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Gene: HRCT1 (histidine rich carboxyl terminus 1) Canis lupus familiaris

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Symbol:

HRCT1

Name:

histidine rich carboxyl terminus 1

RGD ID:

12146632

Description:

ASSOCIATED WITH acromesomelic dysplasia, Maroteaux type (ortholog); anauxetic dysplasia (ortholog); autosomal recessive distal hereditary motor neuronopathy 2 (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

histidine-rich carboxyl terminus protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	52,420,070 - 52,421,097 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	52,420,011 - 52,420,629 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	50,987,026 - 50,988,660 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	53,484,458 - 53,486,092 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	11	52,028,923 - 52,030,556 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	52,013,365 - 52,014,999 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	52,714,651 - 52,716,285 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acromesomelic dysplasia, Maroteaux type (ISO)

anauxetic dysplasia (ISO)

autosomal recessive distal hereditary motor neuronopathy 2 (ISO)

distal arthrogryposis type 1A (ISO)

frontotemporal dementia and/or amyotrophic lateral sclerosis 6 (ISO)

galactosemia (ISO)

hyperphosphatasia with impaired intellectual development syndrome 2 (ISO)

paraplegia (ISO)

primary ciliary dyskinesia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

References

Genomics

Comparative Map Data

HRCT1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	11	52,420,070 - 52,421,097 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	11	52,420,011 - 52,420,629 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	11	50,987,026 - 50,988,660 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	11	53,484,458 - 53,486,092 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	11	52,028,923 - 52,030,556 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	11	52,013,365 - 52,014,999 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	11	52,714,651 - 52,716,285 (+)	NCBI		UU_Cfam_GSD_1.0

HRCT1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	35,906,202 - 35,907,136 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	35,906,202 - 35,907,136 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	35,906,199 - 35,907,133 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	35,896,189 - 35,897,138 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	9	35,839,732 - 35,840,681 (+)	NCBI		Celera
Cytogenetic Map	9	p13.3	NCBI
HuRef	9	35,862,398 - 35,863,282 (+)	NCBI		HuRef
CHM1_1	9	35,906,593 - 35,907,557 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	35,926,904 - 35,927,838 (+)	NCBI		T2T-CHM13v2.0

Hrct1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	43,727,198 - 43,728,110 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	43,727,188 - 43,728,639 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	43,727,198 - 43,728,110 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	43,727,188 - 43,728,639 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	43,740,070 - 43,740,982 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	43,740,070 - 43,741,511 (-)	NCBI		MGSCv36	mm8
Celera	4	43,761,603 - 43,762,515 (+)	NCBI		Celera
Cytogenetic Map	4	A5	NCBI
cM Map	4	23.05	NCBI

Hrct1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	62,778,112 - 62,778,954 (+)	NCBI		GRCr8
mRatBN7.2	5	57,982,344 - 57,983,186 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	57,982,470 - 57,982,790 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	59,962,712 - 59,963,554 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	61,781,524 - 61,782,366 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	61,752,461 - 61,753,303 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	59,228,138 - 59,228,915 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	59,228,199 - 59,228,519 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	63,752,928 - 63,753,705 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	60,212,808 - 60,213,544 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	56,562,874 - 56,563,651 (+)	NCBI		Celera
Cytogenetic Map	5	q22	NCBI

Hrct1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	167,364,797 - 167,365,642 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936524	3,912,416 - 3,912,796 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936524	3,912,344 - 3,913,231 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

HRCT1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	236,670,604 - 236,670,948 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	236,670,418 - 236,671,435 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

HRCT1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	44,693,433 - 44,694,718 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	44,693,998 - 44,694,303 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	41,798,444 - 41,800,702 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Hrct1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624868	4,863,984 - 4,866,450 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in HRCT1
8 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005626802	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038490676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038552804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038616665	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038682131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000045780 ⟹ ENSCAFP00000040953

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	11	52,420,011 - 52,420,629 (+)	Ensembl

RefSeq Acc Id:

XM_005626802 ⟹ XP_005626859

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	11	52,420,070 - 52,421,097 (+)	NCBI
Dog10K_Boxer_Tasha	11	50,987,026 - 50,988,660 (+)	NCBI

Sequence:

show sequence

CCCCGTGGACCTCCCCAGAGTTAACAGTCGCCTGGCCTCGCGCTTGGCAGGCAGCTCCAGCCCA
GAGAGGCTGCGCCCACATTCCCTGGCTGCTCTCCAGCCCGCGGGAGCTGAGACAAGGTCCAGGG
ACTGCGAGGCCGGGCAGAGGCTGCGGAGGGGAGGAAGCAGCACGGAGCCGCCGAGTGGAAGGAC
CGTCCAGCTCCCAGATGCTAGGCCTCGTGGGCTTGGTCATAGGCGCCGCTGTGGCCGTGCTGCT
GCTGCTGCTGCTGGCCGCCTGCCTGTGCCGCGGACGGCAGGACCCCGACGTGGAGAGGAACCCA
CCGGCTGCAAGGAGGAACCGAGTCCGGTGGGCCCAGCCTTGGCTCTTCCCGCGCCGGGGCCAGC
TGGGACACTTTCACTACTTCCACCATCCTGGCCACGTGTCTGGCATGCGCCATGCGGGCCTCCA
CCACCAACACCTCCACCACCTCCACCACCACCAAGCCCACCATCAAGGCCACCTCCACCACCAC
CATGCCCACCACCTCGCCCACCTCCACGTCCACCGAGGCCACCGCTGACACCTGGGAATGGCAG
CCACCGCCTGTCCTACCATCACCAGGATGTGGACCCCCATGCTCCCATGCAGAGGGGCGCCTCT
CTGTGGTAAACGCCGGGGACTGTGCCCTGGTCCTGCTTGGCTTCTGCGGACCACGCCCCAGGGT
ACCACGAGGAGAGAACTGAGGGGATTCGGGGGGGTGCCCTGTGCACACTGGAGGGTCACGGGGT
GAGAGTGGGGGTGGTCCTTCGGGGACGGACACTGCCTTGGGCCTGTAACGCCCAGGGGACCCCG
GTGCACGTCGATGCACAGAAGATGGGCTGTGCTCTCTGAAGTGCTGTCTCCTGACTGACGCAGG
CCCCTGGCCAGGGGGCTACCTAGAAGGGGCCAGCAGTGCCCTCGAATTTGGAGAAGGCAGTATG
AGGCTGCAGGGTCAGTTCACCTGTGCCTTGATGCAAGAAAATAAAAACCACTAAGAAGCTTTTG
TGAA

hide sequence

RefSeq Acc Id:

XM_038490676 ⟹ XP_038346604

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	11	52,028,923 - 52,030,556 (+)	NCBI

RefSeq Acc Id:

XM_038552804 ⟹ XP_038408732

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	11	52,714,651 - 52,716,285 (+)	NCBI

RefSeq Acc Id:

XM_038616665 ⟹ XP_038472593

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	11	52,013,365 - 52,014,999 (+)	NCBI

RefSeq Acc Id:

XM_038682131 ⟹ XP_038538059

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	11	53,484,458 - 53,486,092 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005626859	(Get FASTA)	NCBI Sequence Viewer
	XP_038346604	(Get FASTA)	NCBI Sequence Viewer
	XP_038408732	(Get FASTA)	NCBI Sequence Viewer
	XP_038472593	(Get FASTA)	NCBI Sequence Viewer
	XP_038538059	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000040953.2

RefSeq Acc Id:	XP_005626859 ⟸ XM_005626802
- Sequence:	show sequence MLGLVGLVIGAAVAVLLLLLLAACLCRGRQDPDVERNPPAARRNRVRWAQPWLFPRRGQLGHFH YFHHPGHVSGMRHAGLHHQHLHHLHHHQAHHQGHLHHHHAHHLAHLHVHRGHR hide sequence

Ensembl Acc Id:

ENSCAFP00000040953 ⟸ ENSCAFT00000045780

RefSeq Acc Id:

XP_038346604 ⟸ XM_038490676

RefSeq Acc Id:

XP_038472593 ⟸ XM_038616665

RefSeq Acc Id:

XP_038538059 ⟸ XM_038682131

RefSeq Acc Id:

XP_038408732 ⟸ XM_038552804

Promoters

RGD ID:

13685256

Promoter ID:

EPDNEW_C3322

Type:

multiple initiation site

Name:

HRCT1_1

Description:

histidine rich carboxyl terminus 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	11	52,420,213 - 52,420,273	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000029080	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000045780.3	UniProtKB/TrEMBL
InterPro	HRCT1	UniProtKB/TrEMBL
NCBI Gene	HRCT1	ENTREZGENE
PANTHER	HISTIDINE-RICH CARBOXYL TERMINUS PROTEIN 1	UniProtKB/TrEMBL
	PTHR23009	UniProtKB/TrEMBL
Pfam	HRCT1	UniProtKB/TrEMBL
UniProt	A0A8P0NRZ7_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:41784	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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