SHISA3 (shisa family member 3) - Rat Genome Database

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Gene: SHISA3 (shisa family member 3) Canis lupus familiaris
Analyze
Symbol: SHISA3
Name: shisa family member 3
RGD ID: 12095803
Description: INVOLVED IN negative regulation of canonical Wnt signaling pathway (ortholog); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11339,358,206 - 39,360,723 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1339,358,607 - 39,359,730 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1339,333,616 - 39,338,124 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01339,847,323 - 39,851,823 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1339,846,741 - 39,851,805 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11339,535,571 - 39,540,095 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01339,648,613 - 39,653,152 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01340,113,373 - 40,117,919 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
SHISA3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11339,358,206 - 39,360,723 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1339,358,607 - 39,359,730 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1339,333,616 - 39,338,124 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01339,847,323 - 39,851,823 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1339,846,741 - 39,851,805 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11339,535,571 - 39,540,095 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01339,648,613 - 39,653,152 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01340,113,373 - 40,117,919 (+)NCBIUU_Cfam_GSD_1.0
SHISA3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38442,397,488 - 42,402,487 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl442,397,488 - 42,402,487 (+)EnsemblGRCh38hg38GRCh38
GRCh37442,399,505 - 42,404,504 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36442,094,613 - 42,099,261 (+)NCBINCBI36Build 36hg18NCBI36
Celera442,847,702 - 42,852,350 (+)NCBICelera
Cytogenetic Map4p13NCBI
HuRef441,721,064 - 41,725,712 (+)NCBIHuRef
CHM1_1442,400,127 - 42,404,775 (+)NCBICHM1_1
T2T-CHM13v2.0442,371,349 - 42,376,348 (+)NCBIT2T-CHM13v2.0
Shisa3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39567,765,226 - 67,771,330 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl567,765,225 - 67,780,895 (+)EnsemblGRCm39 Ensembl
GRCm38567,607,883 - 67,613,987 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl567,607,882 - 67,623,552 (+)EnsemblGRCm38mm10GRCm38
MGSCv37567,999,122 - 68,003,511 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36567,887,018 - 67,891,407 (+)NCBIMGSCv36mm8
Celera564,899,945 - 64,905,332 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map536.15NCBI
Shisa3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81440,917,563 - 40,922,135 (-)NCBIGRCr8
mRatBN7.21440,563,672 - 40,568,244 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1440,563,673 - 40,568,244 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1440,910,502 - 40,915,074 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01442,210,574 - 42,215,146 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01440,691,360 - 40,695,932 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01442,216,653 - 42,221,225 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1442,216,654 - 42,221,225 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01442,013,406 - 42,017,978 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41443,175,486 - 43,180,058 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1439,721,342 - 39,725,914 (-)NCBICelera
Cytogenetic Map14p11NCBI
Shisa3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554435,365,791 - 5,372,108 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554435,367,306 - 5,372,091 (-)NCBIChiLan1.0ChiLan1.0
SHISA3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2342,580,469 - 42,585,747 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1442,771,347 - 42,776,625 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0436,718,938 - 36,723,924 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1442,566,944 - 42,572,098 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl442,567,291 - 42,572,098 (+)Ensemblpanpan1.1panPan2
Shisa3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528536,741,476 - 36,745,878 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364829,551,933 - 9,556,794 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364829,551,933 - 9,556,763 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SHISA3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl833,374,265 - 33,378,951 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1833,373,633 - 33,379,039 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2835,095,667 - 35,096,819 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SHISA3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1277,939,248 - 7,946,897 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl277,940,285 - 7,943,677 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604754,236,396 - 54,241,498 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Shisa3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476124,511,759 - 24,519,251 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476124,514,251 - 24,519,253 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SHISA3
71 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 4 23 22 16 6 6 6 6 32 21 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000002835   ⟹   ENSCAFP00000002629
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1339,358,607 - 39,359,730 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845026125   ⟹   ENSCAFP00845020597
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1339,846,741 - 39,851,805 (+)Ensembl
RefSeq Acc Id: XM_038430762   ⟹   XP_038286690
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1339,333,616 - 39,338,124 (+)NCBI
RefSeq Acc Id: XM_038494080   ⟹   XP_038350008
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11339,535,571 - 39,540,095 (+)NCBI
RefSeq Acc Id: XM_038555958   ⟹   XP_038411886
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01340,113,373 - 40,117,919 (+)NCBI
RefSeq Acc Id: XM_038619888   ⟹   XP_038475816
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01339,648,613 - 39,653,152 (+)NCBI
RefSeq Acc Id: XM_038684604   ⟹   XP_038540532
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01339,847,323 - 39,851,823 (+)NCBI
Ensembl Acc Id: ENSCAFP00000002629   ⟸   ENSCAFT00000002835
RefSeq Acc Id: XP_038350008   ⟸   XM_038494080
RefSeq Acc Id: XP_038475816   ⟸   XM_038619888
RefSeq Acc Id: XP_038540532   ⟸   XM_038684604
- UniProtKB: A0A8C0N5Z5 (UniProtKB/TrEMBL),   A0A8C0R5L0 (UniProtKB/TrEMBL),   A0A8I3NK59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038286690   ⟸   XM_038430762
- UniProtKB: A0A8C0N5Z5 (UniProtKB/TrEMBL),   A0A8C0R5L0 (UniProtKB/TrEMBL),   A0A8I3NK59 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038411886   ⟸   XM_038555958
- UniProtKB: A0A8C0N5Z5 (UniProtKB/TrEMBL),   A0A8C0R5L0 (UniProtKB/TrEMBL),   A0A8I3NK59 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845020597   ⟸   ENSCAFT00845026125
Protein Domains
Shisa N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000001804 Ensembl
  ENSCAFG00000059385 UniProtKB/TrEMBL
  ENSCAFG00030011099 UniProtKB/TrEMBL
  ENSCAFG00845014597 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000100475.1 UniProtKB/TrEMBL
  ENSCAFT00030020541.1 UniProtKB/TrEMBL
  ENSCAFT00845026125 ENTREZGENE
  ENSCAFT00845026125.1 UniProtKB/TrEMBL
InterPro Shisa UniProtKB/TrEMBL
  Shisa_N UniProtKB/TrEMBL
NCBI Gene SHISA3 ENTREZGENE
PANTHER PROTEIN SHISA-3 HOMOLOG UniProtKB/TrEMBL
  PTHR31395 UniProtKB/TrEMBL
Pfam Shisa UniProtKB/TrEMBL
UniProt A0A8C0N5Z5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0R5L0 ENTREZGENE
  A0A8I3NK59 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:111719 ENTREZGENE