CHST2 (carbohydrate sulfotransferase 2) - Rat Genome Database

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Gene: CHST2 (carbohydrate sulfotransferase 2) Canis lupus familiaris
Analyze
Symbol: CHST2
Name: carbohydrate sulfotransferase 2
RGD ID: 12285202
Description: ENCODES a protein that exhibits N-acetylglucosamine 6-O-sulfotransferase activity (inferred); structural constituent of ribosome (inferred); sulfotransferase activity (inferred); INVOLVED IN carbohydrate metabolic process (inferred); N-acetylglucosamine metabolic process (inferred); positive regulation of leukocyte tethering or rolling (inferred); FOUND IN cytosol (inferred); Golgi apparatus (inferred); Golgi membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12338,695,627 - 38,701,216 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2338,621,314 - 38,625,198 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02339,227,491 - 39,231,375 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2339,227,491 - 39,229,146 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12338,910,900 - 38,914,781 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02338,991,867 - 38,995,743 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02339,230,215 - 39,234,094 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CHST2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12338,695,627 - 38,701,216 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2338,621,314 - 38,625,198 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02339,227,491 - 39,231,375 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2339,227,491 - 39,229,146 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12338,910,900 - 38,914,781 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02338,991,867 - 38,995,743 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02339,230,215 - 39,234,094 (+)NCBIUU_Cfam_GSD_1.0
CHST2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383143,119,771 - 143,124,014 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3143,119,771 - 143,124,014 (+)EnsemblGRCh38hg38GRCh38
GRCh373142,838,613 - 142,842,856 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363144,321,358 - 144,324,502 (+)NCBINCBI36Build 36hg18NCBI36
Build 343144,322,006 - 144,324,496NCBI
Celera3141,262,068 - 141,265,212 (+)NCBICelera
Cytogenetic Map3q24NCBI
HuRef3140,210,883 - 140,215,121 (+)NCBIHuRef
CHM1_13142,801,465 - 142,805,703 (+)NCBICHM1_1
T2T-CHM13v2.03145,867,169 - 145,871,412 (+)NCBIT2T-CHM13v2.0
Chst2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39995,282,979 - 95,289,323 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl995,281,345 - 95,288,775 (-)EnsemblGRCm39 Ensembl
GRCm38995,400,926 - 95,407,270 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl995,399,292 - 95,406,722 (-)EnsemblGRCm38mm10GRCm38
MGSCv37995,301,345 - 95,307,689 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36995,213,853 - 95,216,074 (-)NCBIMGSCv36mm8
Celera994,964,957 - 94,971,316 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
cM Map950.11NCBI
Chst2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88104,839,716 - 104,845,961 (-)NCBIGRCr8
mRatBN7.2895,960,067 - 95,966,312 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl895,959,826 - 95,966,955 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8101,631,794 - 101,638,045 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0899,831,037 - 99,837,288 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0897,669,982 - 97,676,233 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08103,186,759 - 103,190,612 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8103,188,651 - 103,190,243 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08102,646,453 - 102,650,752 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48100,497,213 - 100,498,704 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18100,516,681 - 100,518,165 (-)NCBI
Celera895,411,023 - 95,415,742 (-)NCBICelera
Cytogenetic Map8q31NCBI
Chst2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555082,823,399 - 2,824,925 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555082,821,724 - 2,824,926 (-)NCBIChiLan1.0ChiLan1.0
CHST2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22141,027,310 - 141,030,527 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13141,032,042 - 141,035,258 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03140,149,509 - 140,153,162 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13147,740,544 - 147,743,914 (+)NCBIpanpan1.1PanPan1.1panPan2
Chst2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560277,952,667 - 77,956,564 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365404,692,517 - 4,694,109 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365404,692,450 - 4,696,347 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1383,820,112 - 83,821,909 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11383,818,652 - 83,822,135 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21391,593,448 - 91,596,919 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHST2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11547,511,401 - 47,515,040 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1547,511,972 - 47,513,564 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604120,444,268 - 20,447,912 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chst2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473019,751,731 - 19,753,317 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473019,750,770 - 19,754,366 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CHST2
75 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00845051728   ⟹   ENSCAFP00845040586
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2339,227,491 - 39,229,146 (+)Ensembl
RefSeq Acc Id: XM_038432577   ⟹   XP_038288505
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02339,227,491 - 39,231,375 (+)NCBI
RefSeq Acc Id: XM_038457311   ⟹   XP_038313239
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2338,621,314 - 38,625,198 (+)NCBI
RefSeq Acc Id: XM_038507881   ⟹   XP_038363809
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12338,910,900 - 38,914,781 (+)NCBI
RefSeq Acc Id: XM_038571122   ⟹   XP_038427050
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02339,230,215 - 39,234,094 (+)NCBI
RefSeq Acc Id: XM_038635313   ⟹   XP_038491241
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02338,991,867 - 38,995,743 (+)NCBI
RefSeq Acc Id: XP_038363809   ⟸   XM_038507881
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038491241   ⟸   XM_038635313
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038288505   ⟸   XM_038432577
- Peptide Label: isoform X1
- UniProtKB: A0A8I3Q2N8 (UniProtKB/TrEMBL),   A0A8C0QCW0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038313239   ⟸   XM_038457311
- Peptide Label: isoform X2
- UniProtKB: A0A8P0TPY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038427050   ⟸   XM_038571122
- Peptide Label: isoform X1
- UniProtKB: A0A8C0QCW0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845040586   ⟸   ENSCAFT00845051728
Protein Domains
Sulfotransferase

Promoters
RGD ID:13687472
Promoter ID:EPDNEW_C5539
Type:multiple initiation site
Name:CHST2_1
Description:carbohydrate sulfotransferase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12338,695,690 - 38,695,750EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000050162 UniProtKB/TrEMBL
  ENSCAFG00040007728 UniProtKB/TrEMBL
  ENSCAFG00845029239 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000099169.1 UniProtKB/TrEMBL
  ENSCAFT00040014363.1 UniProtKB/TrEMBL
  ENSCAFT00845051728 ENTREZGENE
  ENSCAFT00845051728.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro Carbohydrate_sulfotransferase UniProtKB/TrEMBL
  Gal/GlcNAc/GalNAc_ST UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
  T.cruzi_P2-like UniProtKB/TrEMBL
NCBI Gene CHST2 ENTREZGENE
PANTHER CARBOHYDRATE SULFOTRANSFERASE UniProtKB/TrEMBL
  CARBOHYDRATE SULFOTRANSFERASE 2 UniProtKB/TrEMBL
Pfam Sulfotransfer_1 UniProtKB/TrEMBL
PIRSF Carbohydrate_sulfotransferase UniProtKB/TrEMBL
PRINTS RIBOSOMALP2 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C0QCW0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q2N8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0TPY7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:39254 ENTREZGENE