OCM (oncomodulin) - Rat Genome Database

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Gene: OCM (oncomodulin) Canis lupus familiaris
Analyze
Symbol: OCM (Ensembl: OCM2)
Name: oncomodulin
RGD ID: 12080330
Description: ENCODES a protein that exhibits calcium ion binding (inferred); metal ion binding (inferred); ASSOCIATED WITH pleomorphic xanthoastrocytoma (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: OCM2; oncomodulin 2; oncomodulin-like; putative oncomodulin-2
RGD Orthologs
Human
Bonobo
Squirrel
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1611,305,801 - 11,309,969 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl611,305,794 - 11,309,541 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha612,931,581 - 12,935,322 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0611,305,682 - 11,309,496 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl611,304,886 - 11,309,496 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1611,182,898 - 11,186,642 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,154,581 - 11,158,335 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0611,388,461 - 11,392,236 (+)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
OCM
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1611,305,801 - 11,309,969 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl611,305,794 - 11,309,541 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha612,931,581 - 12,935,322 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0611,305,682 - 11,309,496 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl611,304,886 - 11,309,496 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1611,182,898 - 11,186,642 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,154,581 - 11,158,335 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0611,388,461 - 11,392,236 (+)NCBIUU_Cfam_GSD_1.0
OCM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38797,984,687 - 97,990,196 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl797,984,687 - 97,991,169 (-)EnsemblGRCh38hg38GRCh38
GRCh37797,613,999 - 97,619,508 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36797,451,948 - 97,457,352 (-)NCBINCBI36Build 36hg18NCBI36
Celera792,307,953 - 92,313,368 (-)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef792,214,818 - 92,220,241 (-)NCBIHuRef
CHM1_1797,544,017 - 97,549,421 (-)NCBICHM1_1
T2T-CHM13v2.0799,214,784 - 99,220,320 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2796,938,878 - 96,944,293 (-)NCBI
OCM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26115,827,628 - 115,887,789 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17164,092,377 - 164,124,036 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v076,534,896 - 6,540,900 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
Ocm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344139,383,953 - 139,388,348 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936750556,912 - 561,291 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0

Variants

.
Variants in OCM
26 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
2 2 2 14 11 4 5 4 15 13 5 9 4

Sequence


Ensembl Acc Id: ENSCAFT00000024500   ⟹   ENSCAFP00000022743
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl611,305,794 - 11,309,541 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845016961   ⟹   ENSCAFP00845013207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl611,304,886 - 11,309,496 (+)Ensembl
RefSeq Acc Id: XM_038478216   ⟹   XP_038334144
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1611,182,898 - 11,186,642 (+)NCBI
RefSeq Acc Id: XM_038539466   ⟹   XP_038395394
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0611,388,461 - 11,392,236 (+)NCBI
RefSeq Acc Id: XM_038540011   ⟹   XP_038395939
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha612,931,581 - 12,935,322 (+)NCBI
RefSeq Acc Id: XM_038603549   ⟹   XP_038459477
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0611,154,581 - 11,158,335 (+)NCBI
RefSeq Acc Id: XM_038668254   ⟹   XP_038524182
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0611,305,682 - 11,309,496 (+)NCBI
Ensembl Acc Id: ENSCAFP00000022743   ⟸   ENSCAFT00000024500
RefSeq Acc Id: XP_038334144   ⟸   XM_038478216
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038459477   ⟸   XM_038603549
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038524182   ⟸   XM_038668254
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SGC1 (UniProtKB/TrEMBL),   A0A8I3N1U7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395939   ⟸   XM_038540011
- Peptide Label: isoform X1
- UniProtKB: A0A8C0SGC1 (UniProtKB/TrEMBL),   A0A8I3N1U7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038395394   ⟸   XM_038539466
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCAFP00845013207   ⟸   ENSCAFT00845016961
Protein Domains
EF-hand


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000015446 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030019154 UniProtKB/TrEMBL
  ENSCAFG00040012760 UniProtKB/TrEMBL
  ENSCAFG00845009625 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000024500.4 UniProtKB/TrEMBL
  ENSCAFT00030035237.1 UniProtKB/TrEMBL
  ENSCAFT00040023532.1 UniProtKB/TrEMBL
  ENSCAFT00845016961 ENTREZGENE
  ENSCAFT00845016961.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  EF_Hand_1_Ca_BS UniProtKB/TrEMBL
  EF_hand_dom UniProtKB/TrEMBL
  Parvalbumin UniProtKB/TrEMBL
NCBI Gene OCM2 ENTREZGENE
PANTHER ONCOMODULIN-2-RELATED UniProtKB/TrEMBL
  PTHR11653 UniProtKB/TrEMBL
Pfam EF-hand_7 UniProtKB/TrEMBL
PRINTS PARVALBUMIN UniProtKB/TrEMBL
PROSITE EF_HAND_1 UniProtKB/TrEMBL
  EF_HAND_2 UniProtKB/TrEMBL
SMART EFh UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A8C0SGC1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N1U7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:99829 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-05-05 OCM  oncomodulin  OCM2  oncomodulin 2  Symbol and/or name change 5135510 APPROVED