LOC102155750 (28S ribosomal protein S16, mitochondrial-like) - Rat Genome Database

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Gene: LOC102155750 (28S ribosomal protein S16, mitochondrial-like) Canis lupus familiaris
Analyze
Symbol: LOC102155750
Name: 28S ribosomal protein S16, mitochondrial-like
RGD ID: 12359337
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN cytoplasm (inferred); ribonucleoprotein complex (inferred); ribosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 28S ribosomal protein S16, mitochondrial pseudogene
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12310,594,641 - 10,595,102 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2310,631,143 - 10,631,609 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02310,881,966 - 10,882,445 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12310,691,750 - 10,692,226 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02310,833,232 - 10,833,724 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02310,825,297 - 10,825,762 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC102155750
5 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
5 4 4 14 15 13 5 4 5 4 23 14 7 9 8

Sequence


RefSeq Acc Id: XM_038431990   ⟹   XP_038287918
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02310,881,966 - 10,882,445 (+)NCBI
RefSeq Acc Id: XM_038456981   ⟹   XP_038312909
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2310,631,143 - 10,631,609 (+)NCBI
RefSeq Acc Id: XM_038507299   ⟹   XP_038363227
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12310,691,750 - 10,692,226 (+)NCBI
RefSeq Acc Id: XM_038570536   ⟹   XP_038426464
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02310,825,297 - 10,825,762 (+)NCBI
RefSeq Acc Id: XM_038634715   ⟹   XP_038490643
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02310,833,232 - 10,833,724 (+)NCBI
RefSeq Acc Id: XP_038363227   ⟸   XM_038507299
RefSeq Acc Id: XP_038490643   ⟸   XM_038634715
RefSeq Acc Id: XP_038287918   ⟸   XM_038431990
- UniProtKB: A0A8C0N8L2 (UniProtKB/TrEMBL),   A0A8I3S0L7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038312909   ⟸   XM_038456981
- UniProtKB: A0A8C0N8L2 (UniProtKB/TrEMBL),   A0A8I3S0L7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038426464   ⟸   XM_038570536
- UniProtKB: A0A8C0N8L2 (UniProtKB/TrEMBL),   A0A8I3S0L7 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000014657 UniProtKB/TrEMBL
  ENSCAFG00030014248 UniProtKB/TrEMBL
  ENSCAFG00040021003 UniProtKB/TrEMBL
  ENSCAFG00845018652 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000023267.4 UniProtKB/TrEMBL
  ENSCAFT00030026363.1 UniProtKB/TrEMBL
  ENSCAFT00040038913.1 UniProtKB/TrEMBL
  ENSCAFT00845032976.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1320.10 UniProtKB/TrEMBL
InterPro Ribosomal_S16 UniProtKB/TrEMBL
  Ribosomal_S16_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC102155750 ENTREZGENE
PANTHER 30S RIBOSOMAL PROTEIN S16 UniProtKB/TrEMBL
  SMALL RIBOSOMAL SUBUNIT PROTEIN BS16M UniProtKB/TrEMBL
Pfam Ribosomal_S16 UniProtKB/TrEMBL
Superfamily-SCOP Ribosomal protein S16 UniProtKB/TrEMBL
UniProt A0A8C0N8L2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Z3D1_CANLF UniProtKB/TrEMBL
  A0A8I3S0L7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0NUD6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC102155750  28S ribosomal protein S16, mitochondrial-like  LOC102155750  28S ribosomal protein S16, mitochondrial pseudogene  Symbol and/or name change 5135510 APPROVED