LOC489647 (cadherin-1-like) - Rat Genome Database

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Gene: LOC489647 (cadherin-1-like) Canis lupus familiaris
Analyze
Symbol: LOC489647
Name: cadherin-1-like
RGD ID: 12288752
Description: ENCODES a protein that exhibits calcium ion binding (inferred); hydrolase activity (inferred); hydroxyisourate hydrolase activity (inferred); INVOLVED IN homophilic cell adhesion via plasma membrane adhesion molecules (inferred); purine nucleobase metabolic process (inferred); FOUND IN desmosome (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1563,571,991 - 63,589,031 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha563,585,353 - 63,602,401 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0563,800,202 - 63,817,257 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1563,820,637 - 63,837,687 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0563,658,463 - 63,675,521 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0564,064,481 - 64,081,554 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC489647
166 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 22 22 16 6 6 6 6 30 19 11 14 10

Sequence


RefSeq Acc Id: XM_038476802   ⟹   XP_038332730
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1563,820,637 - 63,837,687 (+)NCBI
RefSeq Acc Id: XM_038537960   ⟹   XP_038393888
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0564,064,481 - 64,081,554 (+)NCBI
RefSeq Acc Id: XM_038602093   ⟹   XP_038458021
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0563,658,463 - 63,675,521 (+)NCBI
RefSeq Acc Id: XM_038666700   ⟹   XP_038522628
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0563,800,202 - 63,817,257 (+)NCBI
RefSeq Acc Id: XM_546767   ⟹   XP_546767
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1563,571,991 - 63,589,031 (+)NCBI
Dog10K_Boxer_Tasha563,585,353 - 63,602,401 (+)NCBI
Sequence:
RefSeq Acc Id: XP_546767   ⟸   XM_546767
- UniProtKB: A0A8C0MLK2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038332730   ⟸   XM_038476802
RefSeq Acc Id: XP_038458021   ⟸   XM_038602093
RefSeq Acc Id: XP_038522628   ⟸   XM_038666700
- UniProtKB: A0A8C0MLK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038393888   ⟸   XM_038537960
- UniProtKB: A0A8C0MLK2 (UniProtKB/TrEMBL)
Protein Domains
Cadherin


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000024062 UniProtKB/TrEMBL
  ENSCAFG00030008510 UniProtKB/TrEMBL
  ENSCAFG00040021848 UniProtKB/TrEMBL
  ENSCAFG00845000874 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000032332.5 UniProtKB/TrEMBL
  ENSCAFT00030015610.1 UniProtKB/TrEMBL
  ENSCAFT00030015690.1 UniProtKB/TrEMBL
  ENSCAFT00030015785.1 UniProtKB/TrEMBL
  ENSCAFT00040040553.1 UniProtKB/TrEMBL
  ENSCAFT00845001462.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.180 UniProtKB/TrEMBL
  Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like_dom UniProtKB/TrEMBL
  Cadherin-like_sf UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Hydroxyisourate_hydrolase UniProtKB/TrEMBL
  Transthyretin/HIU_hydrolase UniProtKB/TrEMBL
  Transthyretin/HIU_hydrolase_d UniProtKB/TrEMBL
  Transthyretin/HIU_hydrolase_sf UniProtKB/TrEMBL
  Transthyretin_CS UniProtKB/TrEMBL
NCBI Gene LOC489647 ENTREZGENE
PANTHER CADHERIN-1 UniProtKB/TrEMBL
  PTHR24027 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Transthyretin UniProtKB/TrEMBL
PRINTS CADHERIN UniProtKB/TrEMBL
  TRNSTHYRETIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
  TRANSTHYRETIN_2 UniProtKB/TrEMBL
SMART SM00112 UniProtKB/TrEMBL
  TR_THY UniProtKB/TrEMBL
Superfamily-SCOP SSF49313 UniProtKB/TrEMBL
  SSF49472 UniProtKB/TrEMBL
UniProt A0A8C0MLK2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0MSE1_CANLF UniProtKB/TrEMBL
  A0A8C0MZB2_CANLF UniProtKB/TrEMBL
  A0A8C0TF92_CANLF UniProtKB/TrEMBL
  A0A8I3RR39_CANLF UniProtKB/TrEMBL
UniProt Secondary A0A8P0SPA5 UniProtKB/TrEMBL