein LSm3  LOC102154080  U6 snRNA-associated Sm-like protein LSm3 pseudogene  Symbol and/or name change 5135510 APPROVED