CCNJ (cyclin J) - Rat Genome Database

Name: CCNJ
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: CCNJ (cyclin J) Canis lupus familiaris

Analyze

Symbol:

CCNJ

Name:

cyclin J

RGD ID:

12201633

Description:

ASSOCIATED WITH agammaglobulinemia 4 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cyclin-J

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CCNJ (cyclin J)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB
Mus musculus (house mouse):	Ccnj (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Ccnj (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ccnj (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CCNJ (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ccnj (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CCNJ (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CCNJ (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ccnj (cyclin J)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	9,491,683 - 9,511,585 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	9,491,560 - 9,508,910 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	9,676,087 - 9,696,552 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	9,762,616 - 9,783,120 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	9,762,613 - 9,783,116 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	9,471,374 - 9,491,793 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	9,530,718 - 9,551,393 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	9,674,153 - 9,694,653 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

agammaglobulinemia 4 (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CCNJ
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	28	9,491,683 - 9,511,585 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	28	9,491,560 - 9,508,910 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	28	9,676,087 - 9,696,552 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	28	9,762,616 - 9,783,120 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	28	9,762,613 - 9,783,116 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	28	9,471,374 - 9,491,793 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	28	9,530,718 - 9,551,393 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	28	9,674,153 - 9,694,653 (+)	NCBI		UU_Cfam_GSD_1.0

CCNJ
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	96,043,068 - 96,060,870 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	96,043,394 - 96,060,870 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	97,803,340 - 97,820,627 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	97,793,141 - 97,810,612 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	97,793,143 - 97,810,612	NCBI
Celera	10	91,544,376 - 91,561,843 (+)	NCBI		Celera
Cytogenetic Map	10	q24.1	NCBI
HuRef	10	91,430,738 - 91,448,202 (+)	NCBI		HuRef
CHM1_1	10	98,085,000 - 98,102,468 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	96,922,365 - 96,940,179 (+)	NCBI		T2T-CHM13v2.0

Ccnj
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	19	40,819,345 - 40,837,016 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	19	40,819,723 - 40,837,016 (+)	Ensembl		GRCm39 Ensembl
GRCm38	19	40,830,959 - 40,848,572 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	19	40,831,279 - 40,848,572 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	19	40,905,769 - 40,923,062 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	19	40,884,590 - 40,901,765 (+)	NCBI		MGSCv36	mm8
Celera	19	41,634,343 - 41,651,644 (+)	NCBI		Celera
Cytogenetic Map	19	C3	NCBI
cM Map	19	34.26	NCBI

Ccnj
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	249,608,991 - 249,626,798 (+)	NCBI		GRCr8
mRatBN7.2	1	239,659,588 - 239,677,367 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	1	247,801,930 - 247,819,734 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	254,499,035 - 254,516,839 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	247,152,062 - 247,169,868 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	259,926,537 - 259,944,275 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	260,093,641 - 260,111,254 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	1	259,926,537 - 259,944,271 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	267,536,058 - 267,553,926 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	245,997,221 - 246,015,024 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	246,111,591 - 246,127,025 (+)	NCBI
Celera	1	235,503,312 - 235,521,115 (+)	NCBI		Celera
Cytogenetic Map	1	q54	NCBI

Ccnj
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955507	2,274,702 - 2,293,637 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955507	2,274,695 - 2,293,637 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCNJ
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	107,936,258 - 107,965,108 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	107,943,642 - 107,970,426 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	92,654,210 - 92,672,135 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	96,160,593 - 96,178,091 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	96,160,593 - 96,178,091 (+)	Ensembl	panpan1.1		panPan2

Ccnj
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	37,360,681 - 37,379,455 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936636	3,399,795 - 3,418,579 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936636	3,399,803 - 3,418,579 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCNJ
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	107,505,464 - 107,542,760 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	107,518,663 - 107,542,767 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	117,154,813 - 117,176,800 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCNJ
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	89,203,548 - 89,222,006 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	89,205,134 - 89,222,000 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666048	50,078,674 - 50,096,286 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccnj
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624737	7,431,051 - 7,449,346 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624737	7,431,033 - 7,448,609 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CCNJ
241 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_022411793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038440121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038440122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038440123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038440125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038460644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038460645	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038460646	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038514734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038578367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038578368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038578369	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038578370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038642532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038642533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038642534	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038642535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_543942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_844638	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000298	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000374	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000013415 ⟹ ENSCAFP00000012414

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	28	9,491,560 - 9,508,910 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845046001 ⟹ ENSCAFP00845036115

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	28	9,762,613 - 9,783,116 (+)	Ensembl

RefSeq Acc Id:

XM_022411793 ⟹ XP_022267501

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	28	9,500,240 - 9,511,585 (+)	NCBI
Dog10K_Boxer_Tasha	28	9,677,141 - 9,696,552 (+)	NCBI

Sequence:

show sequence

TCCTGTCTGCTTTTAGCAAAAGAACCTTCTACTGACTACATAATGAGTTGGTTTAATGAACTAA
AGATTCACAGGCAACTACTACAAATGGGAAAGACTTTACTTCTGCAGTAGGCACAGCTCCATGG
TCAGCTGCAAACTTGACTCTGATAAACCAGATTTGTTACCTGATGCAGAATGTACTGGTGGGCC
ATTTGGTGCCTCTTTCTTGTAGCTTCTTCCTGTAACTCCTTTCATGTTAGTACCTTGACTGAAG
AAAAAGAGGGTAAATTTGAAGAAAAAGAAGATAGCGTGCCTAAGCTGGAACAGCTCAACAGCCT
GGGTTGTATGACTAATATGAATCTAGTATTAACAAAGCAAAATTTGCTACATATGGAACTGTTA
TTATTAGAAACCTTTCAGTGGAACCTCTGCCTTCCAACAGCTGCTCATTTCATTGAGTATTATC
TCTCTGAAGCAGTACACGAAACAGATCTTCATGATGGCTGGCCGATGATTTGCTTGGAAAAAAC
GAAACTCTACATGGCCAAGTATGCAGATTATTTCCTGGAAGTATCTTTGCAAGATTATGCCTTT
CTAAATTATGCACCTTCTTTAGTAGCTGCTGCATGTGTGGCTTCTTCAAGGATTATACTTCGTC
TTTCTCCAACGTGGCCCACAAGACTGCATCGTCTTACTGCTTACTCCTGGGACTTTTTAGTGCA
GTGCATTGAACGGCTATTGATCGCACATGATAACGATGTGAAAGAGGCCAACAAGCAGAGAGGA
CAGGCAGGGTCCCAGCCGGCGCAGCTGAGTGTGCTGCAGTCAGCCTCCCAACCCTCACGGCCGG
TTCACTTTCAGCAGCCCCACTATCTCCATCAGACGCACCACACCTCCCTGCAGTACCGCCATCC
TGTAGCAGAACAGCCGAGCTGCCAGCAGATTGGATCTACCACACACACCTCGTCTTACACACTA
CAGACGTGTCCTGCTGGCTTCCAAACTAGTGTTCAGGGCCTTGGGCATGTGCAGACTGGTGTTG
GGATGTCACTGGCAATACCAGTAGAAGTGAAGCCCTGTCTGAATGTTTCTTACAACCGGAGTTA
TCAGATAAACGAACATTACCCTTGCATTACTCCATGCTTTGAAAGGTGATTTTATGTGAAGGTA
ATTCCTGACGCAGACTGTTCTGTGACTTGAAGCTCTGGGGCAAGCTTTTTGTAATCTTCTCTTC
AAAAAGGAAAGGGATTCAGATTGCATCAGAACTCTTCAGATACCAGCATCAGGAAGACAGAATT
TCCCTTTCAGTGCACCACGAATACCTGGGAGGACTGAACAAACACTGCAAACACTTTAACAGTA
TGTATATCGAATCCTGTTAAAACACATCCCTGTGTGACAAAAATTTTAAGCCCTGGCTGATGGT
CCAAATATTTCAAAAATACTCAATACAACAGAAAATTTGGACAGACTCTAAATCGCCATTTTGA
GATTTGACCTGTGGTGGGCTCTGGGCCTAATGTTGGTTTATACATCAGAGACTAATATTTATCT
GTGGACTTGCCAAACGGTCTTTTTATGAAGGAAAGTTACAGTATTAATTTTTGAAGAGGTCTTT
TTTTTTTTTTCTTTTTAATTCTGCAGTTTTGAGTTACATTTTTGATCTACAAATGAATTGTTGA
CTAAGTTTAAACTCATGAATTGCTATGCTATACCGATCTGTGCAGTAAAAAAAAAATTTTTTTT
AGATGAGTTATAACTTCCTATCACAGTATGTAGGTATCTGGATTTATGTACTAAAATTAAGGGT
GGAGTAGATCTCTTAAAATCATGGTCATAAATTTTCATTGTTTTTTTCACCCTAAGCGATCAAC
CTCAAATCTTTAGGATTAAAACACATTTAACTCAGGGAATTTGTACTACTTGGAAACACTTAAC
TGTAATGCAACATGCTTTGGGAATGTTATAGTATGAACTACCTGTATAACATAGGTTAAAATAC
TCCTGCTAGGATGTGTTTTCAACTGAGAACATAATTGTAGCTTAGAATGAATGAAGTGGTTCCT
ATCACTCATAATCCATACATAGGTTTTGCATTTCTCAGTGCAATCAATGATTTATACTCAGATT
TGATATTACACTCGAAGTTTTTTCAAGGAAGGCATAACTGTAAAATGTCAGTACTAGAATAAAG
TCCTGTAGGTTTATTTTGAAGTGGAATGTGGCCAGGGTAGTTCTCAGGTTGTGCTAGAGCAGCA
CTTTGTTCTGTGGAGGACAAGTTCTATAAGCAGCCTTGCAATCCAGCCAGTCTGTGTATTAGGC
AAAGGCCACTTGCATATATTGGCCCCAGAACTGCCCTGGGACATTTCACTGTGTGGGTAATGAG
TGAAAACAGCAATAAGAAGTCATTACAGCAAGGGCAATTTGGGGGGGCGGGGAGAGTTCAGAGG
GAATAAAAAGTAAAAAGAAAGCAAGCATTGTAATAACTGAAACTATACATTGTGCTCTTATCTG
TGGGAGAAGAGAGATTTGGTGGAGGGAAGCTTTCGATTTAAAAATTAGTAAGGTGTGTCTTTTT
GTTTGTGTTTTTTTTTTTTTTTTTTTTTAAAGATAGCACTTGAATAGAAGGGAAACTGCATGGC
AGGTATGTGACTGCCACAATATGCATTTGAAGACAAACTTATTATAAAGATGTTGTGGGTATGC
AGCAGGAGTCTCCGTAATCAAGCCAATGGCTTCTGTTAGGAAGGGAAGGGACTCAACGCAGTAA
TGGACTGATCCAGATGGCTCCAGTGGATAAATGTGGGTGGGTGGCTTCTGCCAGCATGAATTCC
TAGAGAATGTCCTCTCCTTAAAAGAATGGTAATCTTTATAATTAGAGTACATAGGGCATGATGT
GGATTTATGAGTCTGGTAGATTAAAAAAAAAAAAAAACACTCAGGTAAGAACACTCACTCATGG
CAGTTTTCAAGCTTGAAAATTGTTTTCTGAAAGTATCATCGCTTTTCCTCTTTACAGAAGGCTG
CTAATTGGATTTTGGTAGTTCTTACCTCAAGAGAGTTTGAATTATTTGGGGGAAAGTGGGTTCA
AAAGAGAATATATCTTTCACATTCACATTCAGAACCCAGCACCTGGAGTCCAATTTTCAGTATT
TTAACTACCTCAATAATGTTATGAATGTAAGATATTGGGATAGAGATCCCAACTTGAAACAACA
ACCGGTGCCTATGGTAATTTAATGTCTTGTCAAATGCTTTTATTGATTGGTTTAAATGTCATTC
TTGTTATAGAAGAATATGCCTTTTAAAAAGCTTATAACACTTTCCCAGTTTGTATTTAAAAAAG
CTAAAGAACACTGGATTAATTTTTGGGGGGGGTAGAATAAAATAATTAATTGGTTACTATTGCT
GCATACCCAGGGTGGGGTGGGATGGGATGGTTGGAGAATCAGAACTATTTTTAAAACATTAGGT
TTCAATATAAATACAACTCACGACTGCTAGACTTGGGGGATGAGGGTGGGGGGAGTTGTGTGGG
TTTTGTTTTGTTTAATTTATTGGTTAGTCTTTAAAGTAGGTCAATTTTCTTTTTTTTTTTTTTG
AGATTACTGGACCATCATTAAATGTGTACTGTGAAGAGATTAATGATATGTATAAAGGGCTTTA
CCAAAGTCCACTAAATAAACACTACTCAAGTACAGACTGCAAACCAAAATGTATCTGTGTTGTG
ACATTAATTGCAAATAGTGAGTATGGTGCTAAATTCTACACCAATGGAATTAGATGAGTGCTAT
GCACTTAATTTTAAAATAAAATAGTTTTCAGTAAAA

hide sequence

RefSeq Acc Id:

XM_038440121 ⟹ XP_038296049

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	28	9,762,618 - 9,783,120 (+)	NCBI

RefSeq Acc Id:

XM_038440122 ⟹ XP_038296050

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	28	9,762,616 - 9,783,120 (+)	NCBI

RefSeq Acc Id:

XM_038440123 ⟹ XP_038296051

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	28	9,762,616 - 9,783,120 (+)	NCBI

RefSeq Acc Id:

XM_038440125 ⟹ XP_038296053

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	28	9,763,685 - 9,783,120 (+)	NCBI

RefSeq Acc Id:

XM_038460644 ⟹ XP_038316572

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	28	9,676,089 - 9,696,552 (+)	NCBI

RefSeq Acc Id:

XM_038460645 ⟹ XP_038316573

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	28	9,676,087 - 9,696,552 (+)	NCBI

RefSeq Acc Id:

XM_038460646 ⟹ XP_038316574

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	28	9,676,087 - 9,696,552 (+)	NCBI

RefSeq Acc Id:

XM_038514734 ⟹ XP_038370662

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	28	9,471,374 - 9,491,793 (+)	NCBI

RefSeq Acc Id:

XM_038578367 ⟹ XP_038434295

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	28	9,674,155 - 9,694,653 (+)	NCBI

RefSeq Acc Id:

XM_038578368 ⟹ XP_038434296

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	28	9,674,153 - 9,694,653 (+)	NCBI

RefSeq Acc Id:

XM_038578369 ⟹ XP_038434297

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	28	9,674,153 - 9,694,653 (+)	NCBI

RefSeq Acc Id:

XM_038578370 ⟹ XP_038434298

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	28	9,675,214 - 9,694,653 (+)	NCBI

RefSeq Acc Id:

XM_038642532 ⟹ XP_038498460

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	28	9,530,720 - 9,551,393 (+)	NCBI

RefSeq Acc Id:

XM_038642533 ⟹ XP_038498461

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	28	9,530,718 - 9,551,393 (+)	NCBI

RefSeq Acc Id:

XM_038642534 ⟹ XP_038498462

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	28	9,530,718 - 9,551,393 (+)	NCBI

RefSeq Acc Id:

XM_038642535 ⟹ XP_038498463

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	28	9,531,775 - 9,551,393 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_022267501	(Get FASTA)	NCBI Sequence Viewer
	XP_038296049	(Get FASTA)	NCBI Sequence Viewer
	XP_038296050	(Get FASTA)	NCBI Sequence Viewer
	XP_038296051	(Get FASTA)	NCBI Sequence Viewer
	XP_038296053	(Get FASTA)	NCBI Sequence Viewer
	XP_038316572	(Get FASTA)	NCBI Sequence Viewer
	XP_038316573	(Get FASTA)	NCBI Sequence Viewer
	XP_038316574	(Get FASTA)	NCBI Sequence Viewer
	XP_038370662	(Get FASTA)	NCBI Sequence Viewer
	XP_038434295	(Get FASTA)	NCBI Sequence Viewer
	XP_038434296	(Get FASTA)	NCBI Sequence Viewer
	XP_038434297	(Get FASTA)	NCBI Sequence Viewer
	XP_038434298	(Get FASTA)	NCBI Sequence Viewer
	XP_038498460	(Get FASTA)	NCBI Sequence Viewer
	XP_038498461	(Get FASTA)	NCBI Sequence Viewer
	XP_038498462	(Get FASTA)	NCBI Sequence Viewer
	XP_038498463	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000012414.4
	ENSCAFP00030039963.1
	ENSCAFP00040039909.1
	ENSCAFP00845036115
	ENSCAFP00845036115.1

RefSeq Acc Id:

XP_022267501 ⟸ XM_022411793

- Peptide Label:

isoform X4

- Sequence:

show sequence

MYWWAIWCLFLVASSCNSFHVSTLTEEKEGKFEEKEDSVPKLEQLNSLGCMTNMNLVLTKQNLL
HMELLLLETFQWNLCLPTAAHFIEYYLSEAVHETDLHDGWPMICLEKTKLYMAKYADYFLEVSL
QDYAFLNYAPSLVAAACVASSRIILRLSPTWPTRLHRLTAYSWDFLVQCIERLLIAHDNDVKEA
NKQRGQAGSQPAQLSVLQSASQPSRPVHFQQPHYLHQTHHTSLQYRHPVAEQPSCQQIGSTTHT
SSYTLQTCPAGFQTSVQGLGHVQTGVGMSLAIPVEVKPCLNVSYNRSYQINEHYPCITPCFER

hide sequence

Ensembl Acc Id:

ENSCAFP00000012414 ⟸ ENSCAFT00000013415

RefSeq Acc Id:	XP_038370662 ⟸ XM_038514734
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038498461 ⟸ XM_038642533
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038498462 ⟸ XM_038642534
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038498460 ⟸ XM_038642532
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038498463 ⟸ XM_038642535
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038296050 ⟸ XM_038440122
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0TQY2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038296051 ⟸ XM_038440123
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0TQY2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038296049 ⟸ XM_038440121
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0PEN7 (UniProtKB/TrEMBL), A0A8I3Q8N5 (UniProtKB/TrEMBL), A0A8C0TQY2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038296053 ⟸ XM_038440125
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038316573 ⟸ XM_038460645
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0TQY2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038316574 ⟸ XM_038460646
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0TQY2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038316572 ⟸ XM_038460644
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0PEN7 (UniProtKB/TrEMBL), A0A8I3Q8N5 (UniProtKB/TrEMBL), A0A8C0TQY2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038434296 ⟸ XM_038578368
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0TQY2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038434297 ⟸ XM_038578369
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0TQY2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038434295 ⟸ XM_038578367
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0JVP8 (UniProtKB/TrEMBL), A0A8C0TQY2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038434298 ⟸ XM_038578370
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSCAFP00845036115 ⟸ ENSCAFT00845046001

Protein Domains

Cyclin C-terminal Cyclin-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000008454	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030024835	UniProtKB/TrEMBL
	ENSCAFG00040024531	UniProtKB/TrEMBL
	ENSCAFG00845026051	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000013415.4	UniProtKB/TrEMBL
	ENSCAFT00030045749.1	UniProtKB/TrEMBL
	ENSCAFT00040045717.1	UniProtKB/TrEMBL
	ENSCAFT00845046001	ENTREZGENE
	ENSCAFT00845046001.1	UniProtKB/TrEMBL
Gene3D-CATH	Cyclin-like	UniProtKB/TrEMBL
InterPro	Cyclin	UniProtKB/TrEMBL
	Cyclin-like	UniProtKB/TrEMBL
	Cyclin-like_sf	UniProtKB/TrEMBL
	Cyclin_C-dom	UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/TrEMBL
NCBI Gene	CCNJ	ENTREZGENE
PANTHER	PTHR10177	UniProtKB/TrEMBL
	PTHR10177:SF62	UniProtKB/TrEMBL
Pfam	Cyclin_C	UniProtKB/TrEMBL
	Cyclin_N	UniProtKB/TrEMBL
SMART	CYCLIN	UniProtKB/TrEMBL
	Cyclin_C	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47954	UniProtKB/TrEMBL
UniProt	A0A8C0JVP8	ENTREZGENE
	A0A8C0PEN7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0TQY2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3Q8N5	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:38903	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar