AGTRAP (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 2 | 84,489,269 - 84,501,732 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 2 | 84,490,638 - 84,501,919 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 2 | 81,022,353 - 81,035,230 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 2 | 85,153,576 - 85,166,464 (-) | NCBI | | ROS_Cfam_1.0 | | | UMICH_Zoey_3.1 | 2 | 81,902,058 - 81,914,849 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 2 | 82,902,298 - 82,915,167 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 2 | 83,965,066 - 83,977,997 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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AGTRAP (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
GRCh38 | 1 | 11,736,136 - 11,750,769 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 11,736,084 - 11,754,802 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 1 | 11,796,193 - 11,810,826 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 11,718,729 - 11,733,415 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Build 34 | 1 | 11,730,477 - 11,745,088 | NCBI | | | | | Celera | 1 | 10,908,147 - 10,923,614 (+) | NCBI | | Celera | | | Cytogenetic Map | 1 | p36.22 | NCBI | | | | | HuRef | 1 | 10,950,284 - 10,965,509 (+) | NCBI | | HuRef | | | CHM1_1 | 1 | 11,784,155 - 11,798,835 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 11,280,231 - 11,294,863 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Agtrap (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 4 | 148,161,518 - 148,172,521 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 4 | 148,161,518 - 148,172,488 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 4 | 148,077,061 - 148,088,064 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 4 | 148,077,061 - 148,088,031 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 4 | 147,451,170 - 147,462,173 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 4 | 146,920,861 - 146,931,798 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 4 | 150,343,718 - 150,354,641 (-) | NCBI | | Celera | | | Cytogenetic Map | 4 | E1 | NCBI | | | | | cM Map | 4 | 78.67 | NCBI | | | | |
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Agtrap (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
GRCr8 | 5 | 163,790,565 - 163,802,174 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 5 | 158,507,427 - 158,519,036 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 5 | 158,508,749 - 158,519,036 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 5 | 161,225,469 - 161,235,787 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 5 | 163,045,736 - 163,058,170 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 5 | 163,002,093 - 163,014,527 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 5 | 164,888,069 - 164,898,387 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 5 | 164,886,813 - 164,898,420 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 5 | 168,546,202 - 168,556,520 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 5 | 165,154,252 - 165,164,570 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | RGSC_v3.1 | 5 | 165,164,457 - 165,174,758 (-) | NCBI | | | | | Celera | 5 | 156,788,514 - 156,798,832 (-) | NCBI | | Celera | | | Cytogenetic Map | 5 | q36 | NCBI | | | | |
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Agtrap (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChiLan1.0 Ensembl | NW_004955486 | 2,137,065 - 2,149,882 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955486 | 2,137,249 - 2,149,978 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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AGTRAP (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
NHGRI_mPanPan1-v2 | 1 | 216,473,368 - 216,488,053 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 215,119,061 - 215,133,734 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 10,498,245 - 10,512,906 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 11,715,672 - 11,730,326 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 11,715,672 - 11,730,326 (+) | Ensembl | panpan1.1 | | panPan2 | |
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Agtrap (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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AGTRAP (Sus scrofa - pig) |
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AGTRAP (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
---|
ChlSab1.1 | 20 | 120,041,804 - 120,056,597 (-) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 20 | 120,041,479 - 120,056,557 (-) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666054 | 23,909,520 - 23,924,282 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Agtrap (Heterocephalus glaber - naked mole-rat) |
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