LOC606860 (cytochrome c oxidase subunit 6C) - Rat Genome Database

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Gene: LOC606860 (cytochrome c oxidase subunit 6C) Canis lupus familiaris
Analyze
Symbol: LOC606860
Name: cytochrome c oxidase subunit 6C
RGD ID: 12104486
Description: INVOLVED IN mitochondrial electron transport, cytochrome c to oxygen (inferred); oxidative phosphorylation (inferred); FOUND IN mitochondrial inner membrane (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: uncharacterized LOC606860
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1131,835,897 - 1,852,413 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha131,831,452 - 1,847,980 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0131,989,016 - 2,005,545 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1131,831,172 - 1,847,672 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0131,944,417 - 1,960,751 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0131,945,889 - 1,962,420 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Variants

.
Variants in LOC606860
141 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


RefSeq Acc Id: XM_038619066   ⟹   XP_038474994
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0131,944,417 - 1,960,751 (-)NCBI
RefSeq Acc Id: XM_038619067   ⟹   XP_038474995
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0131,944,417 - 1,960,732 (-)NCBI
RefSeq Acc Id: XR_001317487
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1131,835,897 - 1,852,413 (-)NCBI
Dog10K_Boxer_Tasha131,831,452 - 1,847,980 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002632294
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1131,835,897 - 1,852,216 (-)NCBI
Dog10K_Boxer_Tasha131,831,452 - 1,847,782 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005334692
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1131,831,172 - 1,847,672 (-)NCBI
RefSeq Acc Id: XR_005334693
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1131,831,172 - 1,847,474 (-)NCBI
RefSeq Acc Id: XR_005368418
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0131,945,889 - 1,962,420 (-)NCBI
RefSeq Acc Id: XR_005368419
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0131,945,889 - 1,962,222 (-)NCBI
RefSeq Acc Id: XR_005436191
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0131,989,016 - 2,005,545 (-)NCBI
RefSeq Acc Id: XR_005436192
Type: NON-CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0131,989,016 - 2,005,347 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038474994 (Get FASTA)   NCBI Sequence Viewer  
  XP_038474995 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00845008282.1
  ENSCAFP00845036650.1
RefSeq Acc Id: XP_038474994   ⟸   XM_038619066
RefSeq Acc Id: XP_038474995   ⟸   XM_038619067


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00845006004 UniProtKB/TrEMBL
  ENSCAFG00845026489 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00845010629.1 UniProtKB/TrEMBL
  ENSCAFT00845046698 ENTREZGENE
  ENSCAFT00845046698.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.93.10 UniProtKB/TrEMBL
InterPro Cytochrome_c_oxidase_6c UniProtKB/TrEMBL
  Cytochrome_c_oxidase_VIc/VIIs UniProtKB/TrEMBL
  Cytochrome_c_oxidase_VIc_sf UniProtKB/TrEMBL
NCBI Gene LOC606860 ENTREZGENE
PANTHER CYTOCHROME C OXIDASE SUBUNIT 6C UniProtKB/TrEMBL
  CYTOCHROME C OXIDASE SUBUNIT 6C UniProtKB/TrEMBL
Pfam COX6C UniProtKB/TrEMBL
Superfamily-SCOP SSF81415 UniProtKB/TrEMBL
UniProt F1PKU9_CANLF UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC606860  cytochrome c oxidase subunit 6C  LOC606860  uncharacterized LOC606860  Symbol and/or name change 5135510 APPROVED