LOC100856126 (U1 small nuclear ribonucleoprotein C-like) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: LOC100856126 (U1 small nuclear ribonucleoprotein C-like) Canis lupus familiaris
Analyze
Symbol: LOC100856126
Name: U1 small nuclear ribonucleoprotein C-like
RGD ID: 12246900
Description: ENCODES a protein that exhibits mRNA binding (inferred); RNA binding (inferred); U1 snRNA binding (inferred); INVOLVED IN mRNA 5'-splice site recognition (inferred); mRNA splicing, via spliceosome (inferred); spliceosomal snRNP assembly (inferred); FOUND IN commitment complex (inferred); nucleus (inferred); ribonucleoprotein complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: U1 small nuclear ribonucleoprotein C pseudogene
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1726,039,248 - 26,039,982 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha725,571,024 - 25,571,676 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0725,790,481 - 25,791,105 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1725,708,588 - 25,709,239 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0725,775,217 - 25,775,841 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0725,929,041 - 25,929,699 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in LOC100856126
3 total Variants

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_038482617   ⟹   XP_038338545
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1725,708,588 - 25,709,239 (-)NCBI
RefSeq Acc Id: XM_038541773   ⟹   XP_038397701
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0725,929,041 - 25,929,699 (-)NCBI
RefSeq Acc Id: XM_038580458   ⟹   XP_038436386
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha725,571,024 - 25,571,676 (-)NCBI
RefSeq Acc Id: XM_038605897   ⟹   XP_038461825
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0725,775,217 - 25,775,841 (-)NCBI
RefSeq Acc Id: XM_038670607   ⟹   XP_038526535
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0725,790,481 - 25,791,105 (-)NCBI
RefSeq Acc Id: XP_038338545   ⟸   XM_038482617
RefSeq Acc Id: XP_038461825   ⟸   XM_038605897
RefSeq Acc Id: XP_038526535   ⟸   XM_038670607
- UniProtKB: A0A8C0KTX0 (UniProtKB/TrEMBL),   A0A8C0SFT0 (UniProtKB/TrEMBL),   A0A8P0NTD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038436386   ⟸   XM_038580458
- UniProtKB: A0A8C0KTX0 (UniProtKB/TrEMBL),   A0A8C0SFT0 (UniProtKB/TrEMBL),   A0A8P0NTD8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038397701   ⟸   XM_038541773
- UniProtKB: A0A8C0KTX0 (UniProtKB/TrEMBL),   A0A8C0SFT0 (UniProtKB/TrEMBL),   A0A8P0NTD8 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000031775 UniProtKB/TrEMBL
  ENSCAFG00040012629 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000048452.3 UniProtKB/TrEMBL
  ENSCAFT00040023306.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro U1_snRNP-C UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
NCBI Gene LOC100856126 ENTREZGENE
PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C UniProtKB/TrEMBL
  U1 SMALL NUCLEAR RIBONUCLEOPROTEIN C UniProtKB/TrEMBL
PIRSF U1_snRNP-C UniProtKB/TrEMBL
Superfamily-SCOP beta-beta-alpha zinc fingers UniProtKB/TrEMBL
UniProt A0A8C0KTX0 ENTREZGENE
  A0A8C0SFT0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NTD8 ENTREZGENE
UniProt Secondary A0A8P0NTD8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC100856126  U1 small nuclear ribonucleoprotein C-like  LOC100856126  U1 small nuclear ribonucleoprotein C pseudogene  Symbol and/or name change 5135510 APPROVED