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Gene: RNPC3 (RNA binding region (RNP1, RRM) containing 3) Canis lupus familiaris

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Symbol:

RNPC3

Name:

RNA binding region (RNP1, RRM) containing 3

RGD ID:

12168217

Description:

ENCODES a protein that exhibits RNA binding (inferred); ASSOCIATED WITH autistic disorder (ortholog); combined or isolated pituitary growth hormone deficiency 7 (ortholog); genetic disease (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); U12-type spliceosomal complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RNA-binding protein 40; RNA-binding region-containing protein 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	46,960,033 - 47,044,272 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	47,016,038 - 47,044,236 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	49,741,149 - 49,835,539 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	47,287,659 - 47,382,209 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	47,354,657 - 47,382,170 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	47,041,712 - 47,070,204 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	46,950,056 - 47,044,434 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	47,387,818 - 47,482,249 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

combined or isolated pituitary growth hormone deficiency 7 (ISO)

genetic disease (ISO)

isolated growth hormone deficiency (ISO)

Marshall syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mRNA splicing, via spliceosome (IBA)

Cellular Component

nucleoplasm (IEA)

nucleus (IEA)

U12-type spliceosomal complex (IBA,IEA)

Molecular Function

pre-mRNA intronic binding (IBA)

RNA binding (IEA)

U12 snRNA binding (IBA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

RNPC3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	46,960,033 - 47,044,272 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	47,016,038 - 47,044,236 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	49,741,149 - 49,835,539 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	47,287,659 - 47,382,209 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	47,354,657 - 47,382,170 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	47,041,712 - 47,070,204 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	46,950,056 - 47,044,434 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	47,387,818 - 47,482,249 (-)	NCBI		UU_Cfam_GSD_1.0

RNPC3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	103,525,699 - 103,555,239 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	103,525,691 - 103,555,239 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	104,068,321 - 104,097,861 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	103,893,839 - 103,899,384 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	102,260,908 - 102,290,242 (+)	NCBI		Celera
Cytogenetic Map	1	p21.1	NCBI
HuRef	1	102,123,813 - 102,153,095 (+)	NCBI		HuRef
CHM1_1	1	104,183,765 - 104,213,046 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	103,374,641 - 103,404,182 (+)	NCBI		T2T-CHM13v2.0

Rnpc3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	113,398,716 - 113,423,798 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	113,398,716 - 113,423,798 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	113,605,067 - 113,630,149 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	113,605,067 - 113,630,149 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	113,307,985 - 113,333,067 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	113,597,071 - 113,622,153 (-)	NCBI		MGSCv36	mm8
Celera	3	119,998,383 - 120,023,481 (-)	NCBI		Celera
Cytogenetic Map	3	F3	NCBI
cM Map	3	49.35	NCBI

Rnpc3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	204,121,191 - 204,145,128 (-)	NCBI		GRCr8
mRatBN7.2	2	201,432,769 - 201,457,015 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	201,432,684 - 201,456,747 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	209,042,191 - 209,066,128 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	206,937,994 - 206,961,931 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	201,755,009 - 201,778,946 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	216,481,457 - 216,510,051 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	216,481,436 - 216,509,827 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	234,574,802 - 234,603,484 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	209,600,629 - 209,626,600 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	193,966,907 - 193,990,841 (-)	NCBI		Celera
Cytogenetic Map	2	q42	NCBI

Rnpc3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	7,951,841 - 7,971,994 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	7,951,707 - 7,974,623 (+)	NCBI	ChiLan1.0	ChiLan1.0

RNPC3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	123,450,262 - 123,496,382 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	122,607,477 - 122,653,580 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	106,189,351 - 106,219,302 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	105,323,391 - 105,353,352 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	105,323,791 - 105,349,892 (+)	Ensembl	panpan1.1		panPan2

Rnpc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	113,479,124 - 113,508,163 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936730	1,063,516 - 1,085,333 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936730	1,063,719 - 1,086,983 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNPC3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	115,288,276 - 115,311,652 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	115,279,557 - 115,311,960 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	126,587,195 - 126,615,600 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RNPC3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	29,862,583 - 29,893,812 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	29,866,073 - 29,893,431 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	28,262,258 - 28,306,911 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnpc3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624857	6,565,799 - 6,598,514 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624857	6,565,698 - 6,630,612 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in RNPC3
1622 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005621851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014114797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014114798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022420407	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022420408	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022420409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022420410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038479892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038479894	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038479895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038479896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038541179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038553351	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605326	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605327	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038605330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038669974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038669975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038669976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038669977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038669978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038669979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005327223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005327224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005327225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000077	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000031786 ⟹ ENSCAFP00000029595

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	47,016,038 - 47,044,236 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845019007 ⟹ ENSCAFP00845014849

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	47,354,657 - 47,382,170 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845019075 ⟹ ENSCAFP00845014901

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	47,354,657 - 47,382,095 (-)	Ensembl

RefSeq Acc Id:

XM_014114797 ⟹ XP_013970272

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	47,016,908 - 47,044,156 (-)	NCBI
Dog10K_Boxer_Tasha	6	49,807,912 - 49,835,425 (-)	NCBI

Sequence:

show sequence

ATGGCGGCTCCCGAGCAGCCGCTACCGCCCATGTCCAGGGGATGCCAGAGCTCCGCCTCGCTCT
CTCCGCCGCGGGGCGACCGGACCCTTCTAGTGAGGCACCTGCCGGCCGAGCTGACCGCCGAGGA
GAAAGAGGACTTGCTTAAGTACTTCGGGGCTCAGTCGGTGCGCGTCCTGTCGGATAAGGGACGG
CTGAAACATACAGCTTTTGCTACTTTCCCTAATGAAAAGGCAGCTATAAAGGCATTGACAAGAC
TACATCAACTGAAACTTCTAGGTCATACTTTAGTTGTTGAATTTGCAAAAGAGCAAGATCGAGT
TCATTCCCCATGTCCCCCTTCAGACCCTGAAAAAAAGAAAAGATCTGATGACCCTGTGGAAGAT
GATAAAGAAAAGAAAGAACTTGGTTGTATAACCATAGAAAATGGAATTGCACCAAACCATGGGC
TGACTTTTCCTCTGAATTCATGCCTCAAGTATATGTACCCACCACCTTCAAGCACAATCCTAGC
AAACATAGTAAATGCTTTGGCAAGTGTGCCGAAGTTCTATGTACAGGTGCTTCATCTTATGAAT
AAAATGAATTTGCCCACACCATTTGGACCAATAACGGCACGACCTCCCATGTATGAAGACTATA
TGCCATTGCATGCACCTCTTCCACCTGCATCTCCTCAGCCACCAGAGGAACCACCTTTGCCAGA
TGAGGATGAGGAATTATCAAGTAAAGAATCAGAATATGAAAGCAGTGATGATGAAGACCGACAG
AGAATGACCAAACTAATGGAATTAGCAAATCTTCAGCCCAAAAGACCAAAAGCAATAAAGCAGC
ACCATGTGAGAAAAAAGCAAAAAATAAAGGATATGTTGAAAACACCTTCATCTGCTTCACATGG
CAGTTTACATCCAGTGCTGTTACCTTCGGATGTATTTGACCAACCACAGCCTGTAGGTAATAAG
AAAATTGAATTTCATATATCTACTGACATGACATCTGCATTTAAGAAAGATCTAGAAAAAGAAC
AAAATTGTGAAGAACAAAGTTATGATTTGCCTGCTCCTGAAGGTGATGCCCCCAATGTAGGATT
TGGAAAAATCTTCCCCAAACCTAATTTGAACATCACAGAAGAGATTAAAGAGGACTGTGATGAA
ATGCCATCAGAATGTATATCTAGAAGGGAGTTGGAAAAAGGCAGAATTTCTAGAGAAGAAATGG
AAACACTGTCAGTTTTCAGAAGTTATGAACCTGGTGAACCAAACTGTAGAGTTTATGTAAAGAA
TTTAGCTAAACATGTTCAAGAAAAGGACCTTAAATTTATTTTTGGGAGATATGTTGACTTTTCA
TCAGAAACACAACGGATAATGTTTGATATACGTTTGATGAAAGAAGGTCGCATGAAAGGACAAG
CTTTCATTGGACTTCCAAATGAAAAAGCAGCAGCAAAAGCCTTAAAGGAAGCTAATGGATATGT
TCTTTTTGGAAAACCTATGGTGGTTCAATTCGCTCGATCTGCTAGACCAAAACAAGATTCTAAA
GAAGGAAAAAGGAAGTGTTAAAAATTAGTAAAGAAGCATTCCTGCGTAAATACTGCTGTAATAC
TGTCATACAAAGTGTATCCTTTCTTGTTGTATCCTTTTTGGGGCAGTGTTTTCTGTTTTTCCTA
GAAATGTTTTGTCCCCCATTGATTCAGATTAAGCAATATTTTTTTATAATTTATTCAGAAGATA
TATTTCTAAAATTATCAGTGTTGATTGGACAAATCATTTATCTCCTTTTTAGATCTGCTGTGAA
TTTTCTGTGCTATTCTTAGGTTATGTAATTTTTCCAGAGAAAGTTAGTGAATCAGGTCAACTTA
TTTACTTGGAGAATGTATTCATCTGTTTTAACACAGAATTTAGTCTTGTTTCTTATATTTATGT
ATTTCCTAAACCTAATTCAGTAACACATGCTTTCTGTTTTATGATGTATCTGGCTTAGGTGTTC
TATATAACATGTTGTAAAATTTGGAAAAAGGACTTTTTTTCTTTTAAAAAAGTATATATACTGA
AAAAAACTGAATTTCTTTGTAAATTCCAAGTAAGAGAGCAGACCTCACATCTGAGGTTTTATTA
TTGGTATCTCCTTTGAGATAACAAGTAGAAGTATTTTTTTTCCCTCTTTTTCTAAACAAAACTA
AAGGAATAAGAAAAGAGGAACAGAGGGAAGAAGACATAATGTTGACTCAGGGTAGCACATTAAG
TGGAACAAAAGAAAAAACAGTCCTGGTAGGTATATGTAGTAACAATGGTTTCCAGACTGGTTGA
TTACCGGAATTCCCCGAAACCGTGATTCTTAGTCATGGCCACATTTTGGAATCACCTGGGAAAC
TTAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_014114798 ⟹ XP_013970273

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	47,016,048 - 47,044,156 (-)	NCBI
Dog10K_Boxer_Tasha	6	49,807,045 - 49,835,425 (-)	NCBI

Sequence:

show sequence

ATGGCGGCTCCCGAGCAGCCGCTACCGCCCATGTCCAGGGGATGCCAGAGCTCCGCCTCGCTCT
CTCCGCCGCGGGGCGACCGGACCCTTCTAGTGAGGCACCTGCCGGCCGAGCTGACCGCCGAGGA
GAAAGAGGACTTGCTTAAGTACTTCGGGGCTCAGTCGGTGCGCGTCCTGTCGGATAAGGGACGG
CTGAAACATACAGCTTTTGCTACTTTCCCTAATGAAAAGGCAGCTATAAAGGCATTGACAAGAC
TACATCAACTGAAACTTCTAGGTCATACTTTAGTTGTTGAATTTGCAAAAGAGCAAGATCGAGT
TCATTCCCCATGTCCCCCTTCAGACCCTGAAAAAAAGAAAAGATCTGATGACCCTGTGGAAGAT
GATAAAGAAAAGAAAGAACTTGGTTGTATAACCATAGAAAATGGAATTGCACCAAACCATGGGC
TGACTTTTCCTCTGAATTCATGCCTCAAGTATATGTACCCACCACCTTCAAGCACAATCCTAGC
AAACATAGTAAATGCTTTGGCAAGTGTGCCGAAGTTCTATGTACAGGTGCTTCATCTTATGAAT
AAAATGAATTTGCCCACACCATTTGGACCAATAACGGCACGACCTCCCATGTATGAAGACTATA
TGCCATTGCATGCACCTCTTCCACCTGCATCTCCTCAGCCACCAGAGGAACCACCTTTGCCAGA
TGAGGATGAGGAATTATCAAGTAAAGAATCAGAATATGAAAGCAGTGATGATGAAGACCGACAG
AGAATGACCAAACTAATGGAATTAGCAAATCTTCAGCCCAAAAGACCAAAAGCAATAAAGCAGC
ACCATGTGAGAAAAAAGCAAAAAATAAAGGATATGTTGAAAACACCTTCATCTGCTTCACATGG
CAGTTTACATCCAGTGCTGTTACCTTCGGATGTATTTGACCAACCACAGCCTGTAGGTAATAAG
AAAATTGAATTTCATATATCTACTGACATGACATCTGCATTTAAGAAAGATCTAGAAAAAGAAC
AAAATTGTGAAGAACAAAGTTATGATTTGCCTGCTCCTGAAGGTGATGCCCCCAATGTAGGATT
TGGAAAAATCTTCCCCAAACCTAATTTGAACATCACAGAAGAGATTAAAGAGGACTGTGATGAA
ATGCCATCAGAATGTATATCTAGAAGGGAGTTGGAAAAAGGCAGAATTTCTAGAGAAGAAATGG
AAACACTGTCAGTTTTCAGAAGTTATGAACCTGGTGAACCAAACTGTAGAGTTTATGTAAAGAA
TTTAGCTAAACATGTTCAAGAAAAGGACCTTAAATTTATTTTTGGGAGATATGTTGACTTTTCA
TCAGAAACACAACGGATAATGTTTGATATACGTTTGATGAAAGAAGGTCGCATGAAAGGACAAG
CTTTCATTGGACTTCCAAATGAAAAAGCAGCAGCAAAAGCCTTAAAGGAAGCTAATGGATATGT
TCTTTTTGGAAAACCTATGGTGGTTCAATTCGCTCGATCTGCTAGACCAAAACAAGATTCTAAA
GAAGGAAAAAGGAAGTGTTAAAAATTAGTAAAGGTTCCTTTTGATTCCGTGTCTTCCAACTGCT
TTCCAAATTTAAGGAGAAGAAAATGACACCTGGTCTATGGAACTGTGCGTAACAGCTTTTAAAG
TATATTTAAAAGTTAAAATCTATATGCATTAAATCAGTTTATTGGAGATATATTACATGTATTT
TAATCATCTTCCTCATATATAATAAATTATTTTCTTTCCAATAAAA

hide sequence

RefSeq Acc Id:

XM_022420408 ⟹ XP_022276116

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	47,016,048 - 47,044,272 (-)	NCBI
Dog10K_Boxer_Tasha	6	49,807,057 - 49,835,425 (-)	NCBI

Sequence:

show sequence

TTGTTTCCAGAATCCCTAGCGCGAGGCGGAAAAACACTCTTTTCCCTCAGCCTCTGTGGCCGGG
CGTGTTGTCGCTGCAAGCTCTTCTCGCGTCGCCGTCGCCGTCGCCGAGGGAAATGGCGGCTCCC
GAGCAGCCGCTACCGCCCATGTCCAGGGGATGCCAGAGCTCCGCCTCGCTCTCTCCGCCGCGGG
GCGACCGGACCCTTCTAGTGAGGCACCTGCCGGCCGAGCTGACCGCCGAGGAGAAAGAGGACTT
GCTTAAGTACTTCGGGGCTCAGTCGGTGCGCGTCCTGTCGGATAAGGGACGGCTGAAACATACA
GCTTTTGCTACTTTCCCTAATGAAAAGGCAGCTATAAAGGCATTGACAAGACTACATCAACTGA
AACTTCTAGGTCATACTTTAGTTGTTGAATTTGCAAAAGAGCAAGATCGAGTTCATTCCCCATG
TCCCCCTTCAGACCCTGAAAAAAAGAAAAGATCTGATGACCCTGTGGAAGATGATAAAGAAAAG
AAAGAACTTGGTTGTATAACCATAGAAAATGGAATTGCACCAAACCATGGGCTGACTTTTCCTC
TGAATTCATGCCTCAAGTATATGTACCCACCACCTTCAAGCACAATCCTAGCAAACATAGTAAA
TGCTTTGGCAAGTGTGCCGAAGTTCTATGTACAGGTGCTTCATCTTATGAATAAAATGAATTTG
CCCACACCATTTGGACCAATAACGGCACGACCTCCCATGTATGAAGACTATATGCCATTGCATG
CACCTCTTCCACCTGCATCTCCTCAGCCACCAGAGGAACCACCTTTGCCAGATGAGGATGAGGA
ATTATCAAGTAAAGAATCAGAATATGAAAGCAGTGATGATGAAGACCGACAGAGAATGACCAAA
CTAATGGAATTAGCAAATCTTCAGCCCAAAAGACCAAAAGCAATAAAGCAGCACCATGTGAGAA
AAAAGCAAAAAATAAAGGATATGTTGAAAACACCTTCATCTGCTTCACATGGCAGTTTACATCC
AGTGCTGTTACCTTCGGATGTATTTGACCAACCACAGCCTGTAGGTAATAAGAAAATTGAATTT
CATATATCTACTGACATGACATCTGCATTTAAGAAAGATCTAGAAAAAGAACAAAATTGTGAAG
AACAAAGTTATGATTTGCCTGCTCCTGAAGGTGATGCCCCCAATGTAGGATTTGGAAAAATCTT
CCCCAAACCTAATTTGAACATCACAGAAGAGATTAAAGAGGACTGTGATGAAATGCCATCAGAA
TGTATATCTAGAAGGGAGTTGGAAAAAGGCAGAATTTCTAGAGAAGAAATGGAAACACTGTCAG
TTTTCAGAAGTTATGAACCTGGTGAACCAAACTGTAGAGTTTATGTAAAGAATTTAGCTAAACA
TGTTCAAGAAAAGGACCTTAAATTTATTTTTGGGAGATATGTTGACTTTTCATCAGAAACACAA
CGGATAATGTTTGATATACGTTTGATGAAAGAAGGTCGCATGAAAGGACAAGCTTTCATTGGAC
TTCCAAATGAAAAAGCAGCAGCAAAAGCCTTAAAGGAAGCTAATGGATATGTTCTTTTTGGAAA
ACCTATGGTGGTTCAATTCGCTCGATCTGCTAGACCAAAACAAGATTCTAAAGAAGGAAAAAGG
AAGTGTTAAAAATTAGTAAAGAAGCATTCCTGCGTAAATACTGCTGTAATACTGTCATACAAAG
TGTATCCTTTCTTGTTGTATCCTTTTTGGGGCAGTGTTTTCTGTTTTTCCTAGAAATGTTTTGT
CCCCCATTGATTCAGATTAAGCAATATTTTTTTATAATTTATTCAGAAGATATATTTCTAAAAT
TATCAGTGTTGATTGGACAAATCATTTATCTCCTTTTTAGATCTGCTGTGAATTTTCTGTGCTA
TTCTTAGGTTATGTAATTTTTCCAGAGAAAGTTAGTGAATCAGGTCAACTTATTTACTTGGAGA
ATGTATTCATCTGTTTTAACACAGAATTTAGTCTTGTTTCTTATATTTATGTATTTCCTAAACC
TAATTCAGTAACACATGCTTTCTGTTTTATGATGTATCTGGCTTAGGTGTTCTATATAACATGT
TGTAAAATTTGGAAAAAGGACTTTTTTTCTTTTAAAAAAGTATATATACTGAAAAAAACTGAAT
TTCTTTGTAAATTCCAAGTAAGAGAGCAGACCTCACATCTGAGGTTTTATTATTGGTATCTCCT
TTGAGATAACAAGTAGAAGTATTTTTTTTCCCTCTTTTTCTAAACAAAACTAAAGGAATAAGAA
AAGAGGAACAGAGGGAAGAAGACATAATGTTGACTCAGGGTAGCACATTAAGTGGAACAAAAGA
AAAAACAGTCCTGGTTCCTTTTGATTCCGTGTCTTCCAACTGCTTTCCAAATTTAAGGAGAAGA
AAATGACACCTGGTCTATGGAACTGTGCGTAACAGCTTTTAAAGTATATTTAAAAGTTAAAATC
TATATGCATTAAATCAGTTTATTGGAGATATATTACATGTATTTTAATCATCTTCCTCATATAT
AATAAATTATTTTCTTTCCAATAAAA

hide sequence

RefSeq Acc Id:

XM_022420409 ⟹ XP_022276117

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	47,016,048 - 47,044,156 (-)	NCBI
Dog10K_Boxer_Tasha	6	49,807,057 - 49,835,425 (-)	NCBI

Sequence:

show sequence

ATGGCGGCTCCCGAGCAGCCGCTACCGCCCATGTCCAGGGGATGCCAGAGCTCCGCCTCGCTCT
CTCCGCCGCGGGGCGACCGGACCCTTCTAGTGAGGCACCTGCCGGCCGAGCTGACCGCCGAGGA
GAAAGAGGACTTGCTTAAGTACTTCGGGGCTCAGTCGGTGCGCGTCCTGTCGGATAAGGGACGG
CTGAAACATACAGCTTTTGCTACTTTCCCTAATGAAAAGGCAGCTATAAAGGCATTGACAAGAC
TACATCAACTGAAACTTCTAGGTCATACTTTAGTTGTTGAATTTGCAAAAGAGCAAGATCGAGT
TCATTCCCCATGTCCCCCTTCAGACCCTGAAAAAAAGAAAAGATCTGATGACCCTGTGGAAGAT
GATAAAGAAAAGAAAGAACTTGGTTGTATAACCATAGAAAATGGAATTGCACCAAACCATGGGC
TGACTTTTCCTCTGAATTCATGCCTCAAGTATATGTACCCACCACCTTCAAGCACAATCCTAGC
AAACATAGTAAATGCTTTGGCAAGTGTGCCGAAGTTCTATGTACAGGTGCTTCATCTTATGAAT
AAAATGAATTTGCCCACACCATTTGGACCAATAACGGCACGACCTCCCATGTATGAAGACTATA
TGCCATTGCATGCACCTCTTCCACCTGCATCTCCTCAGCCACCAGAGGAACCACCTTTGCCAGA
TGAGGATGAGGAATTATCAAGTAAAGAATCAGAATATGAAAGCAGTGATGATGAAGACCGACAG
AGAATGACCAAACTAATGGAATTAGCAAATCTTCAGCCCAAAAGACCAAAAGCAATAAAGCAGC
ACCATGTGAGAAAAAAGCAAAAAATAAAGGATATGTTGAAAACACCTTCATCTGCTTCACATGG
CAGTTTACATCCAGTGCTGTTACCTTCGGATGTATTTGACCAACCACAGCCTGTAGGTAATAAG
AAAATTGAATTTCATATATCTACTGACATGACATCTGCATTTAAGAAAGATCTAGAAAAAGAAC
AAAATTGTGAAGAACAAAGTTATGATTTGCCTGCTCCTGAAGGTGATGCCCCCAATGTAGGATT
TGGAAAAATCTTCCCCAAACCTAATTTGAACATCACAGAAGAGATTAAAGAGGACTGTGATGAA
ATGCCATCAGAATGTATATCTAGAAGGGAGTTGGAAAAAGGCAGAATTTCTAGAGAAGAAATGG
AAACACTGTCAGTTTTCAGAAGTTATGAACCTGGTGAACCAAACTGTAGAGTTTATGTAAAGAA
TTTAGCTAAACATGTTCAAGAAAAGGACCTTAAATTTATTTTTGGGAGATATGTTGACTTTTCA
TCAGAAACACAACGGATAATGTTTGATATACGTTTGATGAAAGAAGGTCGCATGAAAGGACAAG
CTTTCATTGGACTTCCAAATGAAAAAGCAGCAGCAAAAGCCTTAAAGGAAGCTAATGGATATGT
TCTTTTTGGAAAACCTATGGTGGTTCAATTCGCTCGATCTGCTAGACCAAAACAAGATTCTAAA
GAAGGAAAAAGGAAGTGTTAAAAATTAGTAAAGAAGCATTCCTGCGTAAATACTGCTGTAATAC
TGTCATACAAAGTGTATCCTTTCTTGTTGAATAAGAAAAGAGGAACAGAGGGAAGAAGACATAA
TGTTGACTCAGGGTAGCACATTAAGTGGAACAAAAGAAAAAACAGTCCTGGTTCCTTTTGATTC
CGTGTCTTCCAACTGCTTTCCAAATTTAAGGAGAAGAAAATGACACCTGGTCTATGGAACTGTG
CGTAACAGCTTTTAAAGTATATTTAAAAGTTAAAATCTATATGCATTAAATCAGTTTATTGGAG
ATATATTACATGTATTTTAATCATCTTCCTCATATATAATAAATTATTTTCTTTCCAATAAAA

hide sequence

RefSeq Acc Id:

XM_022420410 ⟹ XP_022276118

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	47,016,048 - 47,044,156 (-)	NCBI
Dog10K_Boxer_Tasha	6	49,807,045 - 49,835,425 (-)	NCBI

Sequence:

show sequence

ATGGCGGCTCCCGAGCAGCCGCTACCGCCCATGTCCAGGGGATGCCAGAGCTCCGCCTCGCTCT
CTCCGCCGCGGGGCGACCGGACCCTTCTAGTGAGGCACCTGCCGGCCGAGCTGACCGCCGAGGA
GAAAGAGGACTTGCTTAAGTACTTCGGGGCTCAGTCGGTGCGCGTCCTGTCGGATAAGGGACGG
CTGAAACATACAGCTTTTGCTACTTTCCCTAATGAAAAGGCAGCTATAAAGGCATTGACAAGAC
TACATCAACTGAAACTTCTAGGTCATACTTTAGTTGTTGAATTTGCAAAAGAGCAAGATCGAGT
TCATTCCCCATGTCCCCCTTCAGACCCTGAAAAAAAGAAAAGATCTGATGACCCTGTGGAAGAT
GATAAAGAAAAGAAAGAACTTGGTTGTATAACCATAGAAAATGGAATTGCACCAAACCATGGGC
TGACTTTTCCTCTGAATTCATGCCTCAAGTATATGTACCCACCACCTTCAAGCACAATCCTAGC
AAACATAGTAAATGCTTTGGCAAGTGTGCCGAAGTTCTATGTACAGGTGCTTCATCTTATGAAT
AAAATGAATTTGCCCACACCATTTGGACCAATAACGGCACGACCTCCCATGTATGAAGACTATA
TGCCATTGCATGCACCTCTTCCACCTGCATCTCCTCAGCCACCAGAGGAACCACCTTTGCCAGA
TGAGGATGAGGAATTATCAAGTAAAGAATCAGAATATGAAAGCAGTGATGATGAAGACCGACAG
AGAATGACCAAACTAATGGAATTAGCAAATCTTCAGCCCAAAAGACCAAAAGCAATAAAGCAGC
ACCATGTGAGAAAAAAGCAAAAAATAAAGGATATGTTGAAAACACCTTCATCTGCTTCACATGG
CAGTTTACATCCAGTGCTGTTACCTTCGGATGTATTTGACCAACCACAGCCTGTAGGTAATAAG
AAAATTGAATTTCATATATCTACTGACATGACATCTGCATTTAAGAAAGATCTAGAAAAAGAAC
AAAATTGTGAAGAACAAAGTTATGATTTGCCTGCTCCTGAAGGTGATGCCCCCAATGTAGGATT
TGGAAAAATCTTCCCCAAACCTAATTTGAACATCACAGAAGAGATTAAAGAGGACTGTGATGAA
ATGCCATCAGAATGTATATCTAGAAGGGAGTTGGAAAAAGGCAGAATTTCTAGAGAAGAAATGG
AAACACTGTCAGTTTTCAGAAGTTATGAACCTGGTGAACCAAACTGTAGAGTTTATGTAAAGAA
TTTAGCTAAACATGTTCAAGAAAAGGACCTTAAATTTATTTTTGGGAGATATGTTGACTTTTCA
TCAGAAACACAACGGATAATGTTTGATATACGTTTGATGAAAGAAGGTCGCATGAAAGGACAAG
CTTTCATTGGACTTCCAAATGAAAAAGCAGCAGCAAAAGCCTTAAAGGAAGCTAATGGATATGT
TCTTTTTGGAAAACCTATGGTGGTTCAATTCGCTCGATCTGCTAGACCAAAACAAGATTCTAAA
GAAGGAAAAAGGAAGTGTTAAAAATTAGTAAAGAAGCATTCCTGCGTAAATACTGCTGTAATAC
TGTCATACAAAGTGAATAAGAAAAGAGGAACAGAGGGAAGAAGACATAATGTTGACTCAGGGTA
GCACATTAAGTGGAACAAAAGAAAAAACAGTCCTGGTTCCTTTTGATTCCGTGTCTTCCAACTG
CTTTCCAAATTTAAGGAGAAGAAAATGACACCTGGTCTATGGAACTGTGCGTAACAGCTTTTAA
AGTATATTTAAAAGTTAAAATCTATATGCATTAAATCAGTTTATTGGAGATATATTACATGTAT
TTTAATCATCTTCCTCATATATAATAAATTATTTTCTTTCCAATAAAA

hide sequence

RefSeq Acc Id:

XM_038479892 ⟹ XP_038335820

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	47,042,584 - 47,070,088 (-)	NCBI

RefSeq Acc Id:

XM_038479894 ⟹ XP_038335822

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	47,041,712 - 47,070,202 (-)	NCBI

RefSeq Acc Id:

XM_038479895 ⟹ XP_038335823

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	47,041,712 - 47,070,088 (-)	NCBI

RefSeq Acc Id:

XM_038479896 ⟹ XP_038335824

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	47,041,712 - 47,070,204 (-)	NCBI

RefSeq Acc Id:

XM_038541174 ⟹ XP_038397102

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	47,387,818 - 47,482,249 (-)	NCBI

RefSeq Acc Id:

XM_038541175 ⟹ XP_038397103

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	47,453,752 - 47,482,135 (-)	NCBI

RefSeq Acc Id:

XM_038541176 ⟹ XP_038397104

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	47,453,764 - 47,482,135 (-)	NCBI

RefSeq Acc Id:

XM_038541177 ⟹ XP_038397105

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	47,454,624 - 47,482,135 (-)	NCBI

RefSeq Acc Id:

XM_038541178 ⟹ XP_038397106

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	47,453,752 - 47,482,135 (-)	NCBI

RefSeq Acc Id:

XM_038541179 ⟹ XP_038397107

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	47,453,764 - 47,482,135 (-)	NCBI

RefSeq Acc Id:

XM_038553351 ⟹ XP_038409279

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
Dog10K_Boxer_Tasha	6	49,741,149 - 49,835,539 (-)	NCBI

RefSeq Acc Id:

XM_038605325 ⟹ XP_038461253

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	46,950,056 - 47,044,434 (-)	NCBI

RefSeq Acc Id:

XM_038605326 ⟹ XP_038461254

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	47,015,954 - 47,044,320 (-)	NCBI

RefSeq Acc Id:

XM_038605327 ⟹ XP_038461255

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	47,015,966 - 47,044,320 (-)	NCBI

RefSeq Acc Id:

XM_038605328 ⟹ XP_038461256

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	47,016,826 - 47,044,320 (-)	NCBI

RefSeq Acc Id:

XM_038605329 ⟹ XP_038461257

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	47,015,954 - 47,044,320 (-)	NCBI

RefSeq Acc Id:

XM_038605330 ⟹ XP_038461258

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	47,015,966 - 47,044,320 (-)	NCBI

RefSeq Acc Id:

XM_038669974 ⟹ XP_038525902

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	47,287,659 - 47,382,209 (-)	NCBI

RefSeq Acc Id:

XM_038669975 ⟹ XP_038525903

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	47,353,649 - 47,382,095 (-)	NCBI

RefSeq Acc Id:

XM_038669976 ⟹ XP_038525904

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	47,353,661 - 47,382,095 (-)	NCBI

RefSeq Acc Id:

XM_038669977 ⟹ XP_038525905

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	47,354,511 - 47,382,095 (-)	NCBI

RefSeq Acc Id:

XM_038669978 ⟹ XP_038525906

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	47,353,649 - 47,382,095 (-)	NCBI

RefSeq Acc Id:

XM_038669979 ⟹ XP_038525907

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	47,353,661 - 47,382,095 (-)	NCBI

RefSeq Acc Id:

XR_005327223

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	47,041,724 - 47,070,088 (-)	NCBI

RefSeq Acc Id:

XR_005327224

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	47,041,712 - 47,070,088 (-)	NCBI

RefSeq Acc Id:

XR_005327225

Type:

NON-CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	47,041,724 - 47,070,088 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_013970272	(Get FASTA)	NCBI Sequence Viewer
	XP_013970273	(Get FASTA)	NCBI Sequence Viewer
	XP_022276116	(Get FASTA)	NCBI Sequence Viewer
	XP_022276117	(Get FASTA)	NCBI Sequence Viewer
	XP_022276118	(Get FASTA)	NCBI Sequence Viewer
	XP_038335820	(Get FASTA)	NCBI Sequence Viewer
	XP_038335822	(Get FASTA)	NCBI Sequence Viewer
	XP_038335823	(Get FASTA)	NCBI Sequence Viewer
	XP_038335824	(Get FASTA)	NCBI Sequence Viewer
	XP_038397102	(Get FASTA)	NCBI Sequence Viewer
	XP_038397103	(Get FASTA)	NCBI Sequence Viewer
	XP_038397104	(Get FASTA)	NCBI Sequence Viewer
	XP_038397105	(Get FASTA)	NCBI Sequence Viewer
	XP_038397106	(Get FASTA)	NCBI Sequence Viewer
	XP_038397107	(Get FASTA)	NCBI Sequence Viewer
	XP_038409279	(Get FASTA)	NCBI Sequence Viewer
	XP_038461253	(Get FASTA)	NCBI Sequence Viewer
	XP_038461254	(Get FASTA)	NCBI Sequence Viewer
	XP_038461255	(Get FASTA)	NCBI Sequence Viewer
	XP_038461256	(Get FASTA)	NCBI Sequence Viewer
	XP_038461257	(Get FASTA)	NCBI Sequence Viewer
	XP_038461258	(Get FASTA)	NCBI Sequence Viewer
	XP_038525902	(Get FASTA)	NCBI Sequence Viewer
	XP_038525903	(Get FASTA)	NCBI Sequence Viewer
	XP_038525904	(Get FASTA)	NCBI Sequence Viewer
	XP_038525905	(Get FASTA)	NCBI Sequence Viewer
	XP_038525906	(Get FASTA)	NCBI Sequence Viewer
	XP_038525907	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000029595.3
	ENSCAFP00030033177.1
	ENSCAFP00030033238.1
	ENSCAFP00040001114.1
	ENSCAFP00040001140.1
	ENSCAFP00040001162.1
	ENSCAFP00845014849
	ENSCAFP00845014849.1
	ENSCAFP00845014901.1

RefSeq Acc Id:	XP_013970273 ⟸ XM_014114798
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPEQPLPPMSRGCQSSASLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGR LKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPPSDPEKKKRSDDPVED DKEKKELGCITIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMN KMNLPTPFGPITARPPMYEDYMPLHAPLPPASPQPPEEPPLPDEDEELSSKESEYESSDDEDRQ RMTKLMELANLQPKRPKAIKQHHVRKKQKIKDMLKTPSSASHGSLHPVLLPSDVFDQPQPVGNK KIEFHISTDMTSAFKKDLEKEQNCEEQSYDLPAPEGDAPNVGFGKIFPKPNLNITEEIKEDCDE MPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRVYVKNLAKHVQEKDLKFIFGRYVDFS SETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDSK EGKRKC hide sequence

RefSeq Acc Id:	XP_013970272 ⟸ XM_014114797
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPEQPLPPMSRGCQSSASLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGR LKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPPSDPEKKKRSDDPVED DKEKKELGCITIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMN KMNLPTPFGPITARPPMYEDYMPLHAPLPPASPQPPEEPPLPDEDEELSSKESEYESSDDEDRQ RMTKLMELANLQPKRPKAIKQHHVRKKQKIKDMLKTPSSASHGSLHPVLLPSDVFDQPQPVGNK KIEFHISTDMTSAFKKDLEKEQNCEEQSYDLPAPEGDAPNVGFGKIFPKPNLNITEEIKEDCDE MPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRVYVKNLAKHVQEKDLKFIFGRYVDFS SETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDSK EGKRKC hide sequence

RefSeq Acc Id:	XP_022276116 ⟸ XM_022420408
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPEQPLPPMSRGCQSSASLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGR LKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPPSDPEKKKRSDDPVED DKEKKELGCITIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMN KMNLPTPFGPITARPPMYEDYMPLHAPLPPASPQPPEEPPLPDEDEELSSKESEYESSDDEDRQ RMTKLMELANLQPKRPKAIKQHHVRKKQKIKDMLKTPSSASHGSLHPVLLPSDVFDQPQPVGNK KIEFHISTDMTSAFKKDLEKEQNCEEQSYDLPAPEGDAPNVGFGKIFPKPNLNITEEIKEDCDE MPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRVYVKNLAKHVQEKDLKFIFGRYVDFS SETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDSK EGKRKC hide sequence

RefSeq Acc Id:	XP_022276118 ⟸ XM_022420410
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPEQPLPPMSRGCQSSASLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGR LKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPPSDPEKKKRSDDPVED DKEKKELGCITIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMN KMNLPTPFGPITARPPMYEDYMPLHAPLPPASPQPPEEPPLPDEDEELSSKESEYESSDDEDRQ RMTKLMELANLQPKRPKAIKQHHVRKKQKIKDMLKTPSSASHGSLHPVLLPSDVFDQPQPVGNK KIEFHISTDMTSAFKKDLEKEQNCEEQSYDLPAPEGDAPNVGFGKIFPKPNLNITEEIKEDCDE MPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRVYVKNLAKHVQEKDLKFIFGRYVDFS SETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDSK EGKRKC hide sequence

RefSeq Acc Id:	XP_022276117 ⟸ XM_022420409
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAPEQPLPPMSRGCQSSASLSPPRGDRTLLVRHLPAELTAEEKEDLLKYFGAQSVRVLSDKGR LKHTAFATFPNEKAAIKALTRLHQLKLLGHTLVVEFAKEQDRVHSPCPPSDPEKKKRSDDPVED DKEKKELGCITIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMN KMNLPTPFGPITARPPMYEDYMPLHAPLPPASPQPPEEPPLPDEDEELSSKESEYESSDDEDRQ RMTKLMELANLQPKRPKAIKQHHVRKKQKIKDMLKTPSSASHGSLHPVLLPSDVFDQPQPVGNK KIEFHISTDMTSAFKKDLEKEQNCEEQSYDLPAPEGDAPNVGFGKIFPKPNLNITEEIKEDCDE MPSECISRRELEKGRISREEMETLSVFRSYEPGEPNCRVYVKNLAKHVQEKDLKFIFGRYVDFS SETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPKQDSK EGKRKC hide sequence

Ensembl Acc Id:

ENSCAFP00000029595 ⟸ ENSCAFT00000031786

RefSeq Acc Id:	XP_038335824 ⟸ XM_038479896
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038335822 ⟸ XM_038479894
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038335823 ⟸ XM_038479895
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038335820 ⟸ XM_038479892
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038461253 ⟸ XM_038605325
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038461254 ⟸ XM_038605326
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038461257 ⟸ XM_038605329
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038461258 ⟸ XM_038605330
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038461255 ⟸ XM_038605327
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038461256 ⟸ XM_038605328
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038525902 ⟸ XM_038669974
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038525903 ⟸ XM_038669975
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038525906 ⟸ XM_038669978
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038525907 ⟸ XM_038669979
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038525904 ⟸ XM_038669976
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038525905 ⟸ XM_038669977
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038409279 ⟸ XM_038553351
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038397102 ⟸ XM_038541174
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038397103 ⟸ XM_038541175
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038397106 ⟸ XM_038541178
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038397107 ⟸ XM_038541179
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038397104 ⟸ XM_038541176
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038397105 ⟸ XM_038541177
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0NW40 (UniProtKB/TrEMBL), A0A8C0RUR9 (UniProtKB/TrEMBL), A0A8I3NBS0 (UniProtKB/TrEMBL), A0A8I3NH24 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845014901 ⟸ ENSCAFT00845019075

Ensembl Acc Id:

ENSCAFP00845014849 ⟸ ENSCAFT00845019007

Protein Domains

RRM

Promoters

RGD ID:

13683800

Promoter ID:

EPDNEW_C1868

Type:

initiation region

Name:

RNPC3_1

Description:

RNA binding region (RNP1, RRM) containing 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	47,044,237 - 47,044,297	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000019972	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030020710	UniProtKB/TrEMBL
	ENSCAFG00040000704	UniProtKB/TrEMBL
	ENSCAFG00845010771	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000031786.5	UniProtKB/TrEMBL
	ENSCAFT00030038025.1	UniProtKB/TrEMBL
	ENSCAFT00030038101.1	UniProtKB/TrEMBL
	ENSCAFT00040001298.1	UniProtKB/TrEMBL
	ENSCAFT00040001328.1	UniProtKB/TrEMBL
	ENSCAFT00040001357.1	UniProtKB/TrEMBL
	ENSCAFT00845019007	ENTREZGENE
	ENSCAFT00845019007.1	UniProtKB/TrEMBL
	ENSCAFT00845019075.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.70.330	UniProtKB/TrEMBL
	6.10.250.610	UniProtKB/TrEMBL
InterPro	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RBM40_RRM1	UniProtKB/TrEMBL
	RBM41/RNPC3	UniProtKB/TrEMBL
	RRM_dom	UniProtKB/TrEMBL
KEGG Report	cfa:490136	UniProtKB/TrEMBL
NCBI Gene	RNPC3	ENTREZGENE
PANTHER	PTHR16105	UniProtKB/TrEMBL
	RNA-BINDING REGION-CONTAINING PROTEIN 3	UniProtKB/TrEMBL
Pfam	RRM_1	UniProtKB/TrEMBL
PROSITE	RRM	UniProtKB/TrEMBL
SMART	RRM	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8C0NW40	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0PTF5_CANLF	UniProtKB/TrEMBL
	A0A8C0RUR9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NBS0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NH24	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

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