ZCRB1 (zinc finger CCHC-type and RNA binding motif containing 1) - Rat Genome Database

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Gene: ZCRB1 (zinc finger CCHC-type and RNA binding motif containing 1) Canis lupus familiaris
Analyze
Symbol: ZCRB1
Name: zinc finger CCHC-type and RNA binding motif containing 1
RGD ID: 12123896
Description: ENCODES a protein that exhibits RNA binding (inferred); zinc ion binding (inferred); INVOLVED IN mRNA processing (inferred); mRNA splicing, via spliceosome (inferred); RNA splicing (inferred); FOUND IN nucleus (inferred); spliceosomal complex (inferred); U12-type spliceosomal complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger CCHC-type and RNA-binding motif-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12711,590,152 - 11,605,079 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2711,590,332 - 11,604,986 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2734,698,316 - 34,713,224 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02711,786,482 - 11,801,404 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2711,786,520 - 11,801,387 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12711,604,795 - 11,619,702 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02711,628,882 - 11,643,802 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02734,943,879 - 34,959,060 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ZCRB1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12711,590,152 - 11,605,079 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2711,590,332 - 11,604,986 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2734,698,316 - 34,713,224 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02711,786,482 - 11,801,404 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2711,786,520 - 11,801,387 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12711,604,795 - 11,619,702 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02711,628,882 - 11,643,802 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02734,943,879 - 34,959,060 (-)NCBIUU_Cfam_GSD_1.0
ZCRB1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381242,312,086 - 42,326,094 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1242,312,086 - 42,326,257 (-)EnsemblGRCh38hg38GRCh38
GRCh371242,705,888 - 42,719,896 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361240,992,155 - 41,006,199 (-)NCBINCBI36Build 36hg18NCBI36
Celera1241,507,709 - 41,521,753 (-)NCBICelera
Cytogenetic Map12q12NCBI
HuRef1239,732,766 - 39,746,809 (-)NCBIHuRef
CHM1_11242,672,498 - 42,686,541 (-)NCBICHM1_1
T2T-CHM13v2.01242,270,020 - 42,284,029 (-)NCBIT2T-CHM13v2.0
Zcrb1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391593,283,987 - 93,296,218 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1593,283,978 - 93,296,215 (-)EnsemblGRCm39 Ensembl
GRCm381593,386,106 - 93,398,341 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1593,386,097 - 93,398,334 (-)EnsemblGRCm38mm10GRCm38
MGSCv371593,216,544 - 93,228,721 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361593,214,293 - 93,226,470 (-)NCBIMGSCv36mm8
Celera1595,530,863 - 95,543,026 (-)NCBICelera
Cytogenetic Map15E3NCBI
cM Map1547.53NCBI
Zcrb1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87126,404,675 - 126,418,012 (-)NCBIGRCr8
mRatBN7.27124,525,227 - 124,538,564 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7124,524,870 - 124,571,261 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7126,300,190 - 126,313,312 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07128,526,061 - 128,539,183 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07128,447,361 - 128,460,725 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07134,588,902 - 134,602,239 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7134,588,903 - 134,602,239 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07134,255,942 - 134,269,279 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47131,852,634 - 131,865,971 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17131,929,540 - 131,943,889 (-)NCBI
Celera7120,923,040 - 120,935,959 (-)NCBICelera
Cytogenetic Map7q35NCBI
Zcrb1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555001,684,562 - 1,782,905 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555001,684,003 - 1,784,075 (-)NCBIChiLan1.0ChiLan1.0
ZCRB1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21051,834,397 - 51,847,687 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11251,831,071 - 51,844,447 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01246,392,094 - 46,405,453 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11247,256,625 - 47,270,388 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1247,256,625 - 47,271,832 (+)Ensemblpanpan1.1panPan2
Zcrb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494572,107,398 - 72,119,942 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365121,044,899 - 1,057,497 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZCRB1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl573,538,985 - 73,556,233 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1573,538,982 - 73,556,240 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2576,457,402 - 76,468,361 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZCRB1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11138,547,928 - 38,563,803 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1138,547,881 - 38,564,522 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037207,999,230 - 208,015,185 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in ZCRB1
215 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014108520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022411578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038438494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038459998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038513180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038577375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038640957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_534835 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000049381   ⟹   ENSCAFP00000038540
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2711,590,332 - 11,604,986 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845053780   ⟹   ENSCAFP00845042266
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2711,786,520 - 11,801,387 (+)Ensembl
RefSeq Acc Id: XM_014108520   ⟹   XP_013963995
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12711,590,152 - 11,605,079 (+)NCBI
Dog10K_Boxer_Tasha2734,698,316 - 34,713,223 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038438492   ⟹   XP_038294420
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02711,786,483 - 11,801,404 (+)NCBI
RefSeq Acc Id: XM_038438493   ⟹   XP_038294421
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02711,786,482 - 11,801,404 (+)NCBI
RefSeq Acc Id: XM_038438494   ⟹   XP_038294422
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.02711,786,483 - 11,801,404 (+)NCBI
RefSeq Acc Id: XM_038459998   ⟹   XP_038315926
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha2734,698,316 - 34,713,224 (-)NCBI
RefSeq Acc Id: XM_038513178   ⟹   XP_038369106
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12711,604,796 - 11,619,702 (+)NCBI
RefSeq Acc Id: XM_038513179   ⟹   XP_038369107
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12711,604,795 - 11,619,702 (+)NCBI
RefSeq Acc Id: XM_038513180   ⟹   XP_038369108
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.12711,604,796 - 11,619,702 (+)NCBI
RefSeq Acc Id: XM_038577373   ⟹   XP_038433301
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02734,943,879 - 34,959,059 (-)NCBI
RefSeq Acc Id: XM_038577374   ⟹   XP_038433302
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02734,943,879 - 34,959,060 (-)NCBI
RefSeq Acc Id: XM_038577375   ⟹   XP_038433303
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.02734,943,879 - 34,959,059 (-)NCBI
RefSeq Acc Id: XM_038640955   ⟹   XP_038496883
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02711,628,883 - 11,643,802 (+)NCBI
RefSeq Acc Id: XM_038640956   ⟹   XP_038496884
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02711,628,882 - 11,643,802 (+)NCBI
RefSeq Acc Id: XM_038640957   ⟹   XP_038496885
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.02711,628,883 - 11,643,802 (+)NCBI
RefSeq Acc Id: XM_534835   ⟹   XP_534835
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12711,590,153 - 11,605,079 (+)NCBI
Dog10K_Boxer_Tasha2734,698,316 - 34,713,223 (-)NCBI
Sequence:
RefSeq Acc Id: XP_534835   ⟸   XM_534835
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RPR2 (UniProtKB/TrEMBL),   A0A8C0QYV2 (UniProtKB/TrEMBL),   A0A8I3Q3S8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013963995   ⟸   XM_014108520
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSCAFP00000038540   ⟸   ENSCAFT00000049381
RefSeq Acc Id: XP_038369107   ⟸   XM_038513179
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038369106   ⟸   XM_038513178
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038369108   ⟸   XM_038513180
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038496884   ⟸   XM_038640956
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038496883   ⟸   XM_038640955
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038496885   ⟸   XM_038640957
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038294421   ⟸   XM_038438493
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038294420   ⟸   XM_038438492
- Peptide Label: isoform X1
- UniProtKB: A0A8C0RPR2 (UniProtKB/TrEMBL),   A0A8C0QYV2 (UniProtKB/TrEMBL),   A0A8I3Q3S8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038294422   ⟸   XM_038438494
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038315926   ⟸   XM_038459998
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038433302   ⟸   XM_038577374
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038433303   ⟸   XM_038577375
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038433301   ⟸   XM_038577373
- Peptide Label: isoform X1
- UniProtKB: A0A8C0QYV2 (UniProtKB/TrEMBL),   A0A8C0RPR2 (UniProtKB/TrEMBL),   A0A8I3Q3S8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845042266   ⟸   ENSCAFT00845053780
Protein Domains
CCHC-type   RRM

Promoters
RGD ID:13688136
Promoter ID:EPDNEW_C6204
Type:initiation region
Name:ZCRB1_1
Description:zinc finger CCHC-type and RNA binding motif containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12711,590,193 - 11,590,253EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000030751 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030020652 UniProtKB/TrEMBL
  ENSCAFG00040022686 UniProtKB/TrEMBL
  ENSCAFG00845030305 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000049381.3 UniProtKB/TrEMBL
  ENSCAFT00030037920.1 UniProtKB/TrEMBL
  ENSCAFT00040042123.1 UniProtKB/TrEMBL
  ENSCAFT00845053780 ENTREZGENE
  ENSCAFT00845053780.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
  Zinc finger, CCHC-type UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  RRM_dom_euk UniProtKB/TrEMBL
  ZCRB1 UniProtKB/TrEMBL
  ZCRB1_RRM UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
  Znf_CCHC_sf UniProtKB/TrEMBL
NCBI Gene ZCRB1 ENTREZGENE
PANTHER PTHR46259 UniProtKB/TrEMBL
  ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
Pfam RRM_1 UniProtKB/TrEMBL
  zf-CCHC UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
  ZF_CCHC UniProtKB/TrEMBL
SMART RRM UniProtKB/TrEMBL
  RRM_1 UniProtKB/TrEMBL
  ZnF_C2HC UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/TrEMBL
  SSF57756 UniProtKB/TrEMBL
UniProt A0A8C0QYV2 ENTREZGENE
  A0A8C0RPR2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3Q3S8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:48574 ENTREZGENE