S100A3 (S100 calcium binding protein A3) - Rat Genome Database

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Gene: S100A3 (S100 calcium binding protein A3) Pan paniscus
Analyze
Symbol: S100A3
Name: S100 calcium binding protein A3
RGD ID: 12038801
Description: ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent protein binding (inferred); metal ion binding (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); MHC class II deficiency (ortholog); FOUND IN cytosol (inferred); Golgi apparatus (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,285,460 - 96,286,264 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,020,636 - 96,021,798 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,902,495 - 128,904,247 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,531,577 - 132,534,351 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,531,579 - 132,533,508 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
S100A3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2196,285,460 - 96,286,264 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1196,020,636 - 96,021,798 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01128,902,495 - 128,904,247 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11132,531,577 - 132,534,351 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1132,531,579 - 132,533,508 (-)Ensemblpanpan1.1panPan2
S100A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381153,547,329 - 153,549,258 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1153,547,329 - 153,549,258 (-)EnsemblGRCh38hg38GRCh38
GRCh371153,519,805 - 153,521,734 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361151,786,433 - 151,788,358 (-)NCBINCBI36Build 36hg18NCBI36
Build 341150,332,881 - 150,334,807NCBI
Celera1126,591,069 - 126,592,994 (-)NCBICelera
Cytogenetic Map1q21.3NCBI
HuRef1124,883,069 - 124,884,994 (-)NCBIHuRef
CHM1_11154,915,758 - 154,917,683 (-)NCBICHM1_1
T2T-CHM13v2.01152,684,585 - 152,686,514 (-)NCBIT2T-CHM13v2.0
S100a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39390,467,571 - 90,510,922 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl390,491,966 - 90,510,009 (+)EnsemblGRCm39 Ensembl
GRCm38390,560,356 - 90,602,706 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl390,584,659 - 90,602,702 (+)EnsemblGRCm38mm10GRCm38
MGSCv37390,404,137 - 90,406,624 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36390,686,142 - 90,688,629 (+)NCBIMGSCv36mm8
Celera390,641,619 - 90,644,106 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map339.26NCBI
S100a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82178,331,856 - 178,387,280 (+)NCBIGRCr8
mRatBN7.22176,034,283 - 176,089,702 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2176,049,520 - 176,089,702 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2183,227,105 - 183,229,888 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02181,249,373 - 181,252,156 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02175,849,243 - 175,852,020 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02189,955,619 - 189,996,029 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2189,955,836 - 189,996,029 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02209,407,859 - 209,430,124 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42182,881,054 - 182,883,821 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12182,831,159 - 182,833,927 (+)NCBI
Celera2170,021,662 - 170,024,429 (+)NCBICelera
Cytogenetic Map2q34NCBI
S100a3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955545195,779 - 205,471 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955545195,834 - 205,442 (-)NCBIChiLan1.0ChiLan1.0
S100A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1743,490,128 - 43,492,383 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha742,984,445 - 42,985,336 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0743,441,207 - 43,442,098 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl743,440,733 - 43,445,796 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1743,143,728 - 43,144,618 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0743,197,372 - 43,198,263 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0743,480,985 - 43,481,876 (+)NCBIUU_Cfam_GSD_1.0
S100a3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505824,328,830 - 24,330,919 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365803,359,188 - 3,360,594 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365803,359,247 - 3,360,226 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S100A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl496,084,088 - 96,086,827 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1496,084,049 - 96,086,829 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24104,912,470 - 104,915,251 (-)NCBISscrofa10.2Sscrofa10.2susScr3
S100A3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12010,249,332 - 10,256,671 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2010,255,515 - 10,256,318 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660389,645,450 - 9,648,204 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
S100a3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248853,585,111 - 3,589,138 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248853,572,419 - 3,588,121 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034936008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000050088   ⟹   ENSPPAP00000027248
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1132,531,579 - 132,533,508 (-)Ensembl
RefSeq Acc Id: XM_034936008   ⟹   XP_034791899
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2196,285,460 - 96,286,264 (+)NCBI
NHGRI_mPanPan1196,020,636 - 96,021,798 (+)NCBI
Mhudiblu_PPA_v01128,902,495 - 128,904,247 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034791899 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000027248.1
RefSeq Acc Id: XP_034791899   ⟸   XM_034936008
- UniProtKB: A0A2R9BC96 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSPPAP00000027248   ⟸   ENSPPAT00000050088
Protein Domains
S100/CaBP-9k-type calcium binding subdomain


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036692 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000050088.1 UniProtKB/TrEMBL
Gene3D-CATH EF-hand UniProtKB/TrEMBL
InterPro EF-hand-dom_pair UniProtKB/TrEMBL
  S-100_dom UniProtKB/TrEMBL
  S100/CaBP-9k_CS UniProtKB/TrEMBL
  S100_Ca-bd_sub UniProtKB/TrEMBL
NCBI Gene S100A3 ENTREZGENE
PANTHER PTHR11639:SF12 UniProtKB/TrEMBL
  S100 CALCIUM-BINDING PROTEIN UniProtKB/TrEMBL
Pfam S_100 UniProtKB/TrEMBL
PROSITE S100_CABP UniProtKB/TrEMBL
SMART S_100 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A2R9BC96 ENTREZGENE, UniProtKB/TrEMBL