LOC102152884 (small nuclear ribonucleoprotein Sm D3-like) - Rat Genome Database

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Gene: LOC102152884 (small nuclear ribonucleoprotein Sm D3-like) Canis lupus familiaris
Analyze
No known orthologs.
Symbol: LOC102152884
Name: small nuclear ribonucleoprotein Sm D3-like
RGD ID: 12073893
Description: ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN mRNA processing (inferred); RNA processing (inferred); RNA splicing (inferred); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small nuclear ribonucleoprotein Sm D3 pseudogene
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
NCBI Annotation Information: Annotation category: not annotated on reference assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X60,094,850 - 60,095,507 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX51,108,106 - 51,108,756 (+)NCBIDog10K_Boxer_Tasha
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
RNA binding  (IEA)

References

Genomics

Variants

.
Variants in LOC102152884
20 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 21 20 16 6 6 6 6 33 22 10 12 10

Sequence


RefSeq Acc Id: XM_038464239   ⟹   XP_038320167
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_TashaX51,108,106 - 51,108,756 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038320167 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000042139.1
  ENSCAFP00040026478.1
RefSeq Acc Id: XP_038320167   ⟸   XM_038464239
- UniProtKB: A0A8C0YZX0 (UniProtKB/TrEMBL),   A0A8P0NSU9 (UniProtKB/TrEMBL)
Protein Domains
Sm


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000017258 UniProtKB/TrEMBL
  ENSCAFG00040016508 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000027332.4 UniProtKB/TrEMBL
  ENSCAFT00040030469.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  LSm4/Sm_D1/D3 UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  SmD3 UniProtKB/TrEMBL
NCBI Gene LOC102152884 ENTREZGENE
PANTHER PTHR23338 UniProtKB/TrEMBL
  SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3 UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PROSITE PS52002 UniProtKB/TrEMBL
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt A0A8C0YZX0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0NSU9 ENTREZGENE
UniProt Secondary A0A8P0NSU9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-12 LOC102152884  small nuclear ribonucleoprotein Sm D3-like  LOC102152884  small nuclear ribonucleoprotein Sm D3 pseudogene  Symbol and/or name change 5135510 APPROVED