CSMD1 (CUB and Sushi multiple domains 1) - Rat Genome Database

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Gene: CSMD1 (CUB and Sushi multiple domains 1) Canis lupus familiaris
Analyze
Symbol: CSMD1
Name: CUB and Sushi multiple domains 1
RGD ID: 12171266
Description: INVOLVED IN conditioned place preference (ortholog); female gonad development (ortholog); gene expression (ortholog); ASSOCIATED WITH amphetamine abuse (ortholog); autism spectrum disorder (ortholog); autistic disorder (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CUB and sushi domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11655,142,990 - 56,673,978 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1655,143,199 - 56,673,679 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1650,656,327 - 52,525,365 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01659,161,533 - 61,032,747 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1659,161,584 - 61,031,894 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11655,272,000 - 57,139,927 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01657,070,471 - 58,938,374 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01657,473,720 - 59,324,300 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
CSMD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11655,142,990 - 56,673,978 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1655,143,199 - 56,673,679 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1650,656,327 - 52,525,365 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01659,161,533 - 61,032,747 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1659,161,584 - 61,031,894 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11655,272,000 - 57,139,927 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01657,070,471 - 58,938,374 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01657,473,720 - 59,324,300 (+)NCBIUU_Cfam_GSD_1.0
CSMD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3882,935,361 - 4,994,914 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl82,935,353 - 4,994,972 (-)EnsemblGRCh38hg38GRCh38
GRCh3782,792,883 - 4,852,436 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3682,780,282 - 4,839,736 (-)NCBINCBI36Build 36hg18NCBI36
Build 3482,782,789 - 4,839,736NCBI
Celera82,767,236 - 4,826,852 (-)NCBICelera
Cytogenetic Map8p23.2NCBI
HuRef82,576,730 - 4,633,499 (-)NCBIHuRef
CHM1_182,881,464 - 4,940,977 (-)NCBICHM1_1
T2T-CHM13v2.082,689,262 - 4,747,707 (-)NCBIT2T-CHM13v2.0
Csmd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39815,942,538 - 17,586,908 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl815,942,537 - 17,585,602 (-)EnsemblGRCm39 Ensembl
GRCm38815,892,538 - 17,535,385 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl815,892,537 - 17,535,586 (-)EnsemblGRCm38mm10GRCm38
MGSCv37815,892,545 - 17,535,385 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36815,895,476 - 17,535,258 (-)NCBIMGSCv36mm8
Celera816,030,216 - 17,667,430 (-)NCBICelera
Cytogenetic Map8A1.1- A1.3NCBI
cM Map88.38NCBI
Csmd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81678,920,549 - 80,520,710 (+)NCBIGRCr8
mRatBN7.21672,218,189 - 73,818,380 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1672,218,503 - 73,817,614 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1677,492,891 - 79,091,788 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01680,946,484 - 82,545,366 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01676,195,914 - 77,794,805 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01677,152,823 - 78,850,222 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1678,539,489 - 78,850,222 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01677,824,236 - 78,025,776 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01676,755,073 - 77,603,096 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01678,123,916 - 78,434,380 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41677,485,217 - 78,605,037 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11677,795,191 - 77,816,111 (+)NCBI
Celera1670,047,120 - 71,640,895 (+)NCBICelera
Cytogenetic Map16q12.5NCBI
Csmd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540355,851,519 - 57,099,067 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540355,809,895 - 57,101,986 (+)NCBIChiLan1.0ChiLan1.0
CSMD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2717,733,347 - 19,803,816 (-)NCBINHGRI_mPanPan1-v2
Mhudiblu_PPA_v082,282,763 - 4,351,724 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.182,835,578 - 3,514,506 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl82,838,803 - 4,923,373 (-)Ensemblpanpan1.1panPan2
Csmd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049431,676,253 - 3,319,713 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366151,679,243 - 3,319,300 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366151,677,845 - 2,063,781 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CSMD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1534,363,758 - 35,023,152 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11534,361,722 - 36,243,762 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21539,332,100 - 39,698,113 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CSMD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.182,806,358 - 4,821,568 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605444,747,279 - 46,904,137 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Csmd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248611,733,220 - 3,244,830 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248611,731,662 - 3,244,884 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CSMD1
36506 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 2 21 17 9 3 5 3 4 24 16 12 14 6

Sequence


Ensembl Acc Id: ENSCAFT00000013885   ⟹   ENSCAFP00000012846
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1655,143,199 - 56,673,679 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845042204   ⟹   ENSCAFP00845033098
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1659,161,584 - 61,031,894 (+)Ensembl
RefSeq Acc Id: XM_038452499   ⟹   XP_038308427
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1650,656,327 - 52,525,365 (-)NCBI
RefSeq Acc Id: XM_038452500   ⟹   XP_038308428
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1650,656,327 - 52,525,365 (-)NCBI
RefSeq Acc Id: XM_038498042   ⟹   XP_038353970
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11655,272,000 - 57,139,927 (-)NCBI
RefSeq Acc Id: XM_038560546   ⟹   XP_038416474
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01657,473,720 - 59,324,300 (+)NCBI
RefSeq Acc Id: XM_038624586   ⟹   XP_038480514
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01657,070,471 - 58,938,374 (+)NCBI
RefSeq Acc Id: XM_038624587   ⟹   XP_038480515
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01657,070,471 - 58,938,374 (+)NCBI
RefSeq Acc Id: XM_038690374   ⟹   XP_038546302
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01659,161,533 - 61,032,747 (+)NCBI
Ensembl Acc Id: ENSCAFP00000012846   ⟸   ENSCAFT00000013885
RefSeq Acc Id: XP_038353970   ⟸   XM_038498042
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038480514   ⟸   XM_038624586
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038480515   ⟸   XM_038624587
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038546302   ⟸   XM_038690374
- Peptide Label: isoform X1
- UniProtKB: A0A8I3PFU9 (UniProtKB/TrEMBL),   A0A8C0MYD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038308428   ⟸   XM_038452500
- Peptide Label: isoform X4
- UniProtKB: A0A8C0MYD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038308427   ⟸   XM_038452499
- Peptide Label: isoform X1
- UniProtKB: A0A8P0SDR7 (UniProtKB/TrEMBL),   A0A8C0MYD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038416474   ⟸   XM_038560546
- Peptide Label: isoform X3
- UniProtKB: A0A8C0MYD9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845033098   ⟸   ENSCAFT00845042204
Protein Domains
CUB   Sushi


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000008686 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030007889 UniProtKB/TrEMBL
  ENSCAFG00845023080 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000013885.5 UniProtKB/TrEMBL
  ENSCAFT00030015264.1 UniProtKB/TrEMBL
  ENSCAFT00845042204 ENTREZGENE
  ENSCAFT00845042204.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.290 UniProtKB/TrEMBL
  Complement Module, domain 1 UniProtKB/TrEMBL
InterPro CUB_dom UniProtKB/TrEMBL
  SEZ6_CSMD_C4BPB_Regulators UniProtKB/TrEMBL
  Sperma_CUB_dom_sf UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/TrEMBL
NCBI Gene CSMD1 ENTREZGENE
PANTHER PROTEIN BETA CHAIN, PUTATIVE-RELATED UniProtKB/TrEMBL
  PROTEIN CBR-CLEC-78 UniProtKB/TrEMBL
Pfam CUB UniProtKB/TrEMBL
  Sushi UniProtKB/TrEMBL
PROSITE CUB UniProtKB/TrEMBL
  SUSHI UniProtKB/TrEMBL
SMART CCP UniProtKB/TrEMBL
  CUB UniProtKB/TrEMBL
Superfamily-SCOP SSF49854 UniProtKB/TrEMBL
  SSF57535 UniProtKB/TrEMBL
UniProt A0A8C0MYD9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PFU9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0SDR7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:39662 ENTREZGENE