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Gene: VSIG1 (V-set and immunoglobulin domain containing 1) Canis lupus familiaris

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Symbol:

VSIG1

Name:

V-set and immunoglobulin domain containing 1

RGD ID:

12143313

Description:

INVOLVED IN epithelial cell morphogenesis (ortholog); maintenance of gastrointestinal epithelium (ortholog); ASSOCIATED WITH autistic disorder (ortholog); autosomal hemophilia A (ortholog); Charcot-Marie-Tooth disease type X (ortholog); FOUND IN basolateral plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

V-set and immunoglobulin domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	81,574,202 - 81,618,242 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	81,574,025 - 81,616,879 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	67,694,985 - 67,739,070 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	83,223,396 - 83,267,781 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	83,223,363 - 83,266,418 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	80,682,761 - 80,726,838 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	82,395,332 - 82,439,388 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	82,187,480 - 82,231,918 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

autosomal hemophilia A (ISO)

Charcot-Marie-Tooth disease type X (ISO)

factor VIII deficiency (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

epithelial cell morphogenesis (IEA,ISO)

maintenance of gastrointestinal epithelium (IBA,IEA,ISO)

Cellular Component

basolateral plasma membrane (IBA,ISO)

membrane (IEA)

plasma membrane (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

VSIG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	81,574,202 - 81,618,242 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	81,574,025 - 81,616,879 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	67,694,985 - 67,739,070 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	83,223,396 - 83,267,781 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	83,223,363 - 83,266,418 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	80,682,761 - 80,726,838 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	82,395,332 - 82,439,388 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	82,187,480 - 82,231,918 (+)	NCBI		UU_Cfam_GSD_1.0

VSIG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	108,018,879 - 108,079,184 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	108,044,970 - 108,079,184 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	107,288,295 - 107,322,414 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	107,174,856 - 107,209,070 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	X	107,094,344 - 107,128,558	NCBI
Celera	X	107,759,672 - 107,793,886 (+)	NCBI		Celera
Cytogenetic Map	X	q22.3	NCBI
HuRef	X	96,911,024 - 96,945,061 (+)	NCBI		HuRef
CHM1_1	X	107,199,027 - 107,233,291 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	106,456,465 - 106,516,780 (+)	NCBI		T2T-CHM13v2.0

Vsig1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	139,808,357 - 139,840,221 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	139,808,357 - 139,840,221 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	140,907,608 - 140,939,472 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	140,907,608 - 140,939,472 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	137,442,147 - 137,474,011 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	136,253,984 - 136,285,322 (+)	NCBI		MGSCv36	mm8
Celera	X	124,163,008 - 124,194,683 (+)	NCBI		Celera
Cytogenetic Map	X	F1	NCBI
cM Map	X	61.62	NCBI

Vsig1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	109,395,406 - 109,428,612 (+)	NCBI		GRCr8
mRatBN7.2	X	104,607,031 - 104,640,128 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	104,607,031 - 104,639,249 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	106,736,345 - 106,768,561 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	110,235,703 - 110,267,919 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	107,789,739 - 107,821,925 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	112,268,786 - 112,303,849 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	112,270,986 - 112,303,846 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	52,297,900 - 52,330,568 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	128,750,376 - 128,782,154 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	43,302,084 - 43,334,283 (-)	NCBI		Celera
Cytogenetic Map	X	q33	NCBI

Vsig1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955490	7,837,397 - 7,871,588 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955490	7,837,846 - 7,871,540 (-)	NCBI	ChiLan1.0	ChiLan1.0

VSIG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	107,526,291 - 107,560,308 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	107,529,895 - 107,563,826 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	97,030,289 - 97,177,080 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	107,513,181 - 107,547,170 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	107,513,181 - 107,547,170 (+)	Ensembl	panpan1.1		panPan2

Vsig1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	80,919,499 - 80,950,165 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936499	6,708,049 - 6,738,306 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936499	6,708,049 - 6,738,358 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VSIG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	88,500,715 - 88,534,961 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	88,468,498 - 88,534,958 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

VSIG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	95,871,312 - 95,926,718 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	95,904,516 - 95,924,884 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666065	20,963,711 - 21,025,092 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vsig1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624803	8,422,036 - 8,457,102 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624803	8,421,863 - 8,457,044 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in VSIG1
541 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
3	3	3	21	14	7	2	6	2	4	23	18	12	14	5

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005641654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014111360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038450611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038450612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038524064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038524065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038588041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038588042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038652557	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038652558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000146	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000394	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000039	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000028591 ⟹ ENSCAFP00000026592

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	X	81,574,025 - 81,616,879 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000085870 ⟹ ENSCAFP00000065325

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	X	81,574,025 - 81,616,879 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845033020 ⟹ ENSCAFP00845025841

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	X	83,223,363 - 83,266,418 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845033074 ⟹ ENSCAFP00845025887

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	X	83,223,363 - 83,266,418 (+)	Ensembl

RefSeq Acc Id:

XM_005641654 ⟹ XP_005641711

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	X	81,574,206 - 81,618,242 (+)	NCBI
Dog10K_Boxer_Tasha	X	67,694,988 - 67,739,070 (+)	NCBI

Sequence:

show sequence

CAAATCCGCTCAGAGAAAGGACTGTACCCAATAAGCCTGAAAAGGCTATTTGCTTCGTGATGCC
GGCAGATAAGCCTGGCAAACCTCAGTGTGATTGAAGAAGCCAGTTGGAGACTCAGCCTAGCTCA
GGCAAGCTACCGGTCCTCGGCTACGCTCGACAAACCCTGACACAATGGTGTTCGCGTTTTGGAA
GGTCTTTCTGATCCTAAGCTGCCTTGCAGGTCAAGTTAGTATGGTGCAGGTGACCATCCCAAAC
AGCATTGTGAACGTGACTATTGGATCTGATGTCACACTTGTCTGCACCTACACCAGCACTGTGG
CCTCCCGAGACAAGCTCTCCATCCAGTGGTCATTCTTTCACAAGAAGGACTTACCACCAACTTC
CATTTACTATTCCGAAGGTGGACAAGCTGTAGCCATCGGGCAATTTAAAGATCGAATTGTAGGG
TCCAGCAGTCCAGATAATGCATCTATCACCATTTCACATATGCAACCAGCAGATAGTGGTGTCT
ACATCTGCGATGTTAACAACCCTCCTGATTTTGTTGGAAAAAATCAAGGCATCCTCAAAGTCAA
TGTGTTAGTGAAACCTTCTAAGCCCTTTTGCAGCATCCAAGGAGTACCAGAAACTGGCCATCCT
ATATCTCTTTCTTGCCTCTCGCTGCTTGGGACACCTTCCCCTGTATACTACTGGTATAAACTTG
AAGGCGGAGACATCATCCCAGTGAAAGAAAACTTCAACCCAGCCACTGGGACTTTGGTTATTGG
AAATCTGACCAGTTTTGAACAAGGTTATTACCAGTGCACAGCTATCAACAACCTTGGCAATAGT
TCCTGTGAAATTGATCTGACTTCTTCTCATCCAGAAGTTGGAATCATCGTTGGGGCGCTGGTGG
GGACCCTCGTAGGTGCTGCCATCATCGTCTCTGTCATGTGCTTTGCAAGGAAAAAAGCAAAGGC
AAAGGGGAAAGAAAGGAAGCGAAATTCAAAGACCACCACAGAACTCGAACCAATGACAAAGGTA
AACCAAAGTACAGAGTTTGAGGCAATGCCAGATGAACACGTGATCCAGCTAGAAGCTACCTTGC
CACCTTCTGGCCATGAGGATGACCCCGATGCCATCCTAGGGCCAGATCATCAGCCTATCCCGGA
GCCAGAGGCTGTCCAGGAGCCTGCCCCGCAGCCTGTCCCAGGGCTGGAGCTTGAGATAAAGCTG
GAGCCAGAGCTGAAGCCAGACCCAGATCCGGAGCCGGAGCTGGAGCCTGAGTCTGAGTCTGAGC
CTGGGATTATAGTGGAGCCCTTGTGTGAGAAGGATAGGGAGTGAGTAAGCCATAGGCTGTAGCC
TAAGTACAGTGTTCATCGCTAAGGAACTTATTACTGGTATTTGGAATTCAGCTGCCCTAACTAG
TCTCCCACCCCCTTCCTCTGTTCTGACTAACCCTTTTCTAACAAGGCGCCCCTACCATCAATCC
CAAACAAATAGGTCAAGATAAATACAAGGGTTCCTGCATGACTTACACTTTTACTAACATGTAA
GCCTAACCGATGACAAAGTGAGTGATTTCTCGTTCAGATGAAAGTGTTTTGTTTTGCAGCAACA
TCTACACTGTACTTCAGAAAATCTCTATTTTCAGCTCATCTTTATTATGTTCCACATGCACACA
TGACAAGGTGGCATTAATTGGATTCGATATTATTCCTAGGATGAGCTGTCAGGGCTTCCCTATT
CATTTTGACACTGGCCATGAAGACAAGAATTTGCTAGCATTCTCTTGTAGATTGGGGGCAGGGG
GAATCCTCAAAAATTGCAGAGGAGAATATGTAAAGGGTACATATTAATTGGTAGATAGCATTTA
AATCTAGGTCTTAAAATCAGTGCTTCATTTATCATATTAGATCTCCCAAGGAACCACTCTGCTA
TACAGTATCTTAAGCATAGCAAAAAATTTAAATAACCTAGTTTTCAAATGCAAGATAATCTACA
GGCAAACAGTTCCAGATAACATTTTCCTTCGGTGACTAAAAAATGTTGATACCATAGGTGATGT
ACAATTTACCTTTTAATGAGATACTATGTTATCACTATATCTGATGCTACCTTACTTAAGAAGG
GCCAGAATATGAAACTGTTCTAAGTGAATACTTAAGATCTATTTTAGATAATCTGAACAAATTA
TTTAATCTGTTTCACTGTTGGGATATTCCACAGTAGTAGATAACCATATAAGTACTAAATATTA
ACCTAACATGCATTGATATTACCTCTTTTTTACCTGCCAAAATGTGTTCTCCATTGATATTTTA
CCCATATACCACCTTGAAGAAATTTAAAGGTAGATTTTTTCATTTGTGTAATCAGATTTTAAAT
CTTATTTTGAAGTTCCATAAATAACACTCAATAAAATCTCATTTTAATGATCCTAAGGTAAATC
TTTCATTAATGTTATTGACATATACTTTATGTACAATAAAGCATACCCATTTCAGGTGTACCAT
TTGATGAGTTTTGACAGATGTATACACCCATGAAACCACCACAATTTAAAGAGAGCATTTCTGT
CAATCCAAAGTGTTTCCTATGCCTTCGTGTAATCCCACCATCACCTTGGACCTAGGCAACCACT
GATTTGCTTTCCATCTTTAGAGATTAGCTTTGCCTTTTCTTGACCTTTGTATAAATGTGATCAT
ATAGTCTGGA

hide sequence

RefSeq Acc Id:

XM_014111360 ⟹ XP_013966835

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	X	81,574,202 - 81,618,242 (+)	NCBI
Dog10K_Boxer_Tasha	X	67,694,985 - 67,739,070 (+)	NCBI

Sequence:

show sequence

AACACAAATCCGCTCAGAGAAAGGACTGTACCCAATAAGCCTGAAAAGGCTATTTGCTTCGTGA
TGCCGGCAGATAAGCCTGGCAAACCTCAGTGTGATTGAAGAAGCCAGTTGGAGACTCAGCCTAG
CTCAGGCAAGCTACCGGTCCTCGGCTACGCTCGACAAACCCTGACACAATGGTGTTCGCGTTTT
GGAAGGTCTTTCTGATCCTAAGCTGCCTTGCAGGTCAAGTTAGTATGGTGCAGGTGACCATCCC
AAACAGCATTGTGAACGTGACTATTGGATCTGATGTCACACTTGTCTGCACCTACACCAGCACT
GTGGCCTCCCGAGACAAGCTCTCCATCCAGTGGTCATTCTTTCACAAGAAGGACTTACCACCAA
CTTCCCACAGCCCGTGCCTCAATACTGAGGGTATGGAGGAAAAGGCAGTCAGTCAGTGTCTAAA
TATGGCGCATGCAAGAGACGCTCGGGGAAGATGTAGCTGGACCTCTCAGATTTACTATTCCGAA
GGTGGACAAGCTGTAGCCATCGGGCAATTTAAAGATCGAATTGTAGGGTCCAGCAGTCCAGATA
ATGCATCTATCACCATTTCACATATGCAACCAGCAGATAGTGGTGTCTACATCTGCGATGTTAA
CAACCCTCCTGATTTTGTTGGAAAAAATCAAGGCATCCTCAAAGTCAATGTGTTAGTGAAACCT
TCTAAGCCCTTTTGCAGCATCCAAGGAGTACCAGAAACTGGCCATCCTATATCTCTTTCTTGCC
TCTCGCTGCTTGGGACACCTTCCCCTGTATACTACTGGTATAAACTTGAAGGCGGAGACATCAT
CCCAGTGAAAGAAAACTTCAACCCAGCCACTGGGACTTTGGTTATTGGAAATCTGACCAGTTTT
GAACAAGGTTATTACCAGTGCACAGCTATCAACAACCTTGGCAATAGTTCCTGTGAAATTGATC
TGACTTCTTCTCATCCAGAAGTTGGAATCATCGTTGGGGCGCTGGTGGGGACCCTCGTAGGTGC
TGCCATCATCGTCTCTGTCATGTGCTTTGCAAGGAAAAAAGCAAAGGCAAAGGGGAAAGAAAGG
AAGCGAAATTCAAAGACCACCACAGAACTCGAACCAATGACAAAGGTAAACCAAAGTACAGAGT
TTGAGGCAATGCCAGATGAACACGTGATCCAGCTAGAAGCTACCTTGCCACCTTCTGGCCATGA
GGATGACCCCGATGCCATCCTAGGGCCAGATCATCAGCCTATCCCGGAGCCAGAGGCTGTCCAG
GAGCCTGCCCCGCAGCCTGTCCCAGGGCTGGAGCTTGAGATAAAGCTGGAGCCAGAGCTGAAGC
CAGACCCAGATCCGGAGCCGGAGCTGGAGCCTGAGTCTGAGTCTGAGCCTGGGATTATAGTGGA
GCCCTTGTGTGAGAAGGATAGGGAGTGAGTAAGCCATAGGCTGTAGCCTAAGTACAGTGTTCAT
CGCTAAGGAACTTATTACTGGTATTTGGAATTCAGCTGCCCTAACTAGTCTCCCACCCCCTTCC
TCTGTTCTGACTAACCCTTTTCTAACAAGGCGCCCCTACCATCAATCCCAAACAAATAGGTCAA
GATAAATACAAGGGTTCCTGCATGACTTACACTTTTACTAACATGTAAGCCTAACCGATGACAA
AGTGAGTGATTTCTCGTTCAGATGAAAGTGTTTTGTTTTGCAGCAACATCTACACTGTACTTCA
GAAAATCTCTATTTTCAGCTCATCTTTATTATGTTCCACATGCACACATGACAAGGTGGCATTA
ATTGGATTCGATATTATTCCTAGGATGAGCTGTCAGGGCTTCCCTATTCATTTTGACACTGGCC
ATGAAGACAAGAATTTGCTAGCATTCTCTTGTAGATTGGGGGCAGGGGGAATCCTCAAAAATTG
CAGAGGAGAATATGTAAAGGGTACATATTAATTGGTAGATAGCATTTAAATCTAGGTCTTAAAA
TCAGTGCTTCATTTATCATATTAGATCTCCCAAGGAACCACTCTGCTATACAGTATCTTAAGCA
TAGCAAAAAATTTAAATAACCTAGTTTTCAAATGCAAGATAATCTACAGGCAAACAGTTCCAGA
TAACATTTTCCTTCGGTGACTAAAAAATGTTGATACCATAGGTGATGTACAATTTACCTTTTAA
TGAGATACTATGTTATCACTATATCTGATGCTACCTTACTTAAGAAGGGCCAGAATATGAAACT
GTTCTAAGTGAATACTTAAGATCTATTTTAGATAATCTGAACAAATTATTTAATCTGTTTCACT
GTTGGGATATTCCACAGTAGTAGATAACCATATAAGTACTAAATATTAACCTAACATGCATTGA
TATTACCTCTTTTTTACCTGCCAAAATGTGTTCTCCATTGATATTTTACCCATATACCACCTTG
AAGAAATTTAAAGGTAGATTTTTTCATTTGTGTAATCAGATTTTAAATCTTATTTTGAAGTTCC
ATAAATAACACTCAATAAAATCTCATTTTAATGATCCTAAGGTAAATCTTTCATTAATGTTATT
GACATATACTTTATGTACAATAAAGCATACCCATTTCAGGTGTACCATTTGATGAGTTTTGACA
GATGTATACACCCATGAAACCACCACAATTTAAAGAGAGCATTTCTGTCAATCCAAAGTGTTTC
CTATGCCTTCGTGTAATCCCACCATCACCTTGGACCTAGGCAACCACTGATTTGCTTTCCATCT
TTAGAGATTAGCTTTGCCTTTTCTTGACCTTTGTATAAATGTGATCATATAGTCTGGA

hide sequence

RefSeq Acc Id:

XM_038450611 ⟹ XP_038306539

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	X	83,223,396 - 83,267,781 (+)	NCBI

RefSeq Acc Id:

XM_038450612 ⟹ XP_038306540

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	X	83,223,399 - 83,267,781 (+)	NCBI

RefSeq Acc Id:

XM_038524064 ⟹ XP_038379992

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	X	80,682,761 - 80,726,838 (+)	NCBI

RefSeq Acc Id:

XM_038524065 ⟹ XP_038379993

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	X	80,682,764 - 80,726,838 (+)	NCBI

RefSeq Acc Id:

XM_038588041 ⟹ XP_038443969

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	X	82,187,480 - 82,231,918 (+)	NCBI

RefSeq Acc Id:

XM_038588042 ⟹ XP_038443970

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	X	82,187,483 - 82,231,918 (+)	NCBI

RefSeq Acc Id:

XM_038652557 ⟹ XP_038508485

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	X	82,395,332 - 82,439,388 (+)	NCBI

RefSeq Acc Id:

XM_038652558 ⟹ XP_038508486

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	X	82,395,335 - 82,439,388 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005641711	(Get FASTA)	NCBI Sequence Viewer
	XP_013966835	(Get FASTA)	NCBI Sequence Viewer
	XP_038306539	(Get FASTA)	NCBI Sequence Viewer
	XP_038306540	(Get FASTA)	NCBI Sequence Viewer
	XP_038379992	(Get FASTA)	NCBI Sequence Viewer
	XP_038379993	(Get FASTA)	NCBI Sequence Viewer
	XP_038443969	(Get FASTA)	NCBI Sequence Viewer
	XP_038443970	(Get FASTA)	NCBI Sequence Viewer
	XP_038508485	(Get FASTA)	NCBI Sequence Viewer
	XP_038508486	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000026592.4
	ENSCAFP00000065325.1
	ENSCAFP00040037406.1
	ENSCAFP00040037421.1
	ENSCAFP00845025841
	ENSCAFP00845025841.1
	ENSCAFP00845025887
	ENSCAFP00845025887.1

RefSeq Acc Id:	XP_013966835 ⟸ XM_014111360
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0Z557 (UniProtKB/TrEMBL), A0A8I3NWG2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVFAFWKVFLILSCLAGQVSMVQVTIPNSIVNVTIGSDVTLVCTYTSTVASRDKLSIQWSFFHK KDLPPTSHSPCLNTEGMEEKAVSQCLNMAHARDARGRCSWTSQIYYSEGGQAVAIGQFKDRIVG SSSPDNASITISHMQPADSGVYICDVNNPPDFVGKNQGILKVNVLVKPSKPFCSIQGVPETGHP ISLSCLSLLGTPSPVYYWYKLEGGDIIPVKENFNPATGTLVIGNLTSFEQGYYQCTAINNLGNS SCEIDLTSSHPEVGIIVGALVGTLVGAAIIVSVMCFARKKAKAKGKERKRNSKTTTELEPMTKV NQSTEFEAMPDEHVIQLEATLPPSGHEDDPDAILGPDHQPIPEPEAVQEPAPQPVPGLELEIKL EPELKPDPDPEPELEPESESEPGIIVEPLCEKDRE hide sequence

RefSeq Acc Id:	XP_005641711 ⟸ XM_005641654
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0TKB9 (UniProtKB/TrEMBL), A0A8I3S0N2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MVFAFWKVFLILSCLAGQVSMVQVTIPNSIVNVTIGSDVTLVCTYTSTVASRDKLSIQWSFFHK KDLPPTSIYYSEGGQAVAIGQFKDRIVGSSSPDNASITISHMQPADSGVYICDVNNPPDFVGKN QGILKVNVLVKPSKPFCSIQGVPETGHPISLSCLSLLGTPSPVYYWYKLEGGDIIPVKENFNPA TGTLVIGNLTSFEQGYYQCTAINNLGNSSCEIDLTSSHPEVGIIVGALVGTLVGAAIIVSVMCF ARKKAKAKGKERKRNSKTTTELEPMTKVNQSTEFEAMPDEHVIQLEATLPPSGHEDDPDAILGP DHQPIPEPEAVQEPAPQPVPGLELEIKLEPELKPDPDPEPELEPESESEPGIIVEPLCEKDRE hide sequence

Ensembl Acc Id:

ENSCAFP00000026592 ⟸ ENSCAFT00000028591

Ensembl Acc Id:

ENSCAFP00000065325 ⟸ ENSCAFT00000085870

RefSeq Acc Id:	XP_038379992 ⟸ XM_038524064
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038379993 ⟸ XM_038524065
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038508485 ⟸ XM_038652557
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038508486 ⟸ XM_038652558
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038306539 ⟸ XM_038450611
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0Z557 (UniProtKB/TrEMBL), A0A8I3NWG2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038306540 ⟸ XM_038450612
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0TKB9 (UniProtKB/TrEMBL), A0A8I3S0N2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038443969 ⟸ XM_038588041
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0Z557 (UniProtKB/TrEMBL), A0A8I3NWG2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038443970 ⟸ XM_038588042
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0TKB9 (UniProtKB/TrEMBL), A0A8I3S0N2 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845025841 ⟸ ENSCAFT00845033020

Ensembl Acc Id:

ENSCAFP00845025887 ⟸ ENSCAFT00845033074

Protein Domains

Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000018004	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00040023070	UniProtKB/TrEMBL
	ENSCAFG00845018670	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000028591.5	UniProtKB/TrEMBL
	ENSCAFT00000085870.2	UniProtKB/TrEMBL
	ENSCAFT00040042877.1	UniProtKB/TrEMBL
	ENSCAFT00040042893.1	UniProtKB/TrEMBL
	ENSCAFT00845033020	ENTREZGENE
	ENSCAFT00845033020.1	UniProtKB/TrEMBL
	ENSCAFT00845033074	ENTREZGENE
	ENSCAFT00845033074.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Ig_sub2	UniProtKB/TrEMBL
	Ig_V-set	UniProtKB/TrEMBL
	Myelin_P0-rel	UniProtKB/TrEMBL
	VSIG1	UniProtKB/TrEMBL
NCBI Gene	VSIG1	ENTREZGENE
PANTHER	PTHR44974	UniProtKB/TrEMBL
	V-SET AND IMMUNOGLOBULIN DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	Ig_3	UniProtKB/TrEMBL
	V-set	UniProtKB/TrEMBL
PRINTS	MYELINP0	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
SMART	IGc2	UniProtKB/TrEMBL
	IGv	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A8C0TKB9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0Z557	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3NWG2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3S0N2	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:54610	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar