OXER1 (oxoeicosanoid receptor 1) - Rat Genome Database

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Gene: OXER1 (oxoeicosanoid receptor 1) Canis lupus familiaris
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Symbol: OXER1
Name: oxoeicosanoid receptor 1
RGD ID: 12103990
Description: ENCODES a protein that exhibits 5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding (ortholog); 5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding (ortholog); 5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid binding (ortholog); INVOLVED IN adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway (ortholog); ASSOCIATED WITH Lynch syndrome (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11045,363,740 - 45,367,562 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1045,364,284 - 45,365,474 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.01046,240,285 - 46,242,390 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1046,240,435 - 46,241,625 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11045,949,677 - 45,951,782 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01046,238,003 - 46,240,108 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01046,422,193 - 46,424,298 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
OXER1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11045,363,740 - 45,367,562 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1045,364,284 - 45,365,474 (-)EnsemblCanFam3.1canFam3CanFam3.1
ROS_Cfam_1.01046,240,285 - 46,242,390 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1046,240,435 - 46,241,625 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11045,949,677 - 45,951,782 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01046,238,003 - 46,240,108 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01046,422,193 - 46,424,298 (-)NCBIUU_Cfam_GSD_1.0
OXER1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38242,762,499 - 42,764,135 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl242,762,499 - 42,764,135 (-)EnsemblGRCh38hg38GRCh38
GRCh37242,989,639 - 42,991,275 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36242,843,143 - 42,844,905 (-)NCBINCBI36Build 36hg18NCBI36
Build 34242,901,289 - 42,903,052NCBI
Celera242,828,890 - 42,830,652 (-)NCBICelera
Cytogenetic Map2p21NCBI
HuRef242,723,895 - 42,725,657 (-)NCBIHuRef
CHM1_1242,918,976 - 42,920,738 (-)NCBICHM1_1
T2T-CHM13v2.0242,767,768 - 42,769,404 (-)NCBIT2T-CHM13v2.0
OXER1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21283,652,518 - 83,658,684 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A83,657,864 - 83,659,557 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A42,852,616 - 42,855,586 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A43,699,866 - 43,702,889 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A43,700,292 - 43,701,563 (-)Ensemblpanpan1.1panPan2
OXER1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11464,486,130 - 64,490,036 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1464,488,355 - 64,489,626 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604547,416,894 - 47,418,668 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in OXER1
37 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 4 4 19 19 16 6 6 6 5 25 15 11 7 10

Sequence


Ensembl Acc Id: ENSCAFT00000003830   ⟹   ENSCAFP00000003543
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1045,364,284 - 45,365,474 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845044095   ⟹   ENSCAFP00845034551
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1046,240,435 - 46,241,625 (-)Ensembl
RefSeq Acc Id: XM_038489639   ⟹   XP_038345567
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11045,949,677 - 45,951,782 (-)NCBI
RefSeq Acc Id: XM_038549535   ⟹   XP_038405463
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01046,422,193 - 46,424,298 (-)NCBI
RefSeq Acc Id: XM_038613488   ⟹   XP_038469416
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01046,238,003 - 46,240,108 (-)NCBI
RefSeq Acc Id: XM_038678863   ⟹   XP_038534791
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01046,240,285 - 46,242,390 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038345567 (Get FASTA)   NCBI Sequence Viewer  
  XP_038405463 (Get FASTA)   NCBI Sequence Viewer  
  XP_038469416 (Get FASTA)   NCBI Sequence Viewer  
  XP_038534791 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00030024045.1
  ENSCAFP00845034551
  ENSCAFP00845034551.1
Ensembl Acc Id: ENSCAFP00000003543   ⟸   ENSCAFT00000003830
RefSeq Acc Id: XP_038345567   ⟸   XM_038489639
RefSeq Acc Id: XP_038469416   ⟸   XM_038613488
RefSeq Acc Id: XP_038534791   ⟸   XM_038678863
- UniProtKB: A0A8C0LIX9 (UniProtKB/TrEMBL),   A0A8C0NB86 (UniProtKB/TrEMBL),   A0A8I3PXC2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038405463   ⟸   XM_038549535
- UniProtKB: A0A8C0LIX9 (UniProtKB/TrEMBL),   A0A8C0NB86 (UniProtKB/TrEMBL),   A0A8I3PXC2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845034551   ⟸   ENSCAFT00845044095
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002433 Ensembl
  ENSCAFG00030014945 UniProtKB/TrEMBL
  ENSCAFG00845024990 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00030027556.1 UniProtKB/TrEMBL
  ENSCAFT00845044095 ENTREZGENE
  ENSCAFT00845044095.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  HCARs UniProtKB/TrEMBL
NCBI Gene OXER1 ENTREZGENE
PANTHER HYDROXYCARBOXYLIC ACID RECEPTOR 2 UniProtKB/TrEMBL
  OXOEICOSANOID RECEPTOR 1 UniProtKB/TrEMBL
Pfam 7tm_1 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0LIX9 ENTREZGENE
  A0A8C0NB86 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PXC2 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:44200 ENTREZGENE