ZNF234 (zinc finger protein 234) - Rat Genome Database

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Gene: ZNF234 (zinc finger protein 234) Pan paniscus
Analyze
Symbol: ZNF234
Name: zinc finger protein 234
RGD ID: 12016865
Description: ENCODES a protein that exhibits metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); ASSOCIATED WITH ethylmalonic encephalopathy (ortholog); genetic disease (ortholog); schizophrenia (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Dog
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22050,304,937 - 50,326,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11952,177,143 - 52,198,314 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01941,093,692 - 41,113,296 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11949,700,394 - 49,719,984 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1949,700,599 - 49,718,166 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZNF234
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22050,304,937 - 50,326,093 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11952,177,143 - 52,198,314 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01941,093,692 - 41,113,296 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11949,700,394 - 49,719,984 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1949,700,599 - 49,718,166 (+)Ensemblpanpan1.1panPan2
ZNF234
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381944,141,554 - 44,160,313 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1944,141,554 - 44,160,313 (+)EnsemblGRCh38hg38GRCh38
GRCh371944,645,707 - 44,664,466 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361949,337,618 - 49,354,127 (+)NCBINCBI36Build 36hg18NCBI36
Build 341949,337,617 - 49,354,114NCBI
Celera1941,449,810 - 41,468,561 (+)NCBICelera
Cytogenetic Map19q13.31NCBI
HuRef1941,077,850 - 41,096,601 (+)NCBIHuRef
CHM1_11944,647,537 - 44,666,288 (+)NCBICHM1_1
T2T-CHM13v2.01946,964,407 - 46,983,173 (+)NCBIT2T-CHM13v2.0
LOC484461
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11111,153,381 - 111,172,097 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1111,154,040 - 111,170,054 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1110,633,211 - 110,651,784 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01111,726,398 - 111,744,958 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1111,667,302 - 111,744,848 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11111,355,949 - 111,374,521 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01110,987,037 - 111,005,601 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01111,869,556 - 111,888,124 (-)NCBIUU_Cfam_GSD_1.0
ZNF234
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1637,631,168 - 37,646,193 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607317,179,592 - 17,197,693 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008970793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008970794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008970795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008970796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008970797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008970798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034944817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055104133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055104135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063600359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063600360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063600361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063600362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063600363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063600364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000037179   ⟹   ENSPPAP00000014493
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1949,700,599 - 49,718,166 (+)Ensembl
RefSeq Acc Id: XM_008970793   ⟹   XP_008969041
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22050,304,952 - 50,326,093 (+)NCBI
NHGRI_mPanPan11952,177,158 - 52,198,314 (+)NCBI
Mhudiblu_PPA_v01941,093,710 - 41,113,296 (+)NCBI
PanPan1.11949,700,416 - 49,719,984 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008970794   ⟹   XP_008969042
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22050,304,937 - 50,326,093 (+)NCBI
NHGRI_mPanPan11952,177,143 - 52,198,314 (+)NCBI
Mhudiblu_PPA_v01941,093,692 - 41,113,296 (+)NCBI
PanPan1.11949,700,394 - 49,719,984 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008970795   ⟹   XP_008969043
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22050,304,979 - 50,326,093 (+)NCBI
NHGRI_mPanPan11952,177,211 - 52,198,314 (+)NCBI
Mhudiblu_PPA_v01941,093,891 - 41,110,845 (+)NCBI
PanPan1.11949,700,599 - 49,718,166 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008970797   ⟹   XP_008969045
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22050,304,974 - 50,326,093 (+)NCBI
NHGRI_mPanPan11952,177,201 - 52,198,314 (+)NCBI
Mhudiblu_PPA_v01941,093,748 - 41,110,845 (+)NCBI
PanPan1.11949,700,453 - 49,718,166 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055104133   ⟹   XP_054960108
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22050,304,937 - 50,326,093 (+)NCBI
NHGRI_mPanPan11952,177,143 - 52,198,314 (+)NCBI
RefSeq Acc Id: XM_055104135   ⟹   XP_054960110
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22050,304,964 - 50,326,093 (+)NCBI
NHGRI_mPanPan11952,177,170 - 52,198,314 (+)NCBI
RefSeq Acc Id: XM_063600359   ⟹   XP_063456429
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22050,304,974 - 50,326,093 (+)NCBI
RefSeq Acc Id: XM_063600360   ⟹   XP_063456430
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22050,304,937 - 50,326,093 (+)NCBI
RefSeq Acc Id: XM_063600361   ⟹   XP_063456431
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22050,304,984 - 50,326,093 (+)NCBI
RefSeq Acc Id: XM_063600362   ⟹   XP_063456432
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22050,304,974 - 50,326,093 (+)NCBI
RefSeq Acc Id: XM_063600363   ⟹   XP_063456433
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22050,304,985 - 50,326,093 (+)NCBI
RefSeq Acc Id: XM_063600364   ⟹   XP_063456434
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22050,304,937 - 50,326,093 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008969042   ⟸   XM_008970794
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008969041   ⟸   XM_008970793
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008969045   ⟸   XM_008970797
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008969043   ⟸   XM_008970795
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSPPAP00000014493   ⟸   ENSPPAT00000037179
RefSeq Acc Id: XP_054960108   ⟸   XM_055104133
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054960110   ⟸   XM_055104135
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063456430   ⟸   XM_063600360
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063456434   ⟸   XM_063600364
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063456429   ⟸   XM_063600359
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063456432   ⟸   XM_063600362
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063456431   ⟸   XM_063600361
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063456433   ⟸   XM_063600363
- Peptide Label: isoform X3
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030412 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000037179.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report pps:103785936 UniProtKB/TrEMBL
NCBI Gene ZNF234 ENTREZGENE
PANTHER REDUCED EXPRESSION 2-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 200 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9AG22_PANPA UniProtKB/TrEMBL