S100A2 (S100 calcium binding protein A2) - Rat Genome Database

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Gene: S100A2 (S100 calcium binding protein A2) Canis lupus familiaris
Analyze
Symbol: S100A2
Name: S100 calcium binding protein A2
RGD ID: 12299956
Description: ENCODES a protein that exhibits calcium ion binding (inferred); identical protein binding (inferred); metal ion binding (inferred); INVOLVED IN endothelial cell migration (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: protein S100-A2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,473,788 - 43,482,073 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,471,753 - 43,482,105 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,972,407 - 42,975,089 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,423,522 - 43,431,846 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,421,901 - 43,431,834 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,131,685 - 43,134,367 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,185,366 - 43,188,050 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,468,949 - 43,471,631 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:24631772   PMID:30032202  


Genomics

Comparative Map Data
S100A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,473,788 - 43,482,073 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl743,471,753 - 43,482,105 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,972,407 - 42,975,089 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,423,522 - 43,431,846 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,421,901 - 43,431,834 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,131,685 - 43,134,367 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,185,366 - 43,188,050 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,468,949 - 43,471,631 (+)NCBIUU_Cfam_GSD_1.0
S100A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,561,108 - 153,565,844 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,561,108 - 153,567,890 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,533,584 - 153,538,320 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,800,208 - 151,804,930 (-)NCBINCBI36Build 36hg18NCBI36
Build 341150,346,659 - 150,351,379NCBI
Celera1126,604,841 - 126,609,575 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,896,843 - 124,901,576 (-)NCBIHuRef
CHM1_11154,929,533 - 154,934,268 (-)NCBICHM1_1
T2T-CHM13v2.01152,698,363 - 152,703,111 (-)NCBIT2T-CHM13v2.0
S100a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,497,554 - 90,498,815 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,467,670 - 90,498,838 (+)EnsemblGRCm39 Ensembl
GRCm38390,590,247 - 90,591,508 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,560,363 - 90,591,531 (+)EnsemblGRCm38mm10GRCm38
MGSCv37390,394,169 - 90,395,430 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,676,174 - 90,678,885 (+)NCBIMGSCv36mm8
Celera390,631,704 - 90,632,964 (+)NCBICelera
Cytogenetic Map3F1NCBI
S100a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,374,659 - 178,375,903 (+)NCBIGRCr8
mRatBN7.22176,077,081 - 176,078,325 (+)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx2183,217,245 - 183,218,489 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,239,513 - 181,240,757 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,839,384 - 175,840,626 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,981,650 - 189,985,109 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02209,417,327 - 209,418,672 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2170,010,050 - 170,013,509 (+)NCBICelera
Cytogenetic Map2q34NCBI
S100A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,241,876 - 96,272,571 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1195,977,108 - 96,007,757 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,916,535 - 128,942,052 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,545,370 - 132,550,998 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,545,370 - 132,550,083 (-)Ensemblpanpan1.1panPan2
S100a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,340,374 - 24,345,282 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,370,425 - 3,373,572 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,370,756 - 3,373,351 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl496,073,232 - 96,076,817 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1496,073,496 - 96,076,825 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,922,473 - 104,925,766 (-)NCBISscrofa10.2Sscrofa10.2susScr3
S100A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,238,870 - 10,243,072 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,240,451 - 10,243,294 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,629,582 - 9,634,419 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in S100A2
113 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000043636   ⟹   ENSCAFP00000040657
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl743,479,435 - 43,482,105 (+)Ensembl
Ensembl Acc Id: ENSCAFT00000082687   ⟹   ENSCAFP00000046914
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl743,471,753 - 43,482,105 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845003550   ⟹   ENSCAFP00845002819
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl743,421,901 - 43,431,834 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845003555   ⟹   ENSCAFP00845002823
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl743,425,851 - 43,431,834 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845003564   ⟹   ENSCAFP00845002829
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl743,429,164 - 43,431,834 (+)Ensembl
RefSeq Acc Id: NM_001362600   ⟹   NP_001349529
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha742,972,407 - 42,975,089 (+)NCBI
ROS_Cfam_1.0743,429,164 - 43,431,846 (+)NCBI
UMICH_Zoey_3.1743,131,685 - 43,134,367 (+)NCBI
UNSW_CanFamBas_1.0743,185,366 - 43,188,050 (+)NCBI
UU_Cfam_GSD_1.0743,468,949 - 43,471,631 (+)NCBI
RefSeq Acc Id: XM_038670563   ⟹   XP_038526491
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0743,426,594 - 43,431,802 (+)NCBI
RefSeq Acc Id: XM_038670564   ⟹   XP_038526492
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0743,427,232 - 43,431,802 (+)NCBI
RefSeq Acc Id: XM_038670565   ⟹   XP_038526493
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0743,423,522 - 43,431,802 (+)NCBI
RefSeq Acc Id: XM_038670566   ⟹   XP_038526494
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0743,426,191 - 43,431,802 (+)NCBI
RefSeq Acc Id: XM_038670567   ⟹   XP_038526495
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0743,426,296 - 43,431,802 (+)NCBI
Ensembl Acc Id: ENSCAFP00000040657   ⟸   ENSCAFT00000043636
Ensembl Acc Id: ENSCAFP00000046914   ⟸   ENSCAFT00000082687
RefSeq Acc Id: NP_001349529   ⟸   NM_001362600
- UniProtKB: A0A8C0P2M5 (UniProtKB/TrEMBL),   A0A8I3MK10 (UniProtKB/TrEMBL),   A0A8I3MJM1 (UniProtKB/TrEMBL),   A0A8P0TS24 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526493   ⟸   XM_038670565
- Peptide Label: isoform X2
- UniProtKB: A0A8C0P2M5 (UniProtKB/TrEMBL),   A0A8I3MK10 (UniProtKB/TrEMBL),   A0A8I3MJM1 (UniProtKB/TrEMBL),   A0A8P0TS24 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526494   ⟸   XM_038670566
- Peptide Label: isoform X2
- UniProtKB: A0A8C0P2M5 (UniProtKB/TrEMBL),   A0A8I3MK10 (UniProtKB/TrEMBL),   A0A8I3MJM1 (UniProtKB/TrEMBL),   A0A8P0TS24 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526495   ⟸   XM_038670567
- Peptide Label: isoform X2
- UniProtKB: A0A8C0P2M5 (UniProtKB/TrEMBL),   A0A8I3MK10 (UniProtKB/TrEMBL),   A0A8I3MJM1 (UniProtKB/TrEMBL),   A0A8P0TS24 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526491   ⟸   XM_038670563
- Peptide Label: isoform X1
- UniProtKB: A0A8C0QDJ3 (UniProtKB/TrEMBL),   A0A8I3N0Q2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038526492   ⟸   XM_038670564
- Peptide Label: isoform X2
- UniProtKB: A0A8C0P2M5 (UniProtKB/TrEMBL),   A0A8I3MK10 (UniProtKB/TrEMBL),   A0A8I3MJM1 (UniProtKB/TrEMBL),   A0A8P0TS24 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845002823   ⟸   ENSCAFT00845003555
Ensembl Acc Id: ENSCAFP00845002829   ⟸   ENSCAFT00845003564
Ensembl Acc Id: ENSCAFP00845002819   ⟸   ENSCAFT00845003550
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000032326 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030020163 UniProtKB/TrEMBL
  ENSCAFG00040003435 UniProtKB/TrEMBL
  ENSCAFG00845002036 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000043636.3 UniProtKB/TrEMBL
  ENSCAFT00000082687.2 UniProtKB/TrEMBL
  ENSCAFT00000101217.1 UniProtKB/TrEMBL
  ENSCAFT00000105056.1 UniProtKB/TrEMBL
  ENSCAFT00030037040.1 UniProtKB/TrEMBL
  ENSCAFT00040006536.1 UniProtKB/TrEMBL
  ENSCAFT00040006544.1 UniProtKB/TrEMBL
  ENSCAFT00845003550.1 UniProtKB/TrEMBL
  ENSCAFT00845003555 ENTREZGENE
  ENSCAFT00845003555.1 UniProtKB/TrEMBL
  ENSCAFT00845003564 ENTREZGENE
  ENSCAFT00845003564.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  S-100_dom UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
NCBI Gene S100A2 ENTREZGENE
PANTHER PROTEIN S100-A2 UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/TrEMBL
Pfam S_100 UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
  S100_CABP UniProtKB/TrEMBL
SMART S_100 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8C0P2M5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0QDJ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MJM1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MK10 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N0Q2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NX48_CANLF UniProtKB/TrEMBL
  A0A8P0TS24 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:45828 ENTREZGENE