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Gene: LRFN4 (leucine rich repeat and fibronectin type III domain containing 4) Canis lupus familiaris

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Symbol:

LRFN4

Name:

leucine rich repeat and fibronectin type III domain containing 4

RGD ID:

12313840

Description:

INVOLVED IN regulation of postsynaptic density assembly (inferred); regulation of presynapse assembly (inferred); synaptic membrane adhesion (inferred); ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); intellectual disability (ortholog); pyruvate carboxylase deficiency disease (ortholog); FOUND IN GABA-ergic synapse (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

leucine-rich repeat and fibronectin type-III domain-containing protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	50,495,971 - 50,499,062 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	50,495,971 - 50,499,068 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	49,105,908 - 49,109,194 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	51,446,247 - 51,449,534 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	51,446,247 - 51,448,995 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	50,630,687 - 50,633,971 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	50,210,034 - 50,213,320 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	50,999,800 - 51,003,086 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Aicardi-Goutieres Syndrome 3 (ISO)

intellectual disability (ISO)

pyruvate carboxylase deficiency disease (ISO)

Recurrent Infections, with Encephalopathy, Hepatic Dysfunction, and Cardiovascular Malformations (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of postsynaptic density assembly (IBA,IEA)

regulation of presynapse assembly (IBA,IEA)

synaptic membrane adhesion (IBA,IEA)

Cellular Component

cell surface (IBA,IEA)

GABA-ergic synapse (IEA,ISO)

glutamatergic synapse (IBA,IEA)

membrane (IEA)

postsynaptic density membrane (IBA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LRFN4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	50,495,971 - 50,499,062 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	50,495,971 - 50,499,068 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	49,105,908 - 49,109,194 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	51,446,247 - 51,449,534 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	51,446,247 - 51,448,995 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	50,630,687 - 50,633,971 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	50,210,034 - 50,213,320 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	50,999,800 - 51,003,086 (-)	NCBI		UU_Cfam_GSD_1.0

LRFN4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	66,857,064 - 66,860,475 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	66,856,647 - 66,860,475 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	66,624,535 - 66,627,946 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	66,381,549 - 66,384,522 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	66,381,548 - 66,384,521	NCBI
Celera	11	63,953,000 - 63,956,070 (+)	NCBI		Celera
Cytogenetic Map	11	q13.2	NCBI
HuRef	11	62,952,723 - 62,955,793 (+)	NCBI		HuRef
CHM1_1	11	66,508,475 - 66,511,545 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	66,853,340 - 66,856,751 (+)	NCBI		T2T-CHM13v2.0

Lrfn4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	4,661,817 - 4,665,720 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	4,661,813 - 4,665,695 (-)	Ensembl		GRCm39 Ensembl
GRCm38	19	4,611,784 - 4,615,667 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	4,611,785 - 4,615,667 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	4,611,784 - 4,615,667 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	4,611,792 - 4,615,502 (-)	NCBI		MGSCv36	mm8
Celera	19	4,482,803 - 4,486,850 (-)	NCBI		Celera
Cytogenetic Map	19	A	NCBI
cM Map	19	4.07	NCBI

Lrfn4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	211,317,980 - 211,321,272 (-)	NCBI		GRCr8
mRatBN7.2	1	201,888,569 - 201,891,861 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	201,888,569 - 201,891,861 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	210,241,488 - 210,244,780 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	217,333,987 - 217,337,279 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	210,025,007 - 210,028,299 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	219,850,037 - 219,855,771 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	219,850,037 - 219,853,329 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	226,716,517 - 226,720,363 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	207,202,925 - 207,206,217 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	199,429,461 - 199,432,753 (-)	NCBI		Celera
Cytogenetic Map	1	q43	NCBI

Lrfn4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	18,524,786 - 18,527,916 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955422	18,524,786 - 18,527,916 (-)	NCBI	ChiLan1.0	ChiLan1.0

LRFN4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	68,082,239 - 68,086,205 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	69,124,902 - 69,128,942 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	62,214,340 - 62,217,742 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	65,536,427 - 65,539,629 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	65,536,427 - 65,539,629 (+)	Ensembl	panpan1.1		panPan2

Lrfn4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	6,339,090 - 6,342,278 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936599	2,780,745 - 2,784,627 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936599	2,781,439 - 2,784,627 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRFN4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	5,576,622 - 5,580,009 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	5,576,625 - 5,579,397 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

LRFN4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	7,406,502 - 7,409,707 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	7,402,779 - 7,409,959 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	104,694,187 - 104,698,154 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrfn4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624767	19,589,631 - 19,593,705 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624767	19,589,631 - 19,593,302 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LRFN4
22 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038424845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038424846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038454515	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038501089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038501091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038563788	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038563789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038627906	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038627908	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_847121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000018821 ⟹ ENSCAFP00000017440

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	18	50,495,971 - 50,499,068 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00000073089 ⟹ ENSCAFP00000053936

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	18	50,495,971 - 50,499,068 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845021034 ⟹ ENSCAFP00845016535

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	18	51,446,247 - 51,448,995 (-)	Ensembl

RefSeq Acc Id:

XM_038424845 ⟹ XP_038280773

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	18	51,446,247 - 51,449,353 (-)	NCBI

RefSeq Acc Id:

XM_038424846 ⟹ XP_038280774

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	18	51,446,247 - 51,449,534 (-)	NCBI

RefSeq Acc Id:

XM_038454515 ⟹ XP_038310443

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	18	49,105,908 - 49,109,194 (-)	NCBI

RefSeq Acc Id:

XM_038501089 ⟹ XP_038357017

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	18	50,630,687 - 50,633,791 (-)	NCBI

RefSeq Acc Id:

XM_038501091 ⟹ XP_038357019

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	18	50,630,687 - 50,633,971 (-)	NCBI

RefSeq Acc Id:

XM_038563788 ⟹ XP_038419716

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	18	50,999,800 - 51,002,906 (-)	NCBI

RefSeq Acc Id:

XM_038563789 ⟹ XP_038419717

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	18	50,999,800 - 51,003,086 (-)	NCBI

RefSeq Acc Id:

XM_038627906 ⟹ XP_038483834

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	18	50,210,034 - 50,213,140 (-)	NCBI

RefSeq Acc Id:

XM_038627908 ⟹ XP_038483836

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	18	50,210,034 - 50,213,320 (-)	NCBI

RefSeq Acc Id:

XM_847121 ⟹ XP_852214

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	18	50,495,971 - 50,499,062 (-)	NCBI
Dog10K_Boxer_Tasha	18	49,105,908 - 49,109,014 (-)	NCBI

Sequence:

show sequence

TGGCGCGAAGGAAGGGGCCTGGCGGTTCCTGGAGACGCCAGAGAAAGGAAGTTCCGGGACCCTC
CCTGCTCTAGTGTCCACCTCCGCTTCCTGCCTCACGCTGCACCCCATCCCCAGAGCCAGGACCC
CCCTACCGGCTTGGGAAATGTGACCTTTACTCTGGGGGGGGGGCCTGGCCCTGCAGGCCCCGGC
CTTCTTTCAGCCCTGGGGGGCCCCTCGGGCCTCTGACCCTGACCCCCACGTGGGCCAGACTCTG
GAAGCTGGCCCTTGGGACTGGGCCACGGGCACAGCCAACACCTGTCCCAGCCCCACCTGTGCCT
GGGGCCCTGGCCCTTCCCTACAGGGCACTCACCATGGCCCCGCCACTCCTGCTGCTGCTGCTGG
CCAGTGGAGCGGCCGCCTGCCCCCTGCCCTGTGTCTGCCAGAACCTTTCCGAATCGCTCAGCAC
CCTCTGTGCCCACCGAGGCCTGCTGTTTGTGCCACCCAACGTGGACCGGCGCACAGTGGAGTTG
CGGCTGGCTGACAACTTCATCCAGGCCTTGGGGCCACCAGACTTTAGAAACATGACAGGGTTGG
TGGACCTGACGCTGTCCCGAAACGCCATCACCCGCATCGGGGCCCGCGCTTTTGGGGACCTGGA
AAGCCTGCGCTCCCTGCACCTGGATGGCAACAGGCTGGTGGAGCTGGGCGCCGGCAGCCTACGG
GGCCCTGTCAACCTGCAGCACCTCATCCTCAGTGGCAACCAGCTGGGCCGCATCTCACCTGGGG
CCTTCGATGACTTCCTGGACAGCCTAGAGGACCTGGACTTGTCCTACAACAACCTGCGGCAGGT
ACCCTGGGCCGGAATCGGTGCCATGCCTGCCCTGCACACCCTCAACCTGGACCACAACCTCATC
GATGCACTGCCCCCGGGTGCCTTTGCACAGCTCGGCCAGCTCTCCCGTCTTGACCTCACCTCCA
ACCGCCTGGCCACACTGGCACCCGACCCGCTCTTTTCCCGGGGGCGCGACGCAGAGGCCTCGCC
TGCCCCCCTGGTGCTGAGCTTCAGCGGGAACCCCCTGCACTGCAACTGCGAGCTGCTGTGGCTG
CGGCGGCTGGCCCGGCCTGACGACCTAGAGACGTGCGCCTCCCCTCCAGGCCTGGCTGGCCGCT
ACTTCTGGGCAGTGCCCGAGGGCGAGTTCTCCTGTGAGCCTCCCCTCATTGCCCGCCACACACA
GCGCCTCTGGGTGCTGGAGGGCCAGCGGGCCACGCTGCGGTGCCGGGCCCTTGGCGACCCTGCG
CCCACCATGCACTGGGTTGGCCCCGATGACCGGCTGGTTGGCAACTCCTCTCGAGCCCGGGCTT
TCCCCAACGGGACCCTGGAGATTGGGGTGACAGGCTCTGGGGACGCGGGGGGCTACACGTGCAT
TGCCACCAACCCTGCTGGTGAGGCCACAGCCCACGTAGAGCTACGAGTGCTGGCCCTGCCCCAT
GGTGGGAATGGCAGCACTGAGGGGGGCCGCCCTGGGCCCTCGGACATTGCTGCCTCAGCCCGCA
CTGCTGCTGAGGGCGAGGGGACACTCGAGTCTGAGCCGGCTGTGCAGGTGACGGAGGTGACTGC
CACCTCAGGGCTTGTGAGCTGGGGGCCGGGGCGGCCAGCAGACCCCGTGTGGATGTTCCAAATC
CAGTATAACAGCAGCGAGGACGAGACCCTCATCTACCGGATCGTCCCAGCCTCCAGCCACCACT
TCCTGCTGAAGCACCTAGTCCCTGGTGCCGACTATGACCTCTGCCTGCTGGCCCTGTCACCTGC
CGCTGGACCTTCCGACCTCACAGCCACGAGGCTGCTGGGCTGTGCCCACTTCTCCACACTACCG
GCTGCACCCCTGTGCCACGCCCTGCAGGCCCATGTGCTGGGCGGGACCCTGACCGTGGCCGTGG
GGGGTGTGCTGGTGGCTGCCTTACTGGTCTTCACTGTGGCCTTGCTGGTTCGGGGCCGGGGGGC
CGGGAATGGCCGCCTCCCCCTCAAGCTCAGCCACGTCCAATCCCAGACCAATGGAGGCCCCAGC
CCCACGCCCAAGGCCCACCCGCCACGGAGCCCACCACCTCGGCCCCAACGCAGCTGCTCCCTGG
ACCTGGGAGACGCCAGCGGGTGCTACGGTTATGCCAGGCGCCTTGGAGGGGCCTGGGCCCGGAG
GAGCCACTCCGTGCATGGGGGGCTGCTCGGGGCTGGGTGCCGAGGGGTGGGGGGCAGCATGGAG
CAGCTGGAGGAGAGTGTGGTGTGATGGGAAGGGAGTCAGCCCAGGGTGGGCTGGGGAAGGGGCA
GAGGACATGGGGTGGGCAGCTGCGGGGCCTGGTGGGTCAGCGCTGCCTGGGAGTCTCTCCTGAT
TTTACCCTTGGTACCTCAGGCTCCCTTTGTACTTGGCAGGACAGGGGGCCCTATCCCTGGTTCT
GGCCTCCAGACCCGTGTTCCTCCAACAGGTGCTCACAGCCACCAAGGCAGGGGCTGCAGCCACC
AAGCGGAAGTCTTGTTTTTCTTTATAATAAAATTGTTGGGTACACCTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038280773	(Get FASTA)	NCBI Sequence Viewer
	XP_038280774	(Get FASTA)	NCBI Sequence Viewer
	XP_038310443	(Get FASTA)	NCBI Sequence Viewer
	XP_038357017	(Get FASTA)	NCBI Sequence Viewer
	XP_038357019	(Get FASTA)	NCBI Sequence Viewer
	XP_038419716	(Get FASTA)	NCBI Sequence Viewer
	XP_038419717	(Get FASTA)	NCBI Sequence Viewer
	XP_038483834	(Get FASTA)	NCBI Sequence Viewer
	XP_038483836	(Get FASTA)	NCBI Sequence Viewer
	XP_852214	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000017440.4
	ENSCAFP00030030285.1
	ENSCAFP00040021284.1
	ENSCAFP00845016535
	ENSCAFP00845016535.1

RefSeq Acc Id:

XP_852214 ⟸ XM_847121

- UniProtKB:

A0A8C0SJ82 (UniProtKB/TrEMBL), A0A8I3NEU9 (UniProtKB/TrEMBL), A0A8C0R670 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAPPLLLLLLASGAAACPLPCVCQNLSESLSTLCAHRGLLFVPPNVDRRTVELRLADNFIQALG
PPDFRNMTGLVDLTLSRNAITRIGARAFGDLESLRSLHLDGNRLVELGAGSLRGPVNLQHLILS
GNQLGRISPGAFDDFLDSLEDLDLSYNNLRQVPWAGIGAMPALHTLNLDHNLIDALPPGAFAQL
GQLSRLDLTSNRLATLAPDPLFSRGRDAEASPAPLVLSFSGNPLHCNCELLWLRRLARPDDLET
CASPPGLAGRYFWAVPEGEFSCEPPLIARHTQRLWVLEGQRATLRCRALGDPAPTMHWVGPDDR
LVGNSSRARAFPNGTLEIGVTGSGDAGGYTCIATNPAGEATAHVELRVLALPHGGNGSTEGGRP
GPSDIAASARTAAEGEGTLESEPAVQVTEVTATSGLVSWGPGRPADPVWMFQIQYNSSEDETLI
YRIVPASSHHFLLKHLVPGADYDLCLLALSPAAGPSDLTATRLLGCAHFSTLPAAPLCHALQAH
VLGGTLTVAVGGVLVAALLVFTVALLVRGRGAGNGRLPLKLSHVQSQTNGGPSPTPKAHPPRSP
PPRPQRSCSLDLGDASGCYGYARRLGGAWARRSHSVHGGLLGAGCRGVGGSMEQLEESVV

hide sequence

Ensembl Acc Id:

ENSCAFP00000017440 ⟸ ENSCAFT00000018821

Ensembl Acc Id:

ENSCAFP00000053936 ⟸ ENSCAFT00000073089

RefSeq Acc Id:

XP_038357019 ⟸ XM_038501091

RefSeq Acc Id:

XP_038357017 ⟸ XM_038501089

RefSeq Acc Id:

XP_038483836 ⟸ XM_038627908

RefSeq Acc Id:

XP_038483834 ⟸ XM_038627906

RefSeq Acc Id:	XP_038280774 ⟸ XM_038424846
- UniProtKB:	A0A8C0SJ82 (UniProtKB/TrEMBL), A0A8I3NEU9 (UniProtKB/TrEMBL), A0A8C0R670 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038280773 ⟸ XM_038424845
- UniProtKB:	A0A8C0SJ82 (UniProtKB/TrEMBL), A0A8I3NEU9 (UniProtKB/TrEMBL), A0A8C0R670 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038310443 ⟸ XM_038454515
- UniProtKB:	A0A8C0SJ82 (UniProtKB/TrEMBL), A0A8I3NEU9 (UniProtKB/TrEMBL), A0A8C0R670 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038419717 ⟸ XM_038563789
- UniProtKB:	A0A8C0R670 (UniProtKB/TrEMBL), A0A8C0SJ82 (UniProtKB/TrEMBL), A0A8I3NEU9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038419716 ⟸ XM_038563788
- UniProtKB:	A0A8C0R670 (UniProtKB/TrEMBL), A0A8C0SJ82 (UniProtKB/TrEMBL), A0A8I3NEU9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845016535 ⟸ ENSCAFT00845021034

Protein Domains

Fibronectin type-III Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000011851	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030018888	UniProtKB/TrEMBL
	ENSCAFG00040013270	UniProtKB/TrEMBL
	ENSCAFG00845011852	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000018821.5	UniProtKB/TrEMBL
	ENSCAFT00030034728.1	UniProtKB/TrEMBL
	ENSCAFT00040024497.1	UniProtKB/TrEMBL
	ENSCAFT00845021034	ENTREZGENE
	ENSCAFT00845021034.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
	3.80.10.10	UniProtKB/TrEMBL
InterPro	Cys-rich_flank_reg_C	UniProtKB/TrEMBL
	FN3_dom	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_I-set	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	Leu-rich_rpt	UniProtKB/TrEMBL
	Leu-rich_rpt_typical-subtyp	UniProtKB/TrEMBL
	LRFN	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
NCBI Gene	LRFN4	ENTREZGENE
PANTHER	LEUCINE-RICH REPEAT AND FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN 4	UniProtKB/TrEMBL
	SYNAPTIC ADHESION-LIKE MOLECULE SALM	UniProtKB/TrEMBL
Pfam	fn3	UniProtKB/TrEMBL
	I-set	UniProtKB/TrEMBL
	LRR_1	UniProtKB/TrEMBL
	LRR_8	UniProtKB/TrEMBL
PROSITE	FN3	UniProtKB/TrEMBL
	IG_LIKE	UniProtKB/TrEMBL
	LRR	UniProtKB/TrEMBL
SMART	FN3	UniProtKB/TrEMBL
	IGc2	UniProtKB/TrEMBL
	LRR_TYP	UniProtKB/TrEMBL
	LRRCT	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	L domain-like	UniProtKB/TrEMBL
	SSF48726	UniProtKB/TrEMBL
	SSF49265	UniProtKB/TrEMBL
UniProt	A0A8C0R670	ENTREZGENE
	A0A8C0SJ82	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NEU9	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:42763	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar