Hrct1 (histidine rich carboxyl terminus 1) - Rat Genome Database

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Gene: Hrct1 (histidine rich carboxyl terminus 1) Mus musculus
Analyze
Symbol: Hrct1
Name: histidine rich carboxyl terminus 1
RGD ID: 1611882
MGI Page MGI
Description: Predicted to be located in membrane. Orthologous to human HRCT1 (histidine rich carboxyl terminus 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3830408D24Rik; histidine-rich carboxyl terminus protein 1
RGD Orthologs
Human
Rat
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,727,198 - 43,728,110 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl443,727,188 - 43,728,639 (+)EnsemblGRCm39 Ensembl
GRCm38443,727,198 - 43,728,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl443,727,188 - 43,728,639 (+)EnsemblGRCm38mm10GRCm38
MGSCv37443,740,070 - 43,740,982 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36443,740,070 - 43,741,511 (-)NCBIMGSCv36mm8
Celera443,761,603 - 43,762,515 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map423.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12040188   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073  
PMID:20562862   PMID:22967998  


Genomics

Comparative Map Data
Hrct1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39443,727,198 - 43,728,110 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl443,727,188 - 43,728,639 (+)EnsemblGRCm39 Ensembl
GRCm38443,727,198 - 43,728,110 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl443,727,188 - 43,728,639 (+)EnsemblGRCm38mm10GRCm38
MGSCv37443,740,070 - 43,740,982 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36443,740,070 - 43,741,511 (-)NCBIMGSCv36mm8
Celera443,761,603 - 43,762,515 (+)NCBICelera
Cytogenetic Map4A5NCBI
cM Map423.05NCBI
HRCT1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38935,906,202 - 35,907,136 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl935,906,202 - 35,907,136 (+)EnsemblGRCh38hg38GRCh38
GRCh37935,906,199 - 35,907,133 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36935,896,189 - 35,897,138 (+)NCBINCBI36Build 36hg18NCBI36
Celera935,839,732 - 35,840,681 (+)NCBICelera
Cytogenetic Map9p13.3NCBI
HuRef935,862,398 - 35,863,282 (+)NCBIHuRef
CHM1_1935,906,593 - 35,907,557 (+)NCBICHM1_1
T2T-CHM13v2.0935,926,904 - 35,927,838 (+)NCBIT2T-CHM13v2.0
Hrct1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8562,778,112 - 62,778,954 (+)NCBIGRCr8
mRatBN7.2557,982,344 - 57,983,186 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl557,982,470 - 57,982,790 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx559,962,712 - 59,963,554 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0561,781,524 - 61,782,366 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0561,752,461 - 61,753,303 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0559,228,138 - 59,228,915 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl559,228,199 - 59,228,519 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0563,752,928 - 63,753,705 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4560,212,808 - 60,213,544 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera556,562,874 - 56,563,651 (+)NCBICelera
Cytogenetic Map5q22NCBI
HRCT1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11152,420,070 - 52,421,097 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1152,420,011 - 52,420,629 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1150,987,026 - 50,988,660 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01153,484,458 - 53,486,092 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11152,028,923 - 52,030,556 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01152,013,365 - 52,014,999 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01152,714,651 - 52,716,285 (+)NCBIUU_Cfam_GSD_1.0
Hrct1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947167,364,797 - 167,365,642 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365243,912,416 - 3,912,796 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365243,912,344 - 3,913,231 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HRCT1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1236,670,604 - 236,670,948 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11236,670,418 - 236,671,435 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
HRCT1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11244,693,433 - 44,694,718 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1244,693,998 - 44,694,303 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603841,798,444 - 41,800,702 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hrct1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248684,863,984 - 4,866,450 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hrct1
20 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:348
Count of miRNA genes:270
Interacting mature miRNAs:299
Transcripts:ENSMUST00000095109
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
10401905Sicd3_mseizure-induced cell death 3 (mouse)Not determined4939552543760862Mouse
10401115Pgia35_mproteoglycan induced arthritis 35 (mouse)Not determined41256237746562509Mouse
12880405Jcdq1_mjoint cartilage degeneration QTL 1 (mouse)41256237746562509Mouse
4142318Lyr2_mlymphoma resistance 2 (mouse)Not determined1401045763283678Mouse
4142047Mvwf3_mmodifier of von Willebrand factor 3 (mouse)Not determined14010457117072206Mouse
1301203Alcp8_malcohol preference locus 8 (mouse)Not determined41739516051395290Mouse
1301237Alcp7_malcohol preference locus 7 (mouse)Not determined41739516051395290Mouse
4141555Nbwa2_mNZB and NZW autoimmunity 2 (mouse)Not determined41789251551892635Mouse
4141911W6q15_mweight 6 weeks QTL 15 (mouse)Not determined1789261688982216Mouse
39128211Lwq22_mliver weight QTL 22 (mouse)41789261688982216Mouse
1357453Kidq4_mkidney weight QTL 4 (mouse)Not determined41789261688982216Mouse
25440481Moaq1_mmodifier of alien QTL 1 (mouse)41950000046000000Mouse
1302058Hrtfm3_mheart failure modifier 3 (mouse)Not determined42211194456112145Mouse
1300769Pcyts2_mplasmacytoma susceptibility 2 (mouse)Not determined42211194456112145Mouse
1301437Scon1_msucrose consumption 1 (mouse)Not determined42237344856373612Mouse
1302075Bdln6_mbody length 6 (mouse)Not determined42237344856373612Mouse
1301697Sluc18_msusceptibility to lung cancer 18 (mouse)Not determined42237344856373612Mouse
1302184Aaom1_mautoimmune aoritis in MRL mice 1 (mouse)Not determined42432229946332776Mouse
1300574Im2_mimmunoregulatory 2 (mouse)Not determined42807768262077816Mouse
1301586Stheal3_msoft tissue heal 3 (mouse)Not determined42865844262658566Mouse
1357877Synch1_msynechia 1 (mouse)Not determined42870992562710107Mouse
1301990Arvm1_mautoimmune renal vasculitis 1 (mouse)Not determined42933264663332776Mouse
4142290Ssrq9_mstress response QTL 9 (mouse)Not determined3439516046332776Mouse
1301792Hdlq10_mHDL QTL 10 (mouse)Not determined43585970769859853Mouse
1300977Mopkd1_mmodifier of polycystic kidney disease progression 1 (mouse)Not determined43655083970550967Mouse
26884449Sklq2_mskull length QTL 2, 5 week (mouse)436700000128993793Mouse
1302116Bbaa1_mB.burgdorferi-associated arthritis 1 (mouse)Not determined43825093072251078Mouse
10412178Habiir2_mhyperoxic acute lung injury imprinted region 2 (mouse)Not determined43945212663283678Mouse
1301786Bpq3_mblood pressure QTL 3 (mouse)Not determined44240224076402381Mouse
27226724Tibw2_mtibia width 2, proximal, 10 week (mouse)443000000108357197Mouse

Markers in Region
UniSTS:234908  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38443,727,606 - 43,728,068UniSTSGRCm38
MGSCv37443,740,478 - 43,740,940UniSTSGRCm37
Celera443,762,011 - 43,762,473UniSTS
Cytogenetic Map4B1UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000095109   ⟹   ENSMUSP00000092727
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl443,727,188 - 43,728,639 (+)Ensembl
GRCm38.p6 Ensembl443,727,188 - 43,728,639 (+)Ensembl
RefSeq Acc Id: NM_027511   ⟹   NP_081787
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39443,727,198 - 43,728,110 (+)NCBI
GRCm38443,727,198 - 43,728,110 (+)ENTREZGENE
MGSCv37443,740,070 - 43,740,982 (+)RGD
Celera443,761,603 - 43,762,515 (+)RGD
cM Map4 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_081787 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB29342 (Get FASTA)   NCBI Sequence Viewer  
  EDL02446 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000092727
  ENSMUSP00000092727.4
GenBank Protein Q9D6B9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_081787   ⟸   NM_027511
- UniProtKB: A2ANK5 (UniProtKB/Swiss-Prot),   Q9D6B9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000092727   ⟸   ENSMUST00000095109

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D6B9-F1-model_v2 AlphaFold Q9D6B9 1-109 view protein structure

Promoters
RGD ID:6883256
Promoter ID:EPDNEW_M5079
Type:initiation region
Name:Hrct1_1
Description:Mus musculus histidine rich carboxyl terminus 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38443,727,198 - 43,727,258EPDNEW
RGD ID:6835479
Promoter ID:MM_KWN:37387
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:NM_027511
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36443,739,831 - 43,741,442 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917945 AgrOrtholog
Ensembl Genes ENSMUSG00000071001 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000095109 ENTREZGENE
  ENSMUST00000095109.5 UniProtKB/Swiss-Prot
InterPro HRCT1 UniProtKB/Swiss-Prot
KEGG Report mmu:100039781 UniProtKB/Swiss-Prot
MGD MGI:1917945 ENTREZGENE
NCBI Gene 100039781 ENTREZGENE
PANTHER HISTIDINE-RICH CARBOXYL TERMINUS PROTEIN 1 UniProtKB/Swiss-Prot
  PTHR23009 UniProtKB/Swiss-Prot
Pfam HRCT1 UniProtKB/Swiss-Prot
PhenoGen Hrct1 PhenoGen
UniProt A2ANK5 ENTREZGENE
  HRCT1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A2ANK5 UniProtKB/Swiss-Prot