CMC4 (C-X9-C motif containing 4) - Rat Genome Database

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Gene: CMC4 (C-X9-C motif containing 4) Canis lupus familiaris
Analyze
Symbol: CMC4
Name: C-X9-C motif containing 4
RGD ID: 12220563
Description: ASSOCIATED WITH adrenoleukodystrophy (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-x(9)-C motif containing 4 homolog; cx9C motif-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X123,071,076 - 123,080,799 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX108,064,456 - 108,074,186 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X126,198,629 - 126,208,364 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX126,198,634 - 126,208,364 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X121,946,517 - 121,956,248 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X124,468,959 - 124,478,687 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X124,189,658 - 124,199,387 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CMC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X123,071,076 - 123,080,799 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX108,064,456 - 108,074,186 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X126,198,629 - 126,208,364 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX126,198,634 - 126,208,364 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X121,946,517 - 121,956,248 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X124,468,959 - 124,478,687 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X124,189,658 - 124,199,387 (-)NCBIUU_Cfam_GSD_1.0
CMC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X155,061,622 - 155,071,136 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX155,061,622 - 155,071,136 (-)EnsemblGRCh38hg38GRCh38
GRCh37X154,289,897 - 154,299,411 (-)NCBIGRCh37GRCh37hg19GRCh37
CeleraX154,448,614 - 154,458,264 (-)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX142,835,131 - 142,844,484 (-)NCBIHuRef
CHM1_1X154,201,524 - 154,211,174 (-)NCBICHM1_1
T2T-CHM13v2.0X153,298,030 - 153,307,544 (-)NCBIT2T-CHM13v2.0
Cmc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X74,448,452 - 74,460,190 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX74,448,452 - 74,460,190 (-)EnsemblGRCm39 Ensembl
GRCm38X75,404,846 - 75,416,584 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX75,404,846 - 75,416,584 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic MapXA7.3NCBI
Cmc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr818139,382 - 147,037 (+)NCBIGRCr8
mRatBN7.218125,308 - 132,163 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl18125,227 - 132,160 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx18137,523 - 143,916 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.018925,364 - 931,757 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.018139,432 - 145,825 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.018407,517 - 414,110 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl18408,219 - 410,098 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.018453,285 - 459,145 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera18119,279 - 125,719 (+)NCBICelera
Cytogenetic Map18p13NCBI
Cmc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955594618,516 - 624,780 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955594618,516 - 624,780 (+)NCBIChiLan1.0ChiLan1.0
CMC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X155,039,550 - 155,048,971 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X155,038,400 - 155,052,579 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X144,540,603 - 144,550,152 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X154,379,475 - 154,388,932 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX154,379,485 - 154,388,932 (-)Ensemblpanpan1.1panPan2
Cmc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X119,964,268 - 119,982,416 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936927320,833 - 341,021 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936927317,417 - 341,016 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CMC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX125,372,941 - 125,376,999 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X125,372,941 - 125,383,272 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X143,099,933 - 143,110,085 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CMC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X129,348,831 - 129,358,601 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX129,349,054 - 129,351,326 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606567,326,930 - 67,336,667 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cmc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624963212,030 - 221,697 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624963212,470 - 221,697 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CMC4
46 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005642044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022415977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038451310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038451311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038451312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038464878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524778 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524779 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038524780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038588744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038653263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000146 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00845053828   ⟹   ENSCAFP00845042306
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX126,198,634 - 126,208,364 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845053836   ⟹   ENSCAFP00845042312
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 EnsemblX126,198,634 - 126,201,099 (-)Ensembl
RefSeq Acc Id: XM_005642044   ⟹   XP_005642101
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X123,071,076 - 123,080,799 (-)NCBI
Dog10K_Boxer_TashaX108,064,456 - 108,074,186 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022415977   ⟹   XP_022271685
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1X123,071,076 - 123,074,659 (-)NCBI
Dog10K_Boxer_TashaX108,064,456 - 108,068,051 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038451310   ⟹   XP_038307238
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X126,198,629 - 126,208,364 (-)NCBI
RefSeq Acc Id: XM_038451311   ⟹   XP_038307239
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X126,198,629 - 126,202,128 (-)NCBI
RefSeq Acc Id: XM_038451312   ⟹   XP_038307240
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0X126,198,629 - 126,202,229 (-)NCBI
RefSeq Acc Id: XM_038464878   ⟹   XP_038320806
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_TashaX108,064,456 - 108,067,950 (-)NCBI
RefSeq Acc Id: XM_038524778   ⟹   XP_038380706
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X121,946,517 - 121,956,248 (-)NCBI
RefSeq Acc Id: XM_038524779   ⟹   XP_038380707
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X121,946,517 - 121,950,013 (-)NCBI
RefSeq Acc Id: XM_038524780   ⟹   XP_038380708
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1X121,946,517 - 121,950,114 (-)NCBI
RefSeq Acc Id: XM_038588742   ⟹   XP_038444670
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X124,189,658 - 124,199,387 (-)NCBI
RefSeq Acc Id: XM_038588743   ⟹   XP_038444671
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X124,189,658 - 124,193,150 (-)NCBI
RefSeq Acc Id: XM_038588744   ⟹   XP_038444672
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0X124,189,658 - 124,193,251 (-)NCBI
RefSeq Acc Id: XM_038653261   ⟹   XP_038509189
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X124,468,959 - 124,478,687 (-)NCBI
RefSeq Acc Id: XM_038653262   ⟹   XP_038509190
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X124,468,959 - 124,472,452 (-)NCBI
RefSeq Acc Id: XM_038653263   ⟹   XP_038509191
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0X124,468,959 - 124,472,553 (-)NCBI
RefSeq Acc Id: XP_005642101   ⟸   XM_005642044
- UniProtKB: A0A8C0QXI2 (UniProtKB/TrEMBL),   A0A8C0TDT8 (UniProtKB/TrEMBL),   A0A8I3Q378 (UniProtKB/TrEMBL),   A0A8I3Q690 (UniProtKB/TrEMBL),   A0A8P0PGC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022271685   ⟸   XM_022415977
- UniProtKB: A0A8C0QXI2 (UniProtKB/TrEMBL),   A0A8C0TDT8 (UniProtKB/TrEMBL),   A0A8I3Q378 (UniProtKB/TrEMBL),   A0A8I3Q690 (UniProtKB/TrEMBL),   A0A8P0PGC6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038380706   ⟸   XM_038524778
RefSeq Acc Id: XP_038380708   ⟸   XM_038524780
RefSeq Acc Id: XP_038380707   ⟸   XM_038524779
RefSeq Acc Id: XP_038509189   ⟸   XM_038653261
RefSeq Acc Id: XP_038509191   ⟸   XM_038653263
RefSeq Acc Id: XP_038509190   ⟸   XM_038653262
RefSeq Acc Id: XP_038307238   ⟸   XM_038451310
- UniProtKB: A0A8C0QXI2 (UniProtKB/TrEMBL),   A0A8C0TDT8 (UniProtKB/TrEMBL),   A0A8I3Q378 (UniProtKB/TrEMBL),   A0A8I3Q690 (UniProtKB/TrEMBL),   A0A8P0PGC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038307240   ⟸   XM_038451312
- UniProtKB: A0A8C0QXI2 (UniProtKB/TrEMBL),   A0A8C0TDT8 (UniProtKB/TrEMBL),   A0A8I3Q378 (UniProtKB/TrEMBL),   A0A8I3Q690 (UniProtKB/TrEMBL),   A0A8P0PGC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038307239   ⟸   XM_038451311
- UniProtKB: A0A8C0QXI2 (UniProtKB/TrEMBL),   A0A8C0TDT8 (UniProtKB/TrEMBL),   A0A8I3Q378 (UniProtKB/TrEMBL),   A0A8I3Q690 (UniProtKB/TrEMBL),   A0A8P0PGC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038320806   ⟸   XM_038464878
- UniProtKB: A0A8C0QXI2 (UniProtKB/TrEMBL),   A0A8C0TDT8 (UniProtKB/TrEMBL),   A0A8I3Q378 (UniProtKB/TrEMBL),   A0A8I3Q690 (UniProtKB/TrEMBL),   A0A8P0PGC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444670   ⟸   XM_038588742
- UniProtKB: A0A8C0QXI2 (UniProtKB/TrEMBL),   A0A8C0TDT8 (UniProtKB/TrEMBL),   A0A8I3Q378 (UniProtKB/TrEMBL),   A0A8I3Q690 (UniProtKB/TrEMBL),   A0A8P0PGC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444672   ⟸   XM_038588744
- UniProtKB: A0A8C0QXI2 (UniProtKB/TrEMBL),   A0A8C0TDT8 (UniProtKB/TrEMBL),   A0A8I3Q378 (UniProtKB/TrEMBL),   A0A8I3Q690 (UniProtKB/TrEMBL),   A0A8P0PGC6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038444671   ⟸   XM_038588743
- UniProtKB: A0A8C0QXI2 (UniProtKB/TrEMBL),   A0A8C0TDT8 (UniProtKB/TrEMBL),   A0A8I3Q378 (UniProtKB/TrEMBL),   A0A8I3Q690 (UniProtKB/TrEMBL),   A0A8P0PGC6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845042306   ⟸   ENSCAFT00845053828
Ensembl Acc Id: ENSCAFP00845042312   ⟸   ENSCAFT00845053836


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000019635 UniProtKB/TrEMBL
  ENSCAFG00030007721 UniProtKB/TrEMBL
  ENSCAFG00040021209 UniProtKB/TrEMBL
  ENSCAFG00845030338 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000031208.5 UniProtKB/TrEMBL
  ENSCAFT00000104342.1 UniProtKB/TrEMBL
  ENSCAFT00030014162.1 UniProtKB/TrEMBL
  ENSCAFT00040039341.1 UniProtKB/TrEMBL
  ENSCAFT00845053828 ENTREZGENE
  ENSCAFT00845053828.1 UniProtKB/TrEMBL
  ENSCAFT00845053836 ENTREZGENE
  ENSCAFT00845053836.1 UniProtKB/TrEMBL
Gene3D-CATH CytochromE C oxidase copper chaperone UniProtKB/TrEMBL
InterPro Cys_alpha_HP_mot_SF UniProtKB/TrEMBL
  MTCP1 UniProtKB/TrEMBL
KEGG Report cfa:612638 UniProtKB/TrEMBL
NCBI Gene CMC4 ENTREZGENE
PANTHER CX9C MOTIF-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
  PTHR15590 UniProtKB/TrEMBL
Pfam MTCP1 UniProtKB/TrEMBL
PROSITE CHCH UniProtKB/TrEMBL
Superfamily-SCOP SSF47072 UniProtKB/TrEMBL
UniProt A0A8C0QXI2 ENTREZGENE
  A0A8C0TDT8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q378 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q690 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PGC6 ENTREZGENE, UniProtKB/TrEMBL