LOC484461 (zinc finger protein 234)

Gene: LOC484461 (zinc finger protein 234) Canis lupus familiaris

Analyze

Symbol:

LOC484461 (Ensembl: ZNF227)

Name:

zinc finger protein 234 (Ensembl:zinc finger protein 227)

RGD ID:

12253111

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH ethylmalonic encephalopathy (ortholog); genetic disease (ortholog); schizophrenia (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	111,153,381 - 111,172,097 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	111,154,040 - 111,170,054 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	110,633,211 - 110,651,784 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	111,726,398 - 111,744,958 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	111,667,302 - 111,744,848 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	111,355,949 - 111,374,521 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	110,987,037 - 111,005,601 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	111,869,556 - 111,888,124 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

ethylmalonic encephalopathy (ISO)

genetic disease (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

metal ion binding (IEA)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

LOC484461
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	111,153,381 - 111,172,097 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	111,154,040 - 111,170,054 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	110,633,211 - 110,651,784 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	111,726,398 - 111,744,958 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	111,667,302 - 111,744,848 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	111,355,949 - 111,374,521 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	110,987,037 - 111,005,601 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	111,869,556 - 111,888,124 (-)	NCBI		UU_Cfam_GSD_1.0

ZNF234
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	44,141,554 - 44,160,313 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	44,141,554 - 44,160,313 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	44,645,707 - 44,664,466 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	49,337,618 - 49,354,127 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	49,337,617 - 49,354,114	NCBI
Celera	19	41,449,810 - 41,468,561 (+)	NCBI		Celera
Cytogenetic Map	19	q13.31	NCBI
HuRef	19	41,077,850 - 41,096,601 (+)	NCBI		HuRef
CHM1_1	19	44,647,537 - 44,666,288 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	46,964,407 - 46,983,173 (+)	NCBI		T2T-CHM13v2.0

ZNF234
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	50,304,937 - 50,326,093 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	52,177,143 - 52,198,314 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	41,093,692 - 41,113,296 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	49,700,394 - 49,719,984 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	49,700,599 - 49,718,166 (+)	Ensembl	panpan1.1		panPan2

ZNF234
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	37,631,168 - 37,646,193 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666073	17,179,592 - 17,197,693 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in LOC484461
151 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium
Low	5	5	21	5	6	5	6	6	12	8	10	6
Below cutoff			1	1		1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014119890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014119892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038467942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038467943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038528660	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038528661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038592944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038592945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038656749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038656750	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000048713 ⟹ ENSCAFP00000039845

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	1	111,154,040 - 111,170,054 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845013878 ⟹ ENSCAFP00845010764

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	111,667,302 - 111,743,061 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845013905 ⟹ ENSCAFP00845010779

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	111,667,302 - 111,680,168 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845013969 ⟹ ENSCAFP00845010826

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	111,725,297 - 111,744,848 (-)	Ensembl

RefSeq Acc Id:

XM_014119890 ⟹ XP_013975365

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	111,153,381 - 111,172,097 (-)	NCBI
Dog10K_Boxer_Tasha	1	110,633,211 - 110,651,784 (-)	NCBI

Sequence:

show sequence

ATTCTGGGAGGTGTAGTCCAGACGCTCCGTGCGGTGACTTGCACTTCCGCTCGGGAAGGCGGAT
CTGGTGCGTTCTGGGAGATGTAGTCCAAACGCTCCGTGTGGCGGCAGGCACTTCCCGTCAGGAA
GGCGGATCCGGTGCCTTCTGGGAAGTGTAGTCCAGAAGTTCCATGGTTTCGCAGGCACTTCCGC
TGGGGGGAGTGTGAGGTTGTTACTGAATTTTCTTTGGGAGCAGTGCGTCAGTTCCGCCTCTTCG
GACGCTTCCAAACTTCCTGGATCTGTGCTTGGAACCAGCAGCGAGTGGGCGATTTAGGGGGAAA
GAAGCCTGGACAGAGTACGCAGCCTAACTTCTCAAAAAGAGCTGCGCAGAGATCCAAGGAGTGA
CTCCTTGACTACTACAGCAAGGTTCCACGCACACCACCAGGTGCAGTTCTGCTTTGTGGGATCT
GTGCAACTCAGGACTTGGCCTACCTACCCCCAGAAGGAGGAGGACACATGACCATGTTCAAGGA
GACAGTGACGTTCAAGGATGTGGCAGTGGTCTTCACGGAGGAGGAGCTGGGGCTGCTGGACCCC
GCCCAGAGGAAACTGTATGGAGACGTGATGCTGGAGAACTTCAGGAACCTGATCTCTGTGGGAG
GAAAGATCCAAAATAAGATGAAGACTGTTTTAGAAGCAGAGCCACCTGAAGAGCATTCTTGCTG
GAGGATCTGGCAACAGATTGCAAGTGACTTAAGTAGGTGTCAAGGCTCCGTGATAAAGAGTTCT
CAGCTCCCCAAACAAGGTGATTCACCTGGACATGTTGGGGCAGGGCAGTCTACAACTCACACAG
GCCAGAAACCTGATCAGTGCAGTGAATTTAAGAAATATTTCAGTGATGTCTCCAACTTTGATCT
TCATCAACAAATCCACTCAGGAGTAAAGTCTCATACATGTCGTGAGTGTGGAAAAAGCTTCTGT
TACAGCTCAGCACTTCATATTCATCAGAGAGTTCATTTGGGAGAGAAACGCTATAAGTGTGATG
AGTGTGGTAAGGAATTCAGTCAGAGCTCATGTCTGCAAACCCATCAGAAAGTCCACACTGTAGA
GAAGCCATTCAAATGTGAGAAGTGTGGGAATGGCTTCTGTCGCAGATCAGCACTTAATGTTCAT
TATAAATTGCACATGGAAGAGAAACCTTATAATTGTGACCAATGTGGAAGGGCATTCATTCATG
CTTCACATCTTCAGGAGCATCAGAGAATCCACACTGGGGAGAAACCCTTCAAATGTGATAAATG
TGGTAAGAATTTCCGACGTAGGTCATCACTTAATAGTCACTGTATGGTCCACACGGGAGAAAAA
CTGTACAAATGTGAAGAGTGCGGGAAATGTTTCTTTTGTAGCTCAAATCTTCATATCCATCAGA
AGGGCCACACACGAGAGAAACCTTATAAATGTGAAGAGTGTGGGAAGGGCTTCATTCAACCTTC
ACATTTTCGGGCCCATCAGAGAATCCATACTGGAGAGAAGCCATATGTATGCAAAGTGTGTGGT
AAAGGCTTTACTATGAGTTCAAATCTTCAGGCCCATCAGAGAGTCCACACAGGAGAGAAACCAT
ACAAATGCGATGAGTGTGGGAAGAACTTTGGGACAAAAACCCGTTATCAAGTTCATCTGGTAGT
CCACACAGGAGAGAGACCCTATAAATGTGAGGTATGTGGGAAGGATTTCAGTCAGAGAGCATAT
CTTCAATCCCATCTGAAGACCCACAGTGTAGAGAAACCCTACAAGTGTGAGGAGTGTGGGCAGG
GCTTCAATCAGAGTTCCCGACTTCAGATTCACCAGCTGATCCACACTGGTGAGAAACCACACAA
ATGTGAAGAGTGTGGAAAGGGATTCAATCGTCGAGCAGATCTCAAAATTCACTGCAGAATCCAC
ACAGGAGAGAAACCATTTAATTGTGAGGAGTGTGGGAAAGTATTCAGGCAGGCCGCAAATCTTC
TGGCCCATCAGAGAATCCACAGTGGAGAGAAACCATTCAAATGTGAAGAGTGTGGGAAGAGCTT
TGGTCGTAGTTCACACCTTCAAGCCCATCAAAAAGTCCACACGGGAGAAAAGCCGTACAAATGT
GAGGAGTGCGGGAAGGGCTTCAAGTGGAGCTTGAATCTTGACATGCATCAGAGGGTCCACACAG
GAGAGAAACCCTACAAGTGTGGGGAGTGTGGTAAGCACTTCAGTCAGGCCTCGAGTCTTAAGGT
TCATCAGAGTGTCCACAGTGAAGAGAAACCATACAAATGTGACGTATGTGGCAAGGTCTTCCGT
CACTCTTCACAGCTACAATCTCATCAGCGGGTTCACACAGGGGAGACACCTTACAAGTGTGAGA
CATGTGGCCAGAGCTTCCGTTGGCGATCAAAACTTTCCCATCATCGCAAAACTCATGGTGGCAA
TACAATTTATGAAAGTAACAAGAATGGTAAGAACATCAAAGAATCGTCAGGAAGAAGTTCTCCA
GAATGATGTTTTATAAAACCCTGGATTCTTATTATCATTTAGTCTCATAAGAGAGAAAATACTT
GTGTTAATTTTGTTGGTATTTAAGCAATAATCAAATTTATCTCAGTTTTCACCAGATCACACAG
TGGAGGAACCTTGTAAGTGATGTGATAAGTCTTTGTTCAGAATCACTTAGGAGGTAGTACTTAG
GAAAAGAGTTTGATCTGGCACTTAACACAAGTATAATGATGGGCGTACCAGAATTGATACCCAA
TAGAATGTCAGCTTCATGAGGGCAGGGACTTTGCTGCTAAATCTACACAGCCCTCGAAGCTGGA
GGCATAATTCTAGACCTCCAGTAATATTGCAAAGCTGTGTAAACAAAACAATATGGTACTGGCA
CAAAAATAGACACATAGGTCATTAAACAGAATAGAAAACTCAGAAATGAACCCAAAGTATATGT
TCAGTTAATTTATGACAAAGCAGGAAAGAATAACCAATGGGGGAAAAAAAAGCAGGTTTTTTTT
TTCAACAACTGTTATTGGGAAAACTAGAGAGCAACATGCAAAAGAATGAAATTGAACCATTTTC
TTACATCATACATATAAATAAATCCAAAATAGATTAAAGACCTAAGTGTGATGGGACCTGAAAC
CATAAAAGTCCTTGAAGAAAGCACA

hide sequence

RefSeq Acc Id:

XM_014119892 ⟹ XP_013975367

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	111,153,381 - 111,163,494 (-)	NCBI
Dog10K_Boxer_Tasha	1	110,633,211 - 110,643,328 (-)	NCBI

Sequence:

show sequence

AGACAGTGACGTTCAAGGATGTGGCAGTGGTCTTCACGGAGGAGGAGCTGGGGCTGCTGGACCC
CGCCCAGAGGAAACTGTATGGAGACGTGATGCTGGAGAACTTCAGGAACCTGATCTCTGAGGAA
AGATCCAAAATAAGATGAAGACTGTTTTAGAAGCAGAGCCACCTGAAGAGCATTCTTGCTGGAG
GATCTGGCAACAGATTGCAAGTGACTTAAGTAGGTGTCAAGGCTCCGTGATAAAGAGTTCTCAG
CTCCCCAAACAAGGTGATTCACCTGGACATGTTGGGGCAGGGCAGTCTACAACTCACACAGGCC
AGAAACCTGATCAGTGCAGTGAATTTAAGAAATATTTCAGTGATGTCTCCAACTTTGATCTTCA
TCAACAAATCCACTCAGGAGTAAAGTCTCATACATGTCGTGAGTGTGGAAAAAGCTTCTGTTAC
AGCTCAGCACTTCATATTCATCAGAGAGTTCATTTGGGAGAGAAACGCTATAAGTGTGATGAGT
GTGGTAAGGAATTCAGTCAGAGCTCATGTCTGCAAACCCATCAGAAAGTCCACACTGTAGAGAA
GCCATTCAAATGTGAGAAGTGTGGGAATGGCTTCTGTCGCAGATCAGCACTTAATGTTCATTAT
AAATTGCACATGGAAGAGAAACCTTATAATTGTGACCAATGTGGAAGGGCATTCATTCATGCTT
CACATCTTCAGGAGCATCAGAGAATCCACACTGGGGAGAAACCCTTCAAATGTGATAAATGTGG
TAAGAATTTCCGACGTAGGTCATCACTTAATAGTCACTGTATGGTCCACACGGGAGAAAAACTG
TACAAATGTGAAGAGTGCGGGAAATGTTTCTTTTGTAGCTCAAATCTTCATATCCATCAGAAGG
GCCACACACGAGAGAAACCTTATAAATGTGAAGAGTGTGGGAAGGGCTTCATTCAACCTTCACA
TTTTCGGGCCCATCAGAGAATCCATACTGGAGAGAAGCCATATGTATGCAAAGTGTGTGGTAAA
GGCTTTACTATGAGTTCAAATCTTCAGGCCCATCAGAGAGTCCACACAGGAGAGAAACCATACA
AATGCGATGAGTGTGGGAAGAACTTTGGGACAAAAACCCGTTATCAAGTTCATCTGGTAGTCCA
CACAGGAGAGAGACCCTATAAATGTGAGGTATGTGGGAAGGATTTCAGTCAGAGAGCATATCTT
CAATCCCATCTGAAGACCCACAGTGTAGAGAAACCCTACAAGTGTGAGGAGTGTGGGCAGGGCT
TCAATCAGAGTTCCCGACTTCAGATTCACCAGCTGATCCACACTGGTGAGAAACCACACAAATG
TGAAGAGTGTGGAAAGGGATTCAATCGTCGAGCAGATCTCAAAATTCACTGCAGAATCCACACA
GGAGAGAAACCATTTAATTGTGAGGAGTGTGGGAAAGTATTCAGGCAGGCCGCAAATCTTCTGG
CCCATCAGAGAATCCACAGTGGAGAGAAACCATTCAAATGTGAAGAGTGTGGGAAGAGCTTTGG
TCGTAGTTCACACCTTCAAGCCCATCAAAAAGTCCACACGGGAGAAAAGCCGTACAAATGTGAG
GAGTGCGGGAAGGGCTTCAAGTGGAGCTTGAATCTTGACATGCATCAGAGGGTCCACACAGGAG
AGAAACCCTACAAGTGTGGGGAGTGTGGTAAGCACTTCAGTCAGGCCTCGAGTCTTAAGGTTCA
TCAGAGTGTCCACAGTGAAGAGAAACCATACAAATGTGACGTATGTGGCAAGGTCTTCCGTCAC
TCTTCACAGCTACAATCTCATCAGCGGGTTCACACAGGGGAGACACCTTACAAGTGTGAGACAT
GTGGCCAGAGCTTCCGTTGGCGATCAAAACTTTCCCATCATCGCAAAACTCATGGTGGCAATAC
AATTTATGAAAGTAACAAGAATGGTAAGAACATCAAAGAATCGTCAGGAAGAAGTTCTCCAGAA
TGATGTTTTATAAAACCCTGGATTCTTATTATCATTTAGTCTCATAAGAGAGAAAATACTTGTG
TTAATTTTGTTGGTATTTAAGCAATAATCAAATTTATCTCAGTTTTCACCAGATCACACAGTGG
AGGAACCTTGTAAGTGATGTGATAAGTCTTTGTTCAGAATCACTTAGGAGGTAGTACTTAGGAA
AAGAGTTTGATCTGGCACTTAACACAAGTATAATGATGGGCGTACCAGAATTGATACCCAATAG
AATGTCAGCTTCATGAGGGCAGGGACTTTGCTGCTAAATCTACACAGCCCTCGAAGCTGGAGGC
ATAATTCTAGACCTCCAGTAATATTGCAAAGCTGTGTAAACAAAACAATATGGTACTGGCACAA
AAATAGACACATAGGTCATTAAACAGAATAGAAAACTCAGAAATGAACCCAAAGTATATGTTCA
GTTAATTTATGACAAAGCAGGAAAGAATAACCAATGGGGGAAAAAAAAGCAGGTTTTTTTTTTC
AACAACTGTTATTGGGAAAACTAGAGAGCAACATGCAAAAGAATGAAATTGAACCATTTTCTTA
CATCATACATATAAATAAATCCAAAATAGATTAAAGACCTAAGTGTGATGGGACCTGAAACCAT
AAAAGTCCTTGAAGAAAGCACA

hide sequence

RefSeq Acc Id:

XM_038467942 ⟹ XP_038323870

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	111,355,949 - 111,374,521 (-)	NCBI

RefSeq Acc Id:

XM_038467943 ⟹ XP_038323871

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	1	111,355,949 - 111,366,065 (-)	NCBI

RefSeq Acc Id:

XM_038528660 ⟹ XP_038384588

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	111,869,556 - 111,888,124 (-)	NCBI

RefSeq Acc Id:

XM_038528661 ⟹ XP_038384589

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	1	111,869,556 - 111,879,666 (-)	NCBI

RefSeq Acc Id:

XM_038592944 ⟹ XP_038448872

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	110,987,037 - 111,005,601 (-)	NCBI

RefSeq Acc Id:

XM_038592945 ⟹ XP_038448873

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	1	110,987,037 - 110,997,142 (-)	NCBI

RefSeq Acc Id:

XM_038656749 ⟹ XP_038512677

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	111,726,398 - 111,744,958 (-)	NCBI

RefSeq Acc Id:

XM_038656750 ⟹ XP_038512678

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	111,726,398 - 111,736,515 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_013975365	(Get FASTA)	NCBI Sequence Viewer
	XP_013975367	(Get FASTA)	NCBI Sequence Viewer
	XP_038323870	(Get FASTA)	NCBI Sequence Viewer
	XP_038323871	(Get FASTA)	NCBI Sequence Viewer
	XP_038384588	(Get FASTA)	NCBI Sequence Viewer
	XP_038384589	(Get FASTA)	NCBI Sequence Viewer
	XP_038448872	(Get FASTA)	NCBI Sequence Viewer
	XP_038448873	(Get FASTA)	NCBI Sequence Viewer
	XP_038512677	(Get FASTA)	NCBI Sequence Viewer
	XP_038512678	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000039845.1
	ENSCAFP00030001765.1
	ENSCAFP00845010764.1
	ENSCAFP00845010826
	ENSCAFP00845010826.1

RefSeq Acc Id:	XP_013975365 ⟸ XM_014119890
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3N419 (UniProtKB/TrEMBL), A0A8P0STZ2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTMFKETVTFKDVAVVFTEEELGLLDPAQRKLYGDVMLENFRNLISVGGKIQNKMKTVLEAEPP EEHSCWRIWQQIASDLSRCQGSVIKSSQLPKQGDSPGHVGAGQSTTHTGQKPDQCSEFKKYFSD VSNFDLHQQIHSGVKSHTCRECGKSFCYSSALHIHQRVHLGEKRYKCDECGKEFSQSSCLQTHQ KVHTVEKPFKCEKCGNGFCRRSALNVHYKLHMEEKPYNCDQCGRAFIHASHLQEHQRIHTGEKP FKCDKCGKNFRRRSSLNSHCMVHTGEKLYKCEECGKCFFCSSNLHIHQKGHTREKPYKCEECGK GFIQPSHFRAHQRIHTGEKPYVCKVCGKGFTMSSNLQAHQRVHTGEKPYKCDECGKNFGTKTRY QVHLVVHTGERPYKCEVCGKDFSQRAYLQSHLKTHSVEKPYKCEECGQGFNQSSRLQIHQLIHT GEKPHKCEECGKGFNRRADLKIHCRIHTGEKPFNCEECGKVFRQAANLLAHQRIHSGEKPFKCE ECGKSFGRSSHLQAHQKVHTGEKPYKCEECGKGFKWSLNLDMHQRVHTGEKPYKCGECGKHFSQ ASSLKVHQSVHSEEKPYKCDVCGKVFRHSSQLQSHQRVHTGETPYKCETCGQSFRWRSKLSHHR KTHGGNTIYESNKNGKNIKESSGRSSPE hide sequence

RefSeq Acc Id:	XP_013975367 ⟸ XM_014119892
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LXS9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKTVLEAEPPEEHSCWRIWQQIASDLSRCQGSVIKSSQLPKQGDSPGHVGAGQSTTHTGQKPDQ CSEFKKYFSDVSNFDLHQQIHSGVKSHTCRECGKSFCYSSALHIHQRVHLGEKRYKCDECGKEF SQSSCLQTHQKVHTVEKPFKCEKCGNGFCRRSALNVHYKLHMEEKPYNCDQCGRAFIHASHLQE HQRIHTGEKPFKCDKCGKNFRRRSSLNSHCMVHTGEKLYKCEECGKCFFCSSNLHIHQKGHTRE KPYKCEECGKGFIQPSHFRAHQRIHTGEKPYVCKVCGKGFTMSSNLQAHQRVHTGEKPYKCDEC GKNFGTKTRYQVHLVVHTGERPYKCEVCGKDFSQRAYLQSHLKTHSVEKPYKCEECGQGFNQSS RLQIHQLIHTGEKPHKCEECGKGFNRRADLKIHCRIHTGEKPFNCEECGKVFRQAANLLAHQRI HSGEKPFKCEECGKSFGRSSHLQAHQKVHTGEKPYKCEECGKGFKWSLNLDMHQRVHTGEKPYK CGECGKHFSQASSLKVHQSVHSEEKPYKCDVCGKVFRHSSQLQSHQRVHTGETPYKCETCGQSF RWRSKLSHHRKTHGGNTIYESNKNGKNIKESSGRSSPE hide sequence

RefSeq Acc Id:

ENSCAFP00000039845 ⟸ ENSCAFT00000048713

RefSeq Acc Id:	XP_038323870 ⟸ XM_038467942
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038323871 ⟸ XM_038467943
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038448872 ⟸ XM_038592944
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038448873 ⟸ XM_038592945
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038512677 ⟸ XM_038656749
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I3N419 (UniProtKB/TrEMBL), A0A8P0STZ2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038512678 ⟸ XM_038656750
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LXS9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038384588 ⟸ XM_038528660
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038384589 ⟸ XM_038528661
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0LXS9 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845010764 ⟸ ENSCAFT00845013878

RefSeq Acc Id:

ENSCAFP00845010779 ⟸ ENSCAFT00845013905

RefSeq Acc Id:

ENSCAFP00845010826 ⟸ ENSCAFT00845013969

Protein Domains

C2H2-type KRAB

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000023881	UniProtKB/TrEMBL
	ENSCAFG00000030057	Ensembl
	ENSCAFG00030001155	UniProtKB/TrEMBL
	ENSCAFG00845007887	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000048713.3	UniProtKB/TrEMBL
	ENSCAFT00030001992.1	UniProtKB/TrEMBL
	ENSCAFT00845013878.1	UniProtKB/TrEMBL
	ENSCAFT00845013969	ENTREZGENE
	ENSCAFT00845013969.1	UniProtKB/TrEMBL
Gene3D-CATH	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
KEGG Report	cfa:484461	UniProtKB/TrEMBL
NCBI Gene	LOC484461	ENTREZGENE
PANTHER	GASTRULA ZINC FINGER PROTEIN XLCGF49.1-LIKE-RELATED	UniProtKB/TrEMBL
	GENE 10130-RELATED	UniProtKB/TrEMBL
	ZINC FINGER AND SCAN DOMAIN-CONTAINING	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 239	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN ZIC AND GLI	UniProtKB/TrEMBL
	ZNF44 PROTEIN	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PROSITE	KRAB	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	KRAB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF109640	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A8C0LXS9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MWE8_CANLF	UniProtKB/TrEMBL
	A0A8I3N419	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0STZ2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar