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Gene: ELP4 (elongator acetyltransferase complex subunit 4) Canis lupus familiaris

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Symbol:

ELP4

Name:

elongator acetyltransferase complex subunit 4

RGD ID:

12132556

Description:

ENCODES a protein that exhibits RNA polymerase II complex binding (ortholog); INVOLVED IN regulation of transcription by RNA polymerase II (inferred); tRNA processing (inferred); tRNA wobble uridine modification (inferred); ASSOCIATED WITH aniridia (ortholog); aniridia 1 (ortholog); Aniridia 2 (ortholog); FOUND IN cytoplasm (inferred); elongator holoenzyme complex (inferred); nucleoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

elongation protein 4 homolog; elongator complex protein 4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	35,638,606 - 35,880,194 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	35,639,011 - 36,024,005 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	35,287,764 - 35,529,314 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	36,282,362 - 36,524,334 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	36,282,375 - 36,667,220 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	35,855,939 - 36,097,717 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	35,437,230 - 35,678,935 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	36,072,284 - 36,314,202 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

aniridia (ISO)

aniridia 1 (ISO)

Aniridia 2 (ISO)

Anophthalmia (ISO)

anterior segment dysgenesis 5 (ISO)

autism spectrum disorder (ISO)

autosomal dominant keratitis (ISO)

Chromosome 11p Deletion Syndrome (ISO)

coloboma of optic nerve (ISO)

Denys-Drash syndrome (ISO)

Developmental Disabilities (ISO)

foveal hypoplasia 1 (ISO)

gastrointestinal stromal tumor (ISO)

genetic disease (ISO)

Hypertelorism (ISO)

intellectual disability (ISO)

microphthalmia (ISO)

Peters anomaly (ISO)

schizophrenia (ISO)

syndromic microphthalmia 5 (ISO)

WAGR syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of transcription by RNA polymerase II (IEA)

tRNA processing (IEA)

tRNA wobble uridine modification (IBA,IEA)

Cellular Component

cytoplasm (IBA,IEA)

elongator holoenzyme complex (IBA,IEA)

nucleoplasm (IEA)

nucleus (IEA)

transcription elongation factor complex (IBA,IEA)

Molecular Function

phosphorylase kinase regulator activity (IEA)

protein binding (ISO)

RNA polymerase II complex binding (IEA,ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

ELP4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	35,638,606 - 35,880,194 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	35,639,011 - 36,024,005 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	35,287,764 - 35,529,314 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	36,282,362 - 36,524,334 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	36,282,375 - 36,667,220 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	35,855,939 - 36,097,717 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	35,437,230 - 35,678,935 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	36,072,284 - 36,314,202 (-)	NCBI		UU_Cfam_GSD_1.0

ELP4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	31,509,767 - 31,790,324 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	31,509,755 - 31,790,324 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	31,531,314 - 31,811,872 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	31,487,873 - 31,761,905 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	31,487,900 - 31,761,895	NCBI
Celera	11	31,678,743 - 31,952,788 (+)	NCBI		Celera
Cytogenetic Map	11	p13	NCBI
HuRef	11	31,226,047 - 31,500,747 (+)	NCBI		HuRef
CHM1_1	11	31,530,849 - 31,804,836 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	31,645,605 - 31,926,139 (+)	NCBI		T2T-CHM13v2.0

Elp4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	105,527,665 - 105,734,909 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	105,531,372 - 105,734,909 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	105,697,320 - 105,904,564 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	105,701,027 - 105,904,564 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	105,540,266 - 105,744,657 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	105,500,948 - 105,705,339 (-)	NCBI		MGSCv36	mm8
Celera	2	106,921,492 - 107,127,004 (-)	NCBI		Celera
Cytogenetic Map	2	E3	NCBI
cM Map	2	55.33	NCBI

Elp4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	112,617,020 - 112,839,963 (-)	NCBI		GRCr8
mRatBN7.2	3	92,162,271 - 92,385,251 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	92,162,280 - 92,385,243 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	95,658,082 - 95,881,042 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	104,257,011 - 104,479,972 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	102,085,027 - 102,307,989 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	95,733,810 - 95,954,987 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	3	102,353,650 - 102,575,110 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	91,154,930 - 91,309,491 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	91,216,738 - 91,434,730 (-)	NCBI		Celera
Cytogenetic Map	3	q33	NCBI

Elp4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955476	9,849,365 - 10,054,583 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955476	9,850,110 - 10,054,313 (+)	NCBI	ChiLan1.0	ChiLan1.0

ELP4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	33,720,033 - 33,994,711 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	33,724,543 - 33,999,182 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	31,473,439 - 31,754,446 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	31,362,973 - 31,637,425 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

Elp4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	32,859,776 - 33,091,342 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	5,986,322 - 6,216,145 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936533	5,985,873 - 6,216,124 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ELP4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	29,004,987 - 29,230,077 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	29,006,456 - 29,230,092 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	31,513,261 - 31,737,288 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ELP4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	33,419,313 - 33,679,046 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	33,421,038 - 33,678,990 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	130,576,771 - 130,842,413 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Elp4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624766	20,343,803 - 20,531,873 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624766	20,343,776 - 20,536,627 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ELP4
1946 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014121289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022405381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038424192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038424193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038424194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038500541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038500542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038500544	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038563120	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038563121	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038563122	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038627240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038627241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038627242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_540560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_014121289 ⟹ XP_013976764

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	18	35,638,606 - 35,880,194 (-)	NCBI
Dog10K_Boxer_Tasha	18	35,287,764 - 35,529,314 (-)	NCBI

Sequence:

show sequence

CAGAGTTCCCATTGGGCCGACGCGGGAAGCTCCAAGATGGCGGCAGCGGCGACCTGCGGCACCA
GCGCTGGCAATAAGGGATGTACGGCGGCGGCGGCGGCGGCAGCAGGCGGCAAGAACAACGTCAC
CAGTTTCCAGAGGAAGGGTCCTAGAGCCAGCGTCCCTGACAGCGGCTGTGCTCGACTGGTGTCC
ATCGCGGGCACACGACCGTCGGTGCGCAACGGACAGCTGCTGGTATCAACCGGGCTCCCAGCCC
TGGACCAGCTCTTAGGTGGAGGTTTGGCCGTTGGAACAGTTCTTCTAATTGAAGAGGATAAATA
TAATATTTATTCTTCTTTGCTCTTCAAGTATTTCCTGGCAGAAGGAGTTATCAATGGGCATACT
TTGTTGGTTGCATCTGCAAAAGAAGACCCTGCTGATATTTTACAGGAACTTCCTGCACCATTAC
TTGATGATAATTGTAAAAAAGATTTTGATGAAGATGTAGGCAATCATAAAACACCAGAATCTAA
TATTAAGATGAAAATAGCTTGGCGTTACCAGTTATTACCCAAGATGGAGCCTGGACCAGTATCT
TCAAGATTCGGTCACTATTATGATTTATCAAAAAGGATGCCACAAGAACTAATTGAGACTTCAA
AATGGCATGGATTTTTTTTTCCAGAAAAATTATCCCCAACTCTTAATATAGAACCATGTTCTTT
GACCCATGGCTACATAAAGCTGCTTCAGTTTATCCAGAACGTCATATATGAGGAAGGATTTGAT
GGATCCAATCCCCAGGTAAAAAAACAGAAAAACATTTTAAGAATAGGAATCCAGAATCTTGGAT
CACCTTTATGGGGAGATGACATTTGCTGTACAGAAAACTGTGACAACAGCCACAGCCTTACAAA
GTTCCTGTATGTTCTCCGTGGTCTTCTACGAACCTCTCTTTCAGCCTGTATCATAACAATGCCA
ACACATCTTATCCAAAATAAAGCAATTATTGCTCGTGTTACAAACTTGTCAGATACAGTTGTTG
GTCTGGAATCATTTATTGGTTCTGAAAGAGAAACCAACCCATTATATAAGGATTATCATGGTTT
GATTCATATTCGACAGATTCCTCGGCTTAATAACTTGATTTATGATGTATCCGATGTTAAAGAC
TTAGCTTTTAAATTAAAAAGGAAGCTATTCACCATTGAGCGGCTGCATTTGCCTCCAGACTTGT
CAGACACAGTGAGCCGCTCGAGCAAACAGATTCCCGCAGCATCCTCCAGGCTGCTGGGCCAGGA
GTGTGGCGTGATGGCCGGAGGCAGGAAGCACCTGGACTTCTAGCGATCCCTCCTTAGCCGTTGC
ACGCGGGATTCTAGGACACTCTCATTACGATCGCTAATAGCTTAGGTAAATATTTTCCTTAACG
ATTTGACCCTCCAGTCCTCGGAAAACAGTCCGGATTGCGGAACGAGGCCACCGTGCTTCATTTT
CCTTAAACCGACTCCTTAGCCGGAAAGACTACGGCAAAAGTACTTTTCAGTTTAAGAGTTGTTT
TCGGCCCTCTTTAGAGAAAACAGGTAATTTCATTTTTGAATAAAGCATCAGAAGCTCCAAGTGC
CTTGCAGTGGTCACGGGTGTCCGCGCATTAAGGCACTTCGTTCGCGGTCAGTGCCTATTGCAGC
AGGTAGTATAAACCAGGATGAAATTCGTAACCGCATACGAACAAGAGTGTCTGTCTATTTCTGG
AAAAGTCACTTGCCACCAGAAAATGCCCAGGTTGTTTTTTTTTTTAAGTGGAAAACTCACTTGC
TAATGTATGAAGGTTCTAATAAAATGAATTTGCATTTATG

hide sequence

RefSeq Acc Id:

XM_022405381 ⟹ XP_022261089

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	18	35,712,659 - 35,880,194 (-)	NCBI
Dog10K_Boxer_Tasha	18	35,361,712 - 35,529,314 (-)	NCBI

Sequence:

show sequence

CAGAGTTCCCATTGGGCCGACGCGGGAAGCTCCAAGATGGCGGCAGCGGCGACCTGCGGCACCA
GCGCTGGCAATAAGGGATGTACGGCGGCGGCGGCGGCGGCAGCAGGCGGCAAGAACAACGTCAC
CAGTTTCCAGAGGAAGGGTCCTAGAGCCAGCGTCCCTGACAGCGGCTGTGCTCGACTGGTGTCC
ATCGCGGGCACACGACCGTCGGTGCGCAACGGACAGCTGCTGGTATCAACCGGGCTCCCAGCCC
TGGACCAGCTCTTAGGTGGAGGTTTGGCCGTTGGAACAGTTCTTCTAATTGAAGAGGATAAATA
TAATATTTATTCTTCTTTGCTCTTCAAGTATTTCCTGGCAGAAGGAGTTATCAATGGGCATACT
TTGTTGGTTGCATCTGCAAAAGAAGACCCTGCTGATATTTTACAGGAACTTCCTGCACCATTAC
TTGATGATAATTGTAAAAAAGATTTTGATGAAGATGTAGGCAATCATAAAACACCAGAATCTAA
TATTAAGATGAAAATAGCTTGGCGTTACCAGTTATTACCCAAGATGGAGCCTGGACCAGTATCT
TCAAGATTCGGTCACTATTATGATTTATCAAAAAGGATGCCACAAGAACTAATTGAGACTTCAA
AATGGCATGGATTTTTTTTTCCAGAAAAATTATCCCCAACTCTTAATATAGAACCATGTTCTTT
GACCCATGGCTACATAAAGCTGCTTCAGTTTATCCAGAACGTCATATATGAGGAAGGATTTGAT
GGATCCAATCCCCAGGTAAAAAAACAGAAAAACATTTTAAGAATAGGAATCCAGAATCTTGGAT
CACCTTTATGGGGAGATGACATTTGCTGTACAGAAAACTGTGACAACAGCCACAGCCTTACAAA
GTTCCTGTATGTTCTCCGTGGTCTTCTACGAACCTCTCTTTCAGCCTGTATCATAACAATGCCA
ACACATCTTATCCAAAATAAAGCAATTATTGCTCGTGTTACAAACTTGTCAGATACAGTTGTTG
GTCTGGAATCATTTATTGGTTCTGAAAGAGAAACCAACCCATTATATAAGGATTATCATGGTTT
GATTCATATTCGACAGATTCCTCGGCTTAATAACTTGATTTATGATGTATCCGATGTTAAAGAC
TTAGCTTTTAAATTAAAAAGGAAGCTATTCACCATTGAGGTCCCAAGAAATTGAATAATGGGCC
AACTTCTTCATTCATAAATAAGCCCATGGACTTTTAATGGTGATGATATTCTTTAAATGAAGTA
CTTGTGATTATTCTTGAGAATTTTTAGGATTTTGTTTCTTTGTTTCTGCCTTGAGATAGTACTT
ATACAACTTATAATTTAACACATGTAGTAGGTAGCTATGATGGAATTATTGTCTACAGTGTAAA
ATGTCTTAACTTGTTTCAGTCAAAAATGAGGAATTTAAATGCACCTAATCGGGTCTCATCAAAA
GCAGTACCACTCTCCCAATTATTAATTATATTTTATATTGGTTAGAGCAATTGATAAAGTGACT
AGGGTACAAGTAATAGAAGAGGTAAGGGAATTGTCCCACTTATTTTTTTCAGAAAGTTCAGAAA
GAAAAAGTTAATTTCAAGAAAAAGACCCTTTAAACTTGAGTATCAGGGAAAATAAATTTTTTGA
GAACTTTTAAGGGAAAATAATGCATGAACATAGCCAGAACAGCAGTTTATATTTAACAGAACTA
AATGGCCACATTTTCAAGTAAAGTACGCCCTGGCATTTGAACAGCTGTTATATCTAAATCAGAT
TTGAATACTGTTGTTTAACCTTCCCAGCTGTAGCGGGGGTGGTTTGTTAGTCTAATTCAGTATA
AAATATGCATAGT

hide sequence

RefSeq Acc Id:

XM_038424192 ⟹ XP_038280120

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	18	36,282,362 - 36,524,334 (-)	NCBI

RefSeq Acc Id:

XM_038424193 ⟹ XP_038280121

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	18	36,282,362 - 36,524,334 (-)	NCBI

RefSeq Acc Id:

XM_038424194 ⟹ XP_038280122

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	18	36,356,344 - 36,524,334 (-)	NCBI

RefSeq Acc Id:

XM_038500541 ⟹ XP_038356469

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	18	35,855,939 - 36,097,717 (-)	NCBI

RefSeq Acc Id:

XM_038500542 ⟹ XP_038356470

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	18	35,855,939 - 36,097,717 (-)	NCBI

RefSeq Acc Id:

XM_038500544 ⟹ XP_038356472

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	18	35,929,918 - 36,097,717 (-)	NCBI

RefSeq Acc Id:

XM_038563120 ⟹ XP_038419048

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	18	36,072,284 - 36,314,202 (-)	NCBI

RefSeq Acc Id:

XM_038563121 ⟹ XP_038419049

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	18	36,072,284 - 36,314,202 (-)	NCBI

RefSeq Acc Id:

XM_038563122 ⟹ XP_038419050

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	18	36,146,244 - 36,314,202 (-)	NCBI

RefSeq Acc Id:

XM_038627240 ⟹ XP_038483168

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	18	35,437,230 - 35,678,935 (-)	NCBI

RefSeq Acc Id:

XM_038627241 ⟹ XP_038483169

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	18	35,437,230 - 35,678,935 (-)	NCBI

RefSeq Acc Id:

XM_038627242 ⟹ XP_038483170

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	18	35,511,241 - 35,678,935 (-)	NCBI

RefSeq Acc Id:

XM_540560 ⟹ XP_540560

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	18	35,638,606 - 35,880,193 (-)	NCBI
Dog10K_Boxer_Tasha	18	35,287,764 - 35,529,314 (-)	NCBI

Sequence:

show sequence

AGAGTTCCCATTGGGCCGACGCGGGAAGCTCCAAGATGGCGGCAGCGGCGACCTGCGGCACCAG
CGCTGGCAATAAGGGATGTACGGCGGCGGCGGCGGCGGCAGCAGGCGGCAAGAACAACGTCACC
AGTTTCCAGAGGAAGGGTCCTAGAGCCAGCGTCCCTGACAGCGGCTGTGCTCGACTGGTGTCCA
TCGCGGGCACACGACCGTCGGTGCGCAACGGACAGCTGCTGGTATCAACCGGGCTCCCAGCCCT
GGACCAGCTCTTAGGTGGAGGTTTGGCCGTTGGAACAGTTCTTCTAATTGAAGAGGATAAATAT
AATATTTATTCTTCTTTGCTCTTCAAGTATTTCCTGGCAGAAGGAGTTATCAATGGGCATACTT
TGTTGGTTGCATCTGCAAAAGAAGACCCTGCTGATATTTTACAGGAACTTCCTGCACCATTACT
TGATGATAATTGTAAAAAAGATTTTGATGAAGATGTAGGCAATCATAAAACACCAGAATCTAAT
ATTAAGATGAAAATAGCTTGGCGTTACCAGTTATTACCCAAGATGGAGCCTGGACCAGTATCTT
CAAGATTCGGTCACTATTATGATTTATCAAAAAGGATGCCACAAGAACTAATTGAGACTTCAAA
ATGGCATGGATTTTTTTTTCCAGAAAAATTATCCCCAACTCTTAATATAGAACCATGTTCTTTG
ACCCATGGCTACATAAAGCTGCTTCAGTTTATCCAGAACGTCATATATGAGGAAGGATTTGATG
GATCCAATCCCCAGAAAAAACAGAAAAACATTTTAAGAATAGGAATCCAGAATCTTGGATCACC
TTTATGGGGAGATGACATTTGCTGTACAGAAAACTGTGACAACAGCCACAGCCTTACAAAGTTC
CTGTATGTTCTCCGTGGTCTTCTACGAACCTCTCTTTCAGCCTGTATCATAACAATGCCAACAC
ATCTTATCCAAAATAAAGCAATTATTGCTCGTGTTACAAACTTGTCAGATACAGTTGTTGGTCT
GGAATCATTTATTGGTTCTGAAAGAGAAACCAACCCATTATATAAGGATTATCATGGTTTGATT
CATATTCGACAGATTCCTCGGCTTAATAACTTGATTTATGATGTATCCGATGTTAAAGACTTAG
CTTTTAAATTAAAAAGGAAGCTATTCACCATTGAGCGGCTGCATTTGCCTCCAGACTTGTCAGA
CACAGTGAGCCGCTCGAGCAAACAGATTCCCGCAGCATCCTCCAGGCTGCTGGGCCAGGAGTGT
GGCGTGATGGCCGGAGGCAGGAAGCACCTGGACTTCTAGCGATCCCTCCTTAGCCGTTGCACGC
GGGATTCTAGGACACTCTCATTACGATCGCTAATAGCTTAGGTAAATATTTTCCTTAACGATTT
GACCCTCCAGTCCTCGGAAAACAGTCCGGATTGCGGAACGAGGCCACCGTGCTTCATTTTCCTT
AAACCGACTCCTTAGCCGGAAAGACTACGGCAAAAGTACTTTTCAGTTTAAGAGTTGTTTTCGG
CCCTCTTTAGAGAAAACAGGTAATTTCATTTTTGAATAAAGCATCAGAAGCTCCAAGTGCCTTG
CAGTGGTCACGGGTGTCCGCGCATTAAGGCACTTCGTTCGCGGTCAGTGCCTATTGCAGCAGGT
AGTATAAACCAGGATGAAATTCGTAACCGCATACGAACAAGAGTGTCTGTCTATTTCTGGAAAA
GTCACTTGCCACCAGAAAATGCCCAGGTTGTTTTTTTTTTTAAGTGGAAAACTCACTTGCTAAT
GTATGAAGGTTCTAATAAAATGAATTTGCATTTATG

hide sequence

Protein Sequences


Protein RefSeqs	XP_013976764	(Get FASTA)	NCBI Sequence Viewer
	XP_022261089	(Get FASTA)	NCBI Sequence Viewer
	XP_038280120	(Get FASTA)	NCBI Sequence Viewer
	XP_038280121	(Get FASTA)	NCBI Sequence Viewer
	XP_038280122	(Get FASTA)	NCBI Sequence Viewer
	XP_038356469	(Get FASTA)	NCBI Sequence Viewer
	XP_038356470	(Get FASTA)	NCBI Sequence Viewer
	XP_038356472	(Get FASTA)	NCBI Sequence Viewer
	XP_038419048	(Get FASTA)	NCBI Sequence Viewer
	XP_038419049	(Get FASTA)	NCBI Sequence Viewer
	XP_038419050	(Get FASTA)	NCBI Sequence Viewer
	XP_038483168	(Get FASTA)	NCBI Sequence Viewer
	XP_038483169	(Get FASTA)	NCBI Sequence Viewer
	XP_038483170	(Get FASTA)	NCBI Sequence Viewer
	XP_540560	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000011154.4
	ENSCAFP00000036864.2
	ENSCAFP00000044112.2
	ENSCAFP00000061131.2
	ENSCAFP00000061435.2
	ENSCAFP00000064964.2
	ENSCAFP00000071647.1
	ENSCAFP00040033216.1
	ENSCAFP00040033259.1
	ENSCAFP00040033485.1
	ENSCAFP00040033520.1
	ENSCAFP00040033536.1
	ENSCAFP00845039000.1
	ENSCAFP00845039044.1
	ENSCAFP00845039085.1
	ENSCAFP00845039164
	ENSCAFP00845039164.1
	ENSCAFP00845039177.1
	ENSCAFP00845039202.1
	ENSCAFP00845039222.1
	ENSCAFP00845039289.1

RefSeq Acc Id:	XP_540560 ⟸ XM_540560
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0JLK6 (UniProtKB/TrEMBL), A0A8I3QG50 (UniProtKB/TrEMBL), A0A8P0SXG6 (UniProtKB/TrEMBL), A0A8C0TEI3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAATCGTSAGNKGCTAAAAAAAGGKNNVTSFQRKGPRASVPDSGCARLVSIAGTRPSVRNGQ LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSSLLFKYFLAEGVINGHTLLVASAKEDPAD ILQELPAPLLDDNCKKDFDEDVGNHKTPESNIKMKIAWRYQLLPKMEPGPVSSRFGHYYDLSKR MPQELIETSKWHGFFFPEKLSPTLNIEPCSLTHGYIKLLQFIQNVIYEEGFDGSNPQKKQKNIL RIGIQNLGSPLWGDDICCTENCDNSHSLTKFLYVLRGLLRTSLSACIITMPTHLIQNKAIIARV TNLSDTVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLIYDVSDVKDLAFKLKRKLFTIE RLHLPPDLSDTVSRSSKQIPAASSRLLGQECGVMAGGRKHLDF hide sequence

RefSeq Acc Id:	XP_013976764 ⟸ XM_014121289
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0TEI3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAATCGTSAGNKGCTAAAAAAAGGKNNVTSFQRKGPRASVPDSGCARLVSIAGTRPSVRNGQ LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSSLLFKYFLAEGVINGHTLLVASAKEDPAD ILQELPAPLLDDNCKKDFDEDVGNHKTPESNIKMKIAWRYQLLPKMEPGPVSSRFGHYYDLSKR MPQELIETSKWHGFFFPEKLSPTLNIEPCSLTHGYIKLLQFIQNVIYEEGFDGSNPQVKKQKNI LRIGIQNLGSPLWGDDICCTENCDNSHSLTKFLYVLRGLLRTSLSACIITMPTHLIQNKAIIAR VTNLSDTVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLIYDVSDVKDLAFKLKRKLFTI ERLHLPPDLSDTVSRSSKQIPAASSRLLGQECGVMAGGRKHLDF hide sequence

RefSeq Acc Id:	XP_022261089 ⟸ XM_022405381
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0TEI3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAAATCGTSAGNKGCTAAAAAAAGGKNNVTSFQRKGPRASVPDSGCARLVSIAGTRPSVRNGQ LLVSTGLPALDQLLGGGLAVGTVLLIEEDKYNIYSSLLFKYFLAEGVINGHTLLVASAKEDPAD ILQELPAPLLDDNCKKDFDEDVGNHKTPESNIKMKIAWRYQLLPKMEPGPVSSRFGHYYDLSKR MPQELIETSKWHGFFFPEKLSPTLNIEPCSLTHGYIKLLQFIQNVIYEEGFDGSNPQVKKQKNI LRIGIQNLGSPLWGDDICCTENCDNSHSLTKFLYVLRGLLRTSLSACIITMPTHLIQNKAIIAR VTNLSDTVVGLESFIGSERETNPLYKDYHGLIHIRQIPRLNNLIYDVSDVKDLAFKLKRKLFTI EVPRN hide sequence

RefSeq Acc Id:	XP_038356470 ⟸ XM_038500542
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038356469 ⟸ XM_038500541
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038356472 ⟸ XM_038500544
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038483169 ⟸ XM_038627241
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038483168 ⟸ XM_038627240
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038483170 ⟸ XM_038627242
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038280121 ⟸ XM_038424193
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0JLK6 (UniProtKB/TrEMBL), A0A8I3QG50 (UniProtKB/TrEMBL), A0A8P0SXG6 (UniProtKB/TrEMBL), A0A8C0TEI3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038280120 ⟸ XM_038424192
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0TEI3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038280122 ⟸ XM_038424194
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0TEI3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038419049 ⟸ XM_038563121
- Peptide Label:	isoform X2
- UniProtKB:	A0A8C0JLK6 (UniProtKB/TrEMBL), A0A8C0TEI3 (UniProtKB/TrEMBL), A0A8I3QG50 (UniProtKB/TrEMBL), A0A8P0SXG6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038419048 ⟸ XM_038563120
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0TEI3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038419050 ⟸ XM_038563122
- Peptide Label:	isoform X3
- UniProtKB:	A0A8C0TEI3 (UniProtKB/TrEMBL)

Protein Domains

Promoters

RGD ID:

13686491

Promoter ID:

EPDNEW_C4557

Type:

multiple initiation site

Name:

ELP4_1

Description:

elongator acetyltransferase complex subunit 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_C4559

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	18	35,880,171 - 35,880,231	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000007510	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00040020583	UniProtKB/TrEMBL
	ENSCAFG00845028184	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000012029.5	UniProtKB/TrEMBL
	ENSCAFT00000047952.4	UniProtKB/TrEMBL
	ENSCAFT00000062465.2	UniProtKB/TrEMBL
	ENSCAFT00000064425.2	UniProtKB/TrEMBL
	ENSCAFT00000067505.2	UniProtKB/TrEMBL
	ENSCAFT00000080725.2	UniProtKB/TrEMBL
	ENSCAFT00000101982.1	UniProtKB/TrEMBL
	ENSCAFT00040038104.1	UniProtKB/TrEMBL
	ENSCAFT00040038152.1	UniProtKB/TrEMBL
	ENSCAFT00040038395.1	UniProtKB/TrEMBL
	ENSCAFT00040038436.1	UniProtKB/TrEMBL
	ENSCAFT00040038455.1	UniProtKB/TrEMBL
	ENSCAFT00845049729.1	UniProtKB/TrEMBL
	ENSCAFT00845049786.1	UniProtKB/TrEMBL
	ENSCAFT00845049838.1	UniProtKB/TrEMBL
	ENSCAFT00845049942	ENTREZGENE
	ENSCAFT00845049942.1	UniProtKB/TrEMBL
	ENSCAFT00845049960.1	UniProtKB/TrEMBL
	ENSCAFT00845049995.1	UniProtKB/TrEMBL
	ENSCAFT00845050023.1	UniProtKB/TrEMBL
	ENSCAFT00845050107.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.287.110	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	DnaJ_domain	UniProtKB/TrEMBL
	Elongator_complex_protein_4	UniProtKB/TrEMBL
	J_dom_sf	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
NCBI Gene	ELP4	ENTREZGENE
PANTHER	ELONGATOR COMPLEX PROTEIN 4	UniProtKB/TrEMBL
	PTHR12896	UniProtKB/TrEMBL
Pfam	DnaJ	UniProtKB/TrEMBL
	PAXNEB	UniProtKB/TrEMBL
PRINTS	JDOMAIN	UniProtKB/TrEMBL
PROSITE	DNAJ_2	UniProtKB/TrEMBL
SMART	DnaJ	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46565	UniProtKB/TrEMBL
UniProt	A0A8C0JLK6	ENTREZGENE
	A0A8C0TAD7_CANLF	UniProtKB/TrEMBL
	A0A8C0TAI6_CANLF	UniProtKB/TrEMBL
	A0A8C0TEI3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0Z315_CANLF	UniProtKB/TrEMBL
	A0A8C0Z3C2_CANLF	UniProtKB/TrEMBL
	A0A8I3PVT6_CANLF	UniProtKB/TrEMBL
	A0A8I3PW13_CANLF	UniProtKB/TrEMBL
	A0A8I3PWV5_CANLF	UniProtKB/TrEMBL
	A0A8I3PY34_CANLF	UniProtKB/TrEMBL
	A0A8I3Q4I8_CANLF	UniProtKB/TrEMBL
	A0A8I3QFW5_CANLF	UniProtKB/TrEMBL
	A0A8I3QG50	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3SBF1_CANLF	UniProtKB/TrEMBL
	A0A8P0PAA9_CANLF	UniProtKB/TrEMBL
	A0A8P0PM40_CANLF	UniProtKB/TrEMBL
	A0A8P0SXG6	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:108120	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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