TMCC3 (transmembrane and coiled-coil domain family 3) - Rat Genome Database

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Gene: TMCC3 (transmembrane and coiled-coil domain family 3) Canis lupus familiaris
Analyze
Symbol: TMCC3
Name: transmembrane and coiled-coil domain family 3
RGD ID: 12066389
Description: ENCODES a protein that exhibits 14-3-3 protein binding (inferred); identical protein binding (inferred); ASSOCIATED WITH myoepithelioma (ortholog); FOUND IN endoplasmic reticulum (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transmembrane and coiled coil domain protein 3; transmembrane and coiled-coil domain protein 3; transmembrane and coiled-coil domains protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11534,624,804 - 34,850,226 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1534,629,079 - 34,638,550 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1535,010,916 - 35,272,624 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01535,288,245 - 35,549,907 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1535,290,221 - 35,359,506 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11534,561,751 - 34,823,350 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01534,651,390 - 34,913,699 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01534,920,090 - 35,182,019 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TMCC3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11534,624,804 - 34,850,226 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1534,629,079 - 34,638,550 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1535,010,916 - 35,272,624 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01535,288,245 - 35,549,907 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1535,290,221 - 35,359,506 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11534,561,751 - 34,823,350 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01534,651,390 - 34,913,699 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01534,920,090 - 35,182,019 (-)NCBIUU_Cfam_GSD_1.0
TMCC3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381294,567,122 - 94,650,557 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1294,567,122 - 94,650,557 (-)EnsemblGRCh38hg38GRCh38
GRCh371294,960,898 - 95,044,333 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361293,486,168 - 93,568,455 (-)NCBINCBI36Build 36hg18NCBI36
Build 341293,464,516 - 93,546,792NCBI
Celera1294,632,124 - 94,715,494 (-)NCBICelera
Cytogenetic Map12q22NCBI
HuRef1292,028,002 - 92,111,318 (-)NCBIHuRef
CHM1_11294,925,848 - 95,009,358 (-)NCBICHM1_1
T2T-CHM13v2.01294,547,898 - 94,631,383 (-)NCBIT2T-CHM13v2.0
Tmcc3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391094,147,544 - 94,426,816 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1094,147,811 - 94,426,818 (+)EnsemblGRCm39 Ensembl
GRCm381094,311,682 - 94,590,954 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1094,311,949 - 94,590,956 (+)EnsemblGRCm38mm10GRCm38
MGSCv371093,977,602 - 94,053,699 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361093,944,678 - 94,020,753 (+)NCBIMGSCv36mm8
Celera1096,487,680 - 96,563,644 (+)NCBICelera
Cytogenetic Map10C2NCBI
cM Map1048.88NCBI
Tmcc3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8730,781,452 - 31,058,888 (+)NCBIGRCr8
mRatBN7.2728,893,972 - 29,171,935 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl728,893,967 - 29,171,926 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx731,098,421 - 31,170,349 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0733,261,070 - 33,333,032 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0733,031,565 - 33,103,518 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0735,266,953 - 35,543,770 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl735,309,265 - 35,543,759 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0735,333,406 - 35,608,386 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4731,691,945 - 31,764,354 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1731,712,381 - 31,780,818 (+)NCBI
Celera726,189,445 - 26,261,477 (+)NCBICelera
Cytogenetic Map7q13NCBI
Tmcc3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540531,262,019 - 31,268,612 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540531,258,087 - 31,484,029 (-)NCBIChiLan1.0ChiLan1.0
TMCC3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210102,631,360 - 102,940,098 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112102,627,724 - 102,936,490 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01292,150,075 - 92,233,394 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11295,508,740 - 95,556,182 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1295,508,740 - 95,556,182 (-)Ensemblpanpan1.1panPan2
Tmcc3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494525,137,690 - 25,349,231 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650710,886,202 - 11,095,457 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650710,886,187 - 10,905,945 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMCC3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl588,438,365 - 88,682,319 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1588,409,560 - 88,682,328 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2593,038,097 - 93,105,107 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TMCC3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11189,964,934 - 90,216,835 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1189,969,260 - 89,979,591 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037154,895,315 - 155,203,563 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmcc3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475012,338,033 - 12,400,385 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475012,186,314 - 12,404,661 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMCC3
2793 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005629230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005629231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005629232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022403323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022403324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022403325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452150 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038452154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038496273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038496275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038496276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038496277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038496278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038496279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038496280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038496281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558664 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038558666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622568 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622569 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622571 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038622576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038688246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038688247 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038688248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038688249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038688250 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038688251 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038688252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038688253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HQ826917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000010061   ⟹   ENSCAFP00000009333
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1534,629,079 - 34,638,550 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845039528   ⟹   ENSCAFP00845030979
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1535,290,221 - 35,359,506 (-)Ensembl
RefSeq Acc Id: XM_005629231   ⟹   XP_005629288
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11534,624,804 - 34,663,913 (-)NCBI
Dog10K_Boxer_Tasha1535,010,916 - 35,050,123 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005629232   ⟹   XP_005629289
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11534,624,804 - 34,694,868 (-)NCBI
Dog10K_Boxer_Tasha1535,010,916 - 35,080,999 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022403324   ⟹   XP_022259032
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11534,624,804 - 34,850,226 (-)NCBI
Dog10K_Boxer_Tasha1535,010,916 - 35,225,009 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038452150   ⟹   XP_038308078
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1535,010,916 - 35,081,924 (-)NCBI
RefSeq Acc Id: XM_038452151   ⟹   XP_038308079
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1535,010,916 - 35,149,788 (-)NCBI
RefSeq Acc Id: XM_038452152   ⟹   XP_038308080
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1535,010,916 - 35,272,624 (-)NCBI
RefSeq Acc Id: XM_038452153   ⟹   XP_038308081
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1535,010,916 - 35,050,020 (-)NCBI
RefSeq Acc Id: XM_038452154   ⟹   XP_038308082
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha1535,010,916 - 35,028,963 (-)NCBI
RefSeq Acc Id: XM_038496273   ⟹   XP_038352201
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11534,561,751 - 34,632,750 (-)NCBI
RefSeq Acc Id: XM_038496275   ⟹   XP_038352203
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11534,561,751 - 34,823,350 (-)NCBI
RefSeq Acc Id: XM_038496276   ⟹   XP_038352204
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11534,561,751 - 34,600,995 (-)NCBI
RefSeq Acc Id: XM_038496277   ⟹   XP_038352205
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11534,561,751 - 34,700,405 (-)NCBI
RefSeq Acc Id: XM_038496278   ⟹   XP_038352206
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11534,561,751 - 34,600,891 (-)NCBI
RefSeq Acc Id: XM_038496279   ⟹   XP_038352207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11534,561,751 - 34,579,797 (-)NCBI
RefSeq Acc Id: XM_038496280   ⟹   XP_038352208
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11534,561,751 - 34,775,624 (-)NCBI
RefSeq Acc Id: XM_038496281   ⟹   XP_038352209
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11534,561,751 - 34,631,775 (-)NCBI
RefSeq Acc Id: XM_038558659   ⟹   XP_038414587
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01534,920,090 - 34,991,144 (-)NCBI
RefSeq Acc Id: XM_038558660   ⟹   XP_038414588
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01534,920,090 - 35,059,026 (-)NCBI
RefSeq Acc Id: XM_038558661   ⟹   XP_038414589
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01534,920,090 - 35,182,019 (-)NCBI
RefSeq Acc Id: XM_038558662   ⟹   XP_038414590
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01534,920,090 - 34,959,309 (-)NCBI
RefSeq Acc Id: XM_038558663   ⟹   XP_038414591
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01534,920,090 - 34,959,205 (-)NCBI
RefSeq Acc Id: XM_038558664   ⟹   XP_038414592
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01534,920,090 - 34,938,140 (-)NCBI
RefSeq Acc Id: XM_038558665   ⟹   XP_038414593
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01534,920,090 - 35,134,270 (-)NCBI
RefSeq Acc Id: XM_038558666   ⟹   XP_038414594
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01534,920,090 - 34,990,214 (-)NCBI
RefSeq Acc Id: XM_038622567   ⟹   XP_038478495
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01534,651,390 - 34,722,431 (-)NCBI
RefSeq Acc Id: XM_038622568   ⟹   XP_038478496
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01534,651,390 - 34,866,009 (-)NCBI
RefSeq Acc Id: XM_038622569   ⟹   XP_038478497
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01534,651,390 - 34,790,437 (-)NCBI
RefSeq Acc Id: XM_038622571   ⟹   XP_038478499
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01534,651,390 - 34,913,699 (-)NCBI
RefSeq Acc Id: XM_038622572   ⟹   XP_038478500
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01534,651,390 - 34,690,623 (-)NCBI
RefSeq Acc Id: XM_038622573   ⟹   XP_038478501
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01534,651,390 - 34,690,520 (-)NCBI
RefSeq Acc Id: XM_038622574   ⟹   XP_038478502
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01534,651,390 - 34,669,432 (-)NCBI
RefSeq Acc Id: XM_038622575   ⟹   XP_038478503
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01534,651,390 - 34,866,013 (-)NCBI
RefSeq Acc Id: XM_038622576   ⟹   XP_038478504
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01534,651,390 - 34,721,502 (-)NCBI
RefSeq Acc Id: XM_038688246   ⟹   XP_038544174
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01535,288,245 - 35,359,264 (-)NCBI
RefSeq Acc Id: XM_038688247   ⟹   XP_038544175
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01535,288,245 - 35,549,907 (-)NCBI
RefSeq Acc Id: XM_038688248   ⟹   XP_038544176
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01535,288,245 - 35,327,504 (-)NCBI
RefSeq Acc Id: XM_038688249   ⟹   XP_038544177
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01535,288,245 - 35,426,935 (-)NCBI
RefSeq Acc Id: XM_038688250   ⟹   XP_038544178
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01535,288,245 - 35,327,400 (-)NCBI
RefSeq Acc Id: XM_038688251   ⟹   XP_038544179
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01535,288,245 - 35,306,295 (-)NCBI
RefSeq Acc Id: XM_038688252   ⟹   XP_038544180
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01535,288,245 - 35,502,181 (-)NCBI
RefSeq Acc Id: XM_038688253   ⟹   XP_038544181
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01535,288,245 - 35,358,289 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005629288 (Get FASTA)   NCBI Sequence Viewer  
  XP_005629289 (Get FASTA)   NCBI Sequence Viewer  
  XP_022259032 (Get FASTA)   NCBI Sequence Viewer  
  XP_038308078 (Get FASTA)   NCBI Sequence Viewer  
  XP_038308079 (Get FASTA)   NCBI Sequence Viewer  
  XP_038308080 (Get FASTA)   NCBI Sequence Viewer  
  XP_038308081 (Get FASTA)   NCBI Sequence Viewer  
  XP_038308082 (Get FASTA)   NCBI Sequence Viewer  
  XP_038352201 (Get FASTA)   NCBI Sequence Viewer  
  XP_038352203 (Get FASTA)   NCBI Sequence Viewer  
  XP_038352204 (Get FASTA)   NCBI Sequence Viewer  
  XP_038352205 (Get FASTA)   NCBI Sequence Viewer  
  XP_038352206 (Get FASTA)   NCBI Sequence Viewer  
  XP_038352207 (Get FASTA)   NCBI Sequence Viewer  
  XP_038352208 (Get FASTA)   NCBI Sequence Viewer  
  XP_038352209 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414587 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414588 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414589 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414590 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414591 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414592 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414593 (Get FASTA)   NCBI Sequence Viewer  
  XP_038414594 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478495 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478496 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478497 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478499 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478500 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478501 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478502 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478503 (Get FASTA)   NCBI Sequence Viewer  
  XP_038478504 (Get FASTA)   NCBI Sequence Viewer  
  XP_038544174 (Get FASTA)   NCBI Sequence Viewer  
  XP_038544175 (Get FASTA)   NCBI Sequence Viewer  
  XP_038544176 (Get FASTA)   NCBI Sequence Viewer  
  XP_038544177 (Get FASTA)   NCBI Sequence Viewer  
  XP_038544178 (Get FASTA)   NCBI Sequence Viewer  
  XP_038544179 (Get FASTA)   NCBI Sequence Viewer  
  XP_038544180 (Get FASTA)   NCBI Sequence Viewer  
  XP_038544181 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein ADZ53870 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000009333.4
  ENSCAFP00030023357.1
  ENSCAFP00030023387.1
  ENSCAFP00040007519.1
  ENSCAFP00040007540.1
  ENSCAFP00845030979
  ENSCAFP00845030979.1
RefSeq Acc Id: XP_005629289   ⟸   XM_005629232
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005629288   ⟸   XM_005629231
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022259032   ⟸   XM_022403324
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000009333   ⟸   ENSCAFT00000010061
RefSeq Acc Id: XP_038352203   ⟸   XM_038496275
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038352208   ⟸   XM_038496280
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038352205   ⟸   XM_038496277
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038352201   ⟸   XM_038496273
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038352209   ⟸   XM_038496281
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038352204   ⟸   XM_038496276
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038352206   ⟸   XM_038496278
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038352207   ⟸   XM_038496279
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038478499   ⟸   XM_038622571
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038478503   ⟸   XM_038622575
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038478496   ⟸   XM_038622568
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038478497   ⟸   XM_038622569
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038478495   ⟸   XM_038622567
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038478504   ⟸   XM_038622576
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038478500   ⟸   XM_038622572
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038478501   ⟸   XM_038622573
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038478502   ⟸   XM_038622574
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038544175   ⟸   XM_038688247
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038544180   ⟸   XM_038688252
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038544177   ⟸   XM_038688249
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038544174   ⟸   XM_038688246
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Q7I9 (UniProtKB/TrEMBL),   A0A8C0LEP8 (UniProtKB/TrEMBL),   A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038544181   ⟸   XM_038688253
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038544176   ⟸   XM_038688248
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038544178   ⟸   XM_038688250
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038544179   ⟸   XM_038688251
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038308080   ⟸   XM_038452152
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038308079   ⟸   XM_038452151
- Peptide Label: isoform X6
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038308078   ⟸   XM_038452150
- Peptide Label: isoform X1
- UniProtKB: A0A8C0Q7I9 (UniProtKB/TrEMBL),   A0A8C0LEP8 (UniProtKB/TrEMBL),   A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038308081   ⟸   XM_038452153
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038308082   ⟸   XM_038452154
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414589   ⟸   XM_038558661
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414593   ⟸   XM_038558665
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414588   ⟸   XM_038558660
- Peptide Label: isoform X5
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414587   ⟸   XM_038558659
- Peptide Label: isoform X1
- UniProtKB: A0A8C0LEP8 (UniProtKB/TrEMBL),   A0A8C0NE76 (UniProtKB/TrEMBL),   A0A8C0Q7I9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414594   ⟸   XM_038558666
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414590   ⟸   XM_038558662
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414591   ⟸   XM_038558663
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038414592   ⟸   XM_038558664
- Peptide Label: isoform X3
- UniProtKB: A0A8C0NE76 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845030979   ⟸   ENSCAFT00845039528
Protein Domains
Reverse transcriptase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000006227 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030014487 UniProtKB/TrEMBL
  ENSCAFG00040004574 UniProtKB/TrEMBL
  ENSCAFG00845022396 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000010061.4 UniProtKB/TrEMBL
  ENSCAFT00030026753.1 UniProtKB/TrEMBL
  ENSCAFT00030026793.1 UniProtKB/TrEMBL
  ENSCAFT00040008655.1 UniProtKB/TrEMBL
  ENSCAFT00040008676.1 UniProtKB/TrEMBL
  ENSCAFT00845039528 ENTREZGENE
  ENSCAFT00845039528.1 UniProtKB/TrEMBL
Gene3D-CATH Endonuclease/exonuclease/phosphatase UniProtKB/TrEMBL
InterPro DNA/RNA_pol_sf UniProtKB/TrEMBL
  Endo/exonu/phosph_ase_sf UniProtKB/TrEMBL
  RT_dom UniProtKB/TrEMBL
  TEX28/TMCC UniProtKB/TrEMBL
NCBI Gene TMCC3 ENTREZGENE
PANTHER LINE-1 RETROTRANSPOSABLE ELEMENT ORF2 PROTEIN UniProtKB/TrEMBL
  PTHR17613 UniProtKB/TrEMBL
  REVERSE TRANSCRIPTASES UniProtKB/TrEMBL
  TRANSMEMBRANE AND COILED-COIL DOMAIN PROTEIN 3 UniProtKB/TrEMBL
Pfam RVT_1 UniProtKB/TrEMBL
  Tmemb_cc2 UniProtKB/TrEMBL
PROSITE RT_POL UniProtKB/TrEMBL
Superfamily-SCOP DNA/RNA polymerases UniProtKB/TrEMBL
  DNase I-like UniProtKB/TrEMBL
UniProt A0A8C0LEP8 ENTREZGENE
  A0A8C0NE76 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q2C8_CANLF UniProtKB/TrEMBL
  A0A8C0Q7I9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PG48_CANLF UniProtKB/TrEMBL
  A0A8P0SBM0_CANLF UniProtKB/TrEMBL
  F2Y8R6_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:47430 ENTREZGENE