MIR320 (microRNA mir-320) - Rat Genome Database

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Gene: MIR320 (microRNA mir-320) Canis lupus familiaris
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Symbol: MIR320 (Ensembl: MIR320A)
Name: microRNA mir-320 (Ensembl:microRNA 320a)
RGD ID: 12107206
Description: microRNAs (miRNAs) are short (20-24 nt) non-coding RNAs that are involved in post-transcriptional regulation of gene expression in multicellular organisms by affecting both the stability and translation of mRNAs. miRNAs are transcribed by RNA polymerase II as part of capped and polyadenylated primary transcripts (pri-miRNAs) that can be either protein-coding or non-coding. The primary transcript is cleaved by the Drosha ribonuclease III enzyme to produce an approximately 70-nt stem-loop precursor miRNA (pre-miRNA), which is further cleaved by the cytoplasmic Dicer ribonuclease to generate the mature miRNA and antisense miRNA star (miRNA*) products. The mature miRNA is incorporated into a RNA-induced silencing complex (RISC), which recognizes target mRNAs through imperfect base pairing with the miRNA and most commonly results in translational inhibition or destabilization of the target mRNA. The RefSeq represents the predicted microRNA stem-loop. [provided by RefSeq, Sep 2009]
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: cfa-mir-320; microRNA 320
RGD Orthologs
Human
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12535,016,676 - 35,016,729 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2535,016,666 - 35,016,743 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2535,606,399 - 35,606,452 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02535,228,151 - 35,228,204 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2535,228,141 - 35,228,218 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12535,173,630 - 35,173,683 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02535,028,166 - 35,028,219 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02535,183,664 - 35,183,717 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
RISC complex  (IEA)

References
Additional References at PubMed
PMID:16381832   PMID:18392026  


Genomics

Comparative Map Data
MIR320
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12535,016,676 - 35,016,729 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2535,016,666 - 35,016,743 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2535,606,399 - 35,606,452 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02535,228,151 - 35,228,204 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2535,228,141 - 35,228,218 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12535,173,630 - 35,173,683 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02535,028,166 - 35,028,219 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02535,183,664 - 35,183,717 (+)NCBIUU_Cfam_GSD_1.0
MIR320E
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381946,709,282 - 46,709,354 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1946,709,293 - 46,709,345 (-)EnsemblGRCh38hg38GRCh38
GRCh371947,212,539 - 47,212,611 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera1944,016,079 - 44,016,131 (-)NCBICelera
Cytogenetic Map19q13.32ENTREZGENE
HuRef1943,637,478 - 43,637,530 (-)NCBIHuRef
CHM1_11947,214,456 - 47,214,508 (-)NCBICHM1_1
T2T-CHM13v2.01949,534,864 - 49,534,936 (-)NCBIT2T-CHM13v2.0
MIR320
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl146,520,901 - 6,520,980 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1146,520,901 - 6,520,980 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2146,954,934 - 6,955,013 (-)NCBISscrofa10.2Sscrofa10.2susScr3


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
1 4 5 3 2 1 2 1 6 3 1 3 1

Sequence


Ensembl Acc Id: ENSCAFT00000032547
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl2535,016,666 - 35,016,743 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845044211
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl2535,228,141 - 35,228,218 (+)Ensembl
RefSeq Acc Id: NR_049291
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.12535,016,676 - 35,016,729 (+)NCBI
Dog10K_Boxer_Tasha2535,606,399 - 35,606,452 (+)NCBI
ROS_Cfam_1.02535,228,151 - 35,228,204 (+)NCBI
UMICH_Zoey_3.12535,173,630 - 35,173,683 (+)NCBI
UNSW_CanFamBas_1.02535,028,166 - 35,028,219 (+)NCBI
UU_Cfam_GSD_1.02535,183,664 - 35,183,717 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000020440 Ensembl
  ENSCAFG00845025049 Ensembl, ENTREZGENE
Ensembl Transcript ENSCAFT00845044211 ENTREZGENE
miRBase MI0008063 ENTREZGENE
NCBI Gene MIR320 ENTREZGENE
RNAcentral URS00003CF1AD RNACentral
  URS00007E374E RNACentral
  URS0000CC0512 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-02 MIR320  microRNA mir-320    microRNA 320  Symbol and/or name change 5135510 APPROVED