OR6M1 (olfactory receptor family 6 subfamily M member 1) - Rat Genome Database

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Gene: OR6M1 (olfactory receptor family 6 subfamily M member 1) Canis lupus familiaris
Analyze
Symbol: OR6M1
Name: olfactory receptor family 6 subfamily M member 1
RGD ID: 12294587
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: cOR6M7; cOR6M7 olfactory receptor family 6 subfamily M-like; LOC489350; olfactory receptor 6M1
RGD Orthologs
Human
Chinchilla
Bonobo
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1510,649,645 - 10,650,586 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl510,649,645 - 10,650,586 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha510,705,792 - 10,706,733 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0510,599,799 - 10,600,740 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl510,599,799 - 10,600,740 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1510,704,395 - 10,705,336 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0510,634,806 - 10,635,747 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0510,679,944 - 10,680,885 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14962662   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
OR6M1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1510,649,645 - 10,650,586 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl510,649,645 - 10,650,586 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha510,705,792 - 10,706,733 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0510,599,799 - 10,600,740 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl510,599,799 - 10,600,740 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1510,704,395 - 10,705,336 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0510,634,806 - 10,635,747 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0510,679,944 - 10,680,885 (+)NCBIUU_Cfam_GSD_1.0
OR6M1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811123,805,408 - 123,806,349 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11123,805,408 - 123,806,349 (-)EnsemblGRCh38hg38GRCh38
GRCh3711123,676,116 - 123,677,057 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611123,181,326 - 123,182,267 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411123,181,325 - 123,182,267NCBI
Celera11120,835,524 - 120,836,465 (-)NCBICelera
Cytogenetic Map11q24.1NCBI
HuRef11119,617,315 - 119,618,256 (-)NCBIHuRef
CHM1_111123,562,546 - 123,563,487 (-)NCBICHM1_1
T2T-CHM13v2.011123,834,191 - 123,835,132 (-)NCBIT2T-CHM13v2.0
LOC102027959
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541224,524,602 - 24,525,549 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541224,524,602 - 24,525,549 (-)NCBIChiLan1.0ChiLan1.0
LOC100971476
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29124,501,646 - 124,504,323 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111125,606,238 - 125,608,914 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011118,633,962 - 118,635,927 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111122,552,086 - 122,553,124 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11122,552,151 - 122,553,092 (-)Ensemblpanpan1.1panPan2
LOC101955003
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947105,326,653 - 105,327,599 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365428,248,067 - 8,249,008 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365428,248,062 - 8,249,008 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC100513369
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl950,634,384 - 50,635,262 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1950,633,118 - 50,635,489 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2955,923,783 - 55,927,931 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC101698368
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248801,312,378 - 1,313,325 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248801,312,378 - 1,313,325 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in OR6M1
11 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
respiratory system
1 2 1 1 1 1 4 3 1

Sequence


Ensembl Acc Id: ENSCAFT00000018237   ⟹   ENSCAFP00000031296
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl510,649,645 - 10,650,586 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845021791   ⟹   ENSCAFP00845017139
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl510,599,799 - 10,600,740 (+)Ensembl
RefSeq Acc Id: NM_001388803   ⟹   NP_001375732
RefSeq Status: INFERRED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha510,705,792 - 10,706,733 (+)NCBI
ROS_Cfam_1.0510,599,799 - 10,600,740 (+)NCBI
UMICH_Zoey_3.1510,704,395 - 10,705,336 (+)NCBI
UNSW_CanFamBas_1.0510,634,806 - 10,635,747 (+)NCBI
UU_Cfam_GSD_1.0510,679,944 - 10,680,885 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001375732 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000031296.2
  ENSCAFP00040016645.1
  ENSCAFP00845017139
  ENSCAFP00845017139.1
Ensembl Acc Id: ENSCAFP00000031296   ⟸   ENSCAFT00000018237
RefSeq Acc Id: NP_001375732   ⟸   NM_001388803
- UniProtKB: A0A8C0QYX9 (UniProtKB/TrEMBL),   A0A8C0S6J2 (UniProtKB/TrEMBL),   A0A8I3RZA0 (UniProtKB/TrEMBL),   A0A8P0SPS7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845017139   ⟸   ENSCAFT00845021791
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011497 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040010369 UniProtKB/TrEMBL
  ENSCAFG00845012263 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000018237.4 UniProtKB/TrEMBL
  ENSCAFT00040019180.1 UniProtKB/TrEMBL
  ENSCAFT00845021791 ENTREZGENE
  ENSCAFT00845021791.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfact_rcpt_6C-like UniProtKB/TrEMBL
NCBI Gene LOC489350 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR 6M1 UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0QYX9 ENTREZGENE
  A0A8C0S6J2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RZA0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SPS7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:97127 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-18 OR6M1  olfactory receptor family 6 subfamily M member 1  LOC489350  cOR6M7 olfactory receptor family 6 subfamily M-like  Symbol and/or name change 5135510 APPROVED