Chst2 (carbohydrate sulfotransferase 2) - Rat Genome Database

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Gene: Chst2 (carbohydrate sulfotransferase 2) Chinchilla lanigera
Analyze
Symbol: Chst2
Name: carbohydrate sulfotransferase 2
RGD ID: 9036916
Description: ENCODES a protein that exhibits N-acetylglucosamine 6-O-sulfotransferase activity (ortholog); sulfotransferase activity (ortholog); INVOLVED IN N-acetylglucosamine metabolic process (ortholog); positive regulation of leukocyte tethering or rolling (ortholog); sulfur compound metabolic process (ortholog); FOUND IN cytosol (ortholog); Golgi apparatus (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555082,823,399 - 2,824,925 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555082,821,724 - 2,824,926 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISS annotations to Chinchilla, Squirrel, Bonobo and/or Dog genes from Human gene annotations

Genomics

Comparative Map Data
Chst2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555082,823,399 - 2,824,925 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555082,821,724 - 2,824,926 (-)NCBIChiLan1.0ChiLan1.0
CHST2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383143,119,771 - 143,124,014 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl3143,119,771 - 143,124,014 (+)EnsemblGRCh38hg38GRCh38
GRCh373142,838,613 - 142,842,856 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 363144,321,358 - 144,324,502 (+)NCBINCBI36hg18NCBI36
Build 343144,322,006 - 144,324,496NCBI
Celera3141,262,068 - 141,265,212 (+)NCBI
Cytogenetic Map3q24NCBI
HuRef3140,210,883 - 140,215,121 (+)NCBIHuRef
CHM1_13142,801,465 - 142,805,703 (+)NCBICHM1_1
T2T-CHM13v2.03145,867,169 - 145,871,412 (+)NCBI
Chst2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39995,282,979 - 95,289,323 (-)NCBIGRCm39mm39
GRCm39 Ensembl995,281,345 - 95,288,775 (-)Ensembl
GRCm38995,400,926 - 95,407,270 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl995,399,292 - 95,406,722 (-)EnsemblGRCm38mm10GRCm38
MGSCv37995,301,345 - 95,307,689 (-)NCBIGRCm37mm9NCBIm37
MGSCv36995,213,853 - 95,216,074 (-)NCBImm8
Celera994,964,957 - 94,971,316 (-)NCBICelera
Cytogenetic Map9E3.3NCBI
Chst2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2895,960,067 - 95,965,803 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl895,959,826 - 95,966,955 (-)Ensembl
Rnor_6.08103,186,759 - 103,190,612 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8103,188,651 - 103,190,243 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08102,646,453 - 102,650,752 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48100,497,213 - 100,498,704 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.18100,516,681 - 100,518,165 (-)NCBI
Celera895,411,023 - 95,415,742 (-)NCBICelera
Cytogenetic Map8q31NCBI
CHST2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.13147,740,544 - 147,743,914 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v03140,149,509 - 140,153,162 (+)NCBIMhudiblu_PPA_v0panPan3
CHST2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12338,695,627 - 38,701,216 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2338,621,314 - 38,625,198 (+)NCBI
ROS_Cfam_1.02339,227,491 - 39,231,375 (+)NCBI
ROS_Cfam_1.0 Ensembl2339,227,491 - 39,229,146 (+)Ensembl
UMICH_Zoey_3.12338,910,900 - 38,914,781 (+)NCBI
UNSW_CanFamBas_1.02338,991,867 - 38,995,743 (+)NCBI
UU_Cfam_GSD_1.02339,230,215 - 39,234,094 (+)NCBI
Chst2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560277,952,667 - 77,956,564 (+)NCBI
SpeTri2.0NW_0049365404,692,450 - 4,696,347 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1383,820,112 - 83,821,909 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11383,818,652 - 83,822,135 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21391,593,448 - 91,596,919 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHST2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11547,511,401 - 47,515,040 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1547,511,972 - 47,513,564 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604120,444,268 - 20,447,912 (-)NCBIVero_WHO_p1.0
Chst2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473019,751,731 - 19,753,317 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473019,750,770 - 19,754,366 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000025678   ⟹   ENSCLAP00000025423
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049555082,823,399 - 2,824,925 (-)Ensembl
RefSeq Acc Id: XM_005407731   ⟹   XP_005407788
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049555082,821,724 - 2,824,926 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005407788 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005407788   ⟸   XM_005407731
- Sequence:
RefSeq Acc Id: ENSCLAP00000025423   ⟸   ENSCLAT00000025678
Protein Domains
Sulfotransfer_1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000017504 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSCLAP00000025423 ENTREZGENE
  ENSCLAP00000025423.1 UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000025678 ENTREZGENE
  ENSCLAT00000025678.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro Carbohydrate_sulfotransferase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
NCBI Gene Chst2 ENTREZGENE
Pfam Sulfotransfer_1 UniProtKB/TrEMBL
PIRSF Carbohydrate_sulfotransferase UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8C2YV25_CHILA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Chst2  carbohydrate sulfotransferase 2    carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2  Symbol and/or name change 5135510 APPROVED