BRAP (BRCA1 associated protein) - Rat Genome Database

Name: BRAP
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: BRAP (BRCA1 associated protein) Canis lupus familiaris

Analyze

Symbol:

BRAP

Name:

BRCA1 associated protein

RGD ID:

12050514

Description:

ENCODES a protein that exhibits identical protein binding (inferred); metal ion binding (inferred); nuclear localization sequence binding (inferred); INVOLVED IN MAPK cascade (ortholog); Ras protein signal transduction (ortholog); ASSOCIATED WITH myocardial infarction (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred); nuclear membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

BRCA1-associated protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BRAP (BRCA1 associated protein)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Brap (BRCA1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Brap (BRCA1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Brap (BRCA1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BRAP (BRCA1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Brap (BRCA1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BRAP (BRCA1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BRAP (BRCA1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Brap (BRCA1 associated protein)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	9,223,929 - 9,250,985 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	9,224,077 - 9,251,003 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	9,384,554 - 9,413,441 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	9,483,009 - 9,510,405 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	9,481,418 - 9,510,461 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	9,439,088 - 9,466,139 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	9,499,992 - 9,528,875 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	9,454,886 - 9,481,940 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

myocardial infarction (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

MAPK cascade (IEA,ISO)

negative regulation of signal transduction (IEA)

protein ubiquitination (IEA)

Ras protein signal transduction (IEA,ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

nuclear membrane (IEA)

nucleoplasm (IEA)

ubiquitin ligase complex (IEA)

Molecular Function

identical protein binding (IEA)

metal ion binding (IEA)

nuclear localization sequence binding (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

ubiquitin protein ligase activity (IEA)

ubiquitin-protein transferase activity (IEA)

zinc ion binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

BRAP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	9,223,929 - 9,250,985 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	9,224,077 - 9,251,003 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	9,384,554 - 9,413,441 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	9,483,009 - 9,510,405 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	9,481,418 - 9,510,461 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	9,439,088 - 9,466,139 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	9,499,992 - 9,528,875 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	9,454,886 - 9,481,940 (-)	NCBI		UU_Cfam_GSD_1.0

BRAP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	111,642,146 - 111,685,956 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	111,642,146 - 111,685,956 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	112,079,950 - 112,123,760 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	110,566,280 - 110,608,122 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	110,544,615 - 110,586,459	NCBI
Celera	12	111,705,482 - 111,749,255 (-)	NCBI		Celera
Cytogenetic Map	12	q24.12	NCBI
HuRef	12	109,093,402 - 109,137,289 (-)	NCBI		HuRef
CHM1_1	12	112,047,902 - 112,091,753 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	111,619,068 - 111,662,902 (-)	NCBI		T2T-CHM13v2.0

Brap
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	121,798,626 - 121,825,312 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	121,798,626 - 121,825,319 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	121,660,563 - 121,687,249 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	121,660,563 - 121,687,256 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	122,110,595 - 122,137,257 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	121,921,203 - 121,947,865 (+)	NCBI		MGSCv36	mm8
Celera	5	118,750,469 - 118,777,666 (+)	NCBI		Celera
Cytogenetic Map	5	F	NCBI
cM Map	5	61.9	NCBI

Brap
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	40,535,232 - 40,561,726 (-)	NCBI		GRCr8
mRatBN7.2	12	34,874,533 - 34,901,030 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	34,874,533 - 34,901,030 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	36,047,411 - 36,073,910 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	36,658,624 - 36,685,121 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	35,711,077 - 35,737,572 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	40,381,892 - 40,417,764 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	40,383,577 - 40,417,654 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	42,253,695 - 42,285,637 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	12	36,539,105 - 36,565,594 (-)	NCBI		Celera
Cytogenetic Map	12	q16	NCBI

Brap
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955482	8,254,709 - 8,282,416 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955482	8,254,709 - 8,282,416 (-)	NCBI	ChiLan1.0	ChiLan1.0

BRAP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	119,710,107 - 119,757,195 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	119,706,496 - 119,753,586 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	109,216,171 - 109,263,160 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	112,610,179 - 112,654,017 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	112,610,179 - 112,654,017 (-)	Ensembl	panpan1.1		panPan2

Brap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	155,185,318 - 155,219,571 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936558	4,259,799 - 4,294,191 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936558	4,259,854 - 4,294,131 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BRAP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	32,800,749 - 32,841,743 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	32,800,742 - 32,841,884 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

BRAP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	106,899,512 - 106,938,606 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	138,157,078 - 138,202,510 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Brap
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	20,526,321 - 20,558,040 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	20,526,216 - 20,557,019 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in BRAP
262 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005636238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014108029	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022410290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022410291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038436694	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038436695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038436696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038436697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038436698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038511611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038511612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038511613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038511614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038511615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038575101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038575102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038575103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038575104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038575105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038639289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038639290	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038639291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038639292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038639293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_543397	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000375	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000026	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000013670 ⟹ ENSCAFP00000012643

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	26	9,224,077 - 9,251,003 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845053321 ⟹ ENSCAFP00845041879

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	26	9,481,418 - 9,510,461 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845053336 ⟹ ENSCAFP00845041894

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	26	9,481,512 - 9,510,448 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845053351 ⟹ ENSCAFP00845041908

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	26	9,485,700 - 9,510,461 (-)	Ensembl

RefSeq Acc Id:

XM_038436694 ⟹ XP_038292622

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	26	9,483,009 - 9,510,397 (-)	NCBI

RefSeq Acc Id:

XM_038436695 ⟹ XP_038292623

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	26	9,483,009 - 9,510,399 (-)	NCBI

RefSeq Acc Id:

XM_038436696 ⟹ XP_038292624

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	26	9,485,784 - 9,510,403 (-)	NCBI

RefSeq Acc Id:

XM_038436697 ⟹ XP_038292625

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	26	9,485,780 - 9,510,405 (-)	NCBI

RefSeq Acc Id:

XM_038436698 ⟹ XP_038292626

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	26	9,483,690 - 9,510,400 (-)	NCBI

RefSeq Acc Id:

XM_038511611 ⟹ XP_038367539

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	26	9,439,088 - 9,466,131 (-)	NCBI

RefSeq Acc Id:

XM_038511612 ⟹ XP_038367540

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	26	9,439,088 - 9,466,133 (-)	NCBI

RefSeq Acc Id:

XM_038511613 ⟹ XP_038367541

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	26	9,441,528 - 9,466,137 (-)	NCBI

RefSeq Acc Id:

XM_038511614 ⟹ XP_038367542

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	26	9,441,524 - 9,466,139 (-)	NCBI

RefSeq Acc Id:

XM_038511615 ⟹ XP_038367543

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	26	9,439,439 - 9,466,134 (-)	NCBI

RefSeq Acc Id:

XM_038575101 ⟹ XP_038431029

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	26	9,454,886 - 9,481,932 (-)	NCBI

RefSeq Acc Id:

XM_038575102 ⟹ XP_038431030

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	26	9,454,886 - 9,481,934 (-)	NCBI

RefSeq Acc Id:

XM_038575103 ⟹ XP_038431031

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	26	9,457,328 - 9,481,938 (-)	NCBI

RefSeq Acc Id:

XM_038575104 ⟹ XP_038431032

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	26	9,457,324 - 9,481,940 (-)	NCBI

RefSeq Acc Id:

XM_038575105 ⟹ XP_038431033

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	26	9,455,237 - 9,481,935 (-)	NCBI

RefSeq Acc Id:

XM_038639289 ⟹ XP_038495217

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	26	9,499,992 - 9,528,867 (-)	NCBI

RefSeq Acc Id:

XM_038639290 ⟹ XP_038495218

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	26	9,499,992 - 9,528,869 (-)	NCBI

RefSeq Acc Id:

XM_038639291 ⟹ XP_038495219

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	26	9,504,353 - 9,528,873 (-)	NCBI

RefSeq Acc Id:

XM_038639292 ⟹ XP_038495220

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	26	9,504,349 - 9,528,875 (-)	NCBI

RefSeq Acc Id:

XM_038639293 ⟹ XP_038495221

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	26	9,502,266 - 9,528,870 (-)	NCBI

RefSeq Acc Id:

XM_543397 ⟹ XP_543397

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	26	9,223,929 - 9,250,981 (-)	NCBI
Dog10K_Boxer_Tasha	26	9,384,554 - 9,413,441 (-)	NCBI

Sequence:

show sequence

CGGAGGGTTGCTCGCGGAGCTGCTGCTACGGAGGCCCCCGGGAGGCAGCGGCGGCGGCGCTGAG
GCGGTGGCAGCGCTGCCGACCCTGGGCCGCTCGGCCTCTCAGCTGTCCTGCCAGCCTCGCCTGA
GCCCGCCGGGGCCCGCGCCGGCCAGCGCCTGCCCTATGAGTGTGTCACTGGTTGTCATCCGACT
GGAGCTTGCGGAACACTCGCCGGTCCCCGCCGGCTTCGGCTTCAGCGCCGCGGCTGGGGAAATG
TCTGATGAGGAAATCAAAAAGAAGACACTAGCTTCAGCTGTAGCCTCTTTAGAAGGGAAGTCAC
CAGGAGAGAAAGCAGCAATCATACATCAGCATCTTGGTCGTCGAGAAATGACAGATATGATCAT
TGAGACCATGAAGTCCAACCCAGATGAGCTGAAAGCCACAATGGAAGAAAGGAAGTCTTCAGAA
GTATCTCCCACTGCACAGAGAAGTAAAGATCAAAGTATAGAATGCATAAACGCTGCTCCCGATT
CTCCATCCAAACAGCTTCCAGACCAGATTTCGTTCTTTAGTGGAAACCCGTCAGTTGAAATAGT
TCATGGTATTATGCATCTATACAAGACAAATAAGATGACCTCCTTAAAAGAAGATGTGAGGCGC
AGTGCCATGCTGTGTATTCTCACAGTCCCTGCTACAATGACCAGTCATGACCTTATGAAGTTTG
TCGCCCCATTTAATGAAGTAATTGAACAAATGAAAATCATCAGAGACTCTACTCCAAATCAATA
TATGGTGCTGATAAAGTTTAGTGCACAGGCTGATGCAGATAGTTTTTATATGGCGTGCAATGGC
CGCCAGTTCAACTCAATAGAAGATGATGTTTGCCAGCTGGTGTATGTGGAAAGGGCTGAAGTAC
TGAAATCTGAAGATGGCGCCAGCCTCCCCGTGATGGACCTGACTGAGCTCCCCAAGTGCACAGT
GTGTCTGGAGCGTATGGACGAGTCCGTGAATGGCATCCTCACCACGTTATGTAACCACAGCTTC
CACAGCCAGTGCCTGCAGCGCTGGGACGACACCACGTGTCCTGTCTGCCGGTACTGCCAAACGC
CAGAGCCAGTAGAAGAGAATAAGTGTTTTGAGTGTGGTGTGCAGGAAAACCTATGGATTTGCTT
GATATGTGGCCACATAGGATGTGGACGGTATGTAAGTCGACATGCTTATAAGCACTTTGAGGAA
ACGCAGCACACATATGCCATGCAGCTCACCAACCATCGAGTCTGGGACTATGCCGGAGATAACT
ATGTCCATCGACTGGTTGCAAGTAAAACAGATGGGAAAATAGTACAGTATGAATGTGAGGGTGA
TACTTGCCAGGAAGAGAAAATAGATGCCTTACAGTTAGAGTATTCGTATTTACTAACAAGCCAG
CTGGAATCTCAGCGAATCTACTGGGAAAACAAGATAGTTCGGATAGAGAAGGACACAGCAGAGG
AAATTAACAACATGAAGACCAAATTTAAAGAAACAATTGAGAAATGTGATAATCTGGAGCACAG
ACTAAATGATCTCCTAAAGGAAAAGCAGTCTGTGGAAAGAAAGTGCACTCAACTAAACATGAAG
GTGGCCAAACTCACCACAGAGCTCAAAGAGGAGCAGGAAATGAACAAGTGTTTGCGAGCCAACC
AAGTCCTCCTGCAGAACAAACTAAAGGAGGAGGAGAGGGTGTTGAAGGAGACCTGTGACCAGAA
GGATCTACAGATCACCGAGATCCAGGAGCAGCTGCGTGATGTCATGTTCTACCTAGAGGCCCAG
CAGAAGATCAACCACCTGCCGGCCGAGACCAGGCAGGAAATACAGGAAGGACAGATCAACATTG
CCATGGCCTCGGCCTCCAGCCCCGCTTCCTCAGGGGGCAGTGGGAAGCTGCCCTCCAGGAAAGG
CCGCAGCAAGAGGGGCAAATGACCTCTGGGAAACGGGTGTCCCTGAGACTGTTTTCCCTGGCAC
AGCAAGGGCATGCTGGGGCTTCAGCTAAATGTGAGAGTGGGCCGTCAATAAGTACCAGTGAGGA
TGGAGCCGCCGTGGTTTGGACCTTTTCTTTGCTAGTGTGTGG

hide sequence

Protein Sequences


Protein RefSeqs	XP_038292622	(Get FASTA)	NCBI Sequence Viewer
	XP_038292623	(Get FASTA)	NCBI Sequence Viewer
	XP_038292624	(Get FASTA)	NCBI Sequence Viewer
	XP_038292625	(Get FASTA)	NCBI Sequence Viewer
	XP_038292626	(Get FASTA)	NCBI Sequence Viewer
	XP_038367539	(Get FASTA)	NCBI Sequence Viewer
	XP_038367540	(Get FASTA)	NCBI Sequence Viewer
	XP_038367541	(Get FASTA)	NCBI Sequence Viewer
	XP_038367542	(Get FASTA)	NCBI Sequence Viewer
	XP_038367543	(Get FASTA)	NCBI Sequence Viewer
	XP_038431029	(Get FASTA)	NCBI Sequence Viewer
	XP_038431030	(Get FASTA)	NCBI Sequence Viewer
	XP_038431031	(Get FASTA)	NCBI Sequence Viewer
	XP_038431032	(Get FASTA)	NCBI Sequence Viewer
	XP_038431033	(Get FASTA)	NCBI Sequence Viewer
	XP_038495217	(Get FASTA)	NCBI Sequence Viewer
	XP_038495218	(Get FASTA)	NCBI Sequence Viewer
	XP_038495219	(Get FASTA)	NCBI Sequence Viewer
	XP_038495220	(Get FASTA)	NCBI Sequence Viewer
	XP_038495221	(Get FASTA)	NCBI Sequence Viewer
	XP_543397	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000012643.4
	ENSCAFP00030034490.1
	ENSCAFP00040035098.1
	ENSCAFP00845041879
	ENSCAFP00845041879.1
	ENSCAFP00845041894
	ENSCAFP00845041894.1
	ENSCAFP00845041908
	ENSCAFP00845041908.1

RefSeq Acc Id:	XP_543397 ⟸ XM_543397
- Peptide Label:	isoform X1
- UniProtKB:	A0A8P0SDP8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSVSLVVIRLELAEHSPVPAGFGFSAAAGEMSDEEIKKKTLASAVASLEGKSPGEKAAIIHQHL GRREMTDMIIETMKSNPDELKATMEERKSSEVSPTAQRSKDQSIECINAAPDSPSKQLPDQISF FSGNPSVEIVHGIMHLYKTNKMTSLKEDVRRSAMLCILTVPATMTSHDLMKFVAPFNEVIEQMK IIRDSTPNQYMVLIKFSAQADADSFYMACNGRQFNSIEDDVCQLVYVERAEVLKSEDGASLPVM DLTELPKCTVCLERMDESVNGILTTLCNHSFHSQCLQRWDDTTCPVCRYCQTPEPVEENKCFEC GVQENLWICLICGHIGCGRYVSRHAYKHFEETQHTYAMQLTNHRVWDYAGDNYVHRLVASKTDG KIVQYECEGDTCQEEKIDALQLEYSYLLTSQLESQRIYWENKIVRIEKDTAEEINNMKTKFKET IEKCDNLEHRLNDLLKEKQSVERKCTQLNMKVAKLTTELKEEQEMNKCLRANQVLLQNKLKEEE RVLKETCDQKDLQITEIQEQLRDVMFYLEAQQKINHLPAETRQEIQEGQINIAMASASSPASSG GSGKLPSRKGRSKRGK hide sequence

Ensembl Acc Id:

ENSCAFP00000012643 ⟸ ENSCAFT00000013670

RefSeq Acc Id:	XP_038367540 ⟸ XM_038511612
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038367539 ⟸ XM_038511611
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038367543 ⟸ XM_038511615
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038367542 ⟸ XM_038511614
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038367541 ⟸ XM_038511613
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038495218 ⟸ XM_038639290
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038495217 ⟸ XM_038639289
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038495221 ⟸ XM_038639293
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038495220 ⟸ XM_038639292
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038495219 ⟸ XM_038639291
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038292623 ⟸ XM_038436695
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I3QLZ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038292622 ⟸ XM_038436694
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0TCH9 (UniProtKB/TrEMBL), A0A8I3Q6Y7 (UniProtKB/TrEMBL), A0A8P0SDP8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038292626 ⟸ XM_038436698
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038292625 ⟸ XM_038436697
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038292624 ⟸ XM_038436696
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I3SCJ8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038431030 ⟸ XM_038575102
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I3QLZ0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038431029 ⟸ XM_038575101
- Peptide Label:	isoform X1
- UniProtKB:	A0A8C0TCH9 (UniProtKB/TrEMBL), A0A8I3Q6Y7 (UniProtKB/TrEMBL), A0A8P0SDP8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038431033 ⟸ XM_038575105
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038431032 ⟸ XM_038575104
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038431031 ⟸ XM_038575103
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I3SCJ8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845041894 ⟸ ENSCAFT00845053336

Ensembl Acc Id:

ENSCAFP00845041908 ⟸ ENSCAFT00845053351

Ensembl Acc Id:

ENSCAFP00845041879 ⟸ ENSCAFT00845053321

Protein Domains

RING-type UBP-type

Promoters

RGD ID:

13687903

Promoter ID:

EPDNEW_C5971

Type:

initiation region

Name:

BRAP_1

Description:

BRCA1 associated protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	26	9,251,007 - 9,251,067	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000008615	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030021545	UniProtKB/TrEMBL
	ENSCAFG00040021671	UniProtKB/TrEMBL
	ENSCAFG00845030089	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000013670.5	UniProtKB/TrEMBL
	ENSCAFT00030039527.1	UniProtKB/TrEMBL
	ENSCAFT00040040216.1	UniProtKB/TrEMBL
	ENSCAFT00845053321	ENTREZGENE
	ENSCAFT00845053321.1	UniProtKB/TrEMBL
	ENSCAFT00845053336	ENTREZGENE
	ENSCAFT00845053336.1	UniProtKB/TrEMBL
	ENSCAFT00845053351	ENTREZGENE
	ENSCAFT00845053351.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.40.10	UniProtKB/TrEMBL
	3.30.70.330	UniProtKB/TrEMBL
InterPro	BRAP2	UniProtKB/TrEMBL
	BRAP2_RRM	UniProtKB/TrEMBL
	Nucleotide-bd_a/b_plait_sf	UniProtKB/TrEMBL
	RBD_domain_sf	UniProtKB/TrEMBL
	RING-H2_BRAP2	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_UBP	UniProtKB/TrEMBL
KEGG Report	cfa:486271	UniProtKB/TrEMBL
NCBI Gene	BRAP	ENTREZGENE
PANTHER	BRCA1-ASSOCIATED PROTEIN	UniProtKB/TrEMBL
	BRCA1-ASSOCIATED PROTEIN	UniProtKB/TrEMBL
Pfam	BRAP2	UniProtKB/TrEMBL
	zf-RING_2	UniProtKB/TrEMBL
	zf-UBP	UniProtKB/TrEMBL
PROSITE	ZF_RING_2	UniProtKB/TrEMBL
	ZF_UBP	UniProtKB/TrEMBL
SMART	RING	UniProtKB/TrEMBL
	ZnF_UBP	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	SSF54928	UniProtKB/TrEMBL
UniProt	A0A8C0TCH9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3Q6Y7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3QLZ0	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3SCJ8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0SDP8	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:38515	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD