SAC3D1 (SAC3 domain containing 1) - Rat Genome Database

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Gene: SAC3D1 (SAC3 domain containing 1) Pan paniscus
Analyze
Symbol: SAC3D1
Name: SAC3 domain containing 1
RGD ID: 12037548
Description: INVOLVED IN centrosome duplication (ortholog); negative regulation of receptor signaling pathway via JAK-STAT (ortholog); regulation of immune response (ortholog); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); glycogen storage disease V (ortholog); intellectual disability (ortholog); FOUND IN centrosome (ortholog); microtubule cytoskeleton (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: SAC3 domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,267,723 - 66,271,658 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,310,596 - 67,314,627 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,397,122 - 60,401,157 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,737,026 - 63,740,463 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SAC3D1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2966,267,723 - 66,271,658 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,310,596 - 67,314,627 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,397,122 - 60,401,157 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,737,026 - 63,740,463 (+)NCBIpanpan1.1PanPan1.1panPan2
SAC3D1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381165,040,933 - 65,044,828 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1165,040,901 - 65,044,828 (+)EnsemblGRCh38hg38GRCh38
GRCh371164,808,405 - 64,812,300 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,564,952 - 64,568,876 (+)NCBINCBI36Build 36hg18NCBI36
Celera1162,134,308 - 62,138,231 (+)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1161,135,200 - 61,139,127 (+)NCBIHuRef
CHM1_11164,692,083 - 64,695,988 (+)NCBICHM1_1
T2T-CHM13v2.01165,034,212 - 65,038,110 (+)NCBIT2T-CHM13v2.0
Sac3d1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,166,025 - 6,168,689 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl196,166,030 - 6,168,680 (-)EnsemblGRCm39 Ensembl
GRCm38196,116,004 - 6,118,586 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,116,000 - 6,118,650 (-)EnsemblGRCm38mm10GRCm38
MGSCv37196,116,004 - 6,118,586 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36196,115,904 - 6,118,586 (-)NCBIMGSCv36mm8
Celera195,988,544 - 5,991,126 (-)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.34NCBI
Sac3d1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81212,843,463 - 212,845,842 (-)NCBIGRCr8
mRatBN7.21203,414,184 - 203,416,563 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1203,414,187 - 203,416,604 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,768,301 - 211,770,660 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01218,859,535 - 218,861,914 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,550,599 - 211,552,978 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,484,210 - 221,486,669 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,484,316 - 221,486,633 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,418,537 - 228,421,158 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41208,889,495 - 208,891,944 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11209,043,044 - 209,045,397 (-)NCBI
Celera1200,947,845 - 200,950,304 (-)NCBICelera
Cytogenetic Map1q43NCBI
Sac3d1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,146,465 - 20,148,913 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,146,359 - 20,149,152 (-)NCBIChiLan1.0ChiLan1.0
SAC3D1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,148,661 - 52,151,920 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,148,723 - 52,151,603 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,756,188 - 50,759,646 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,189,701 - 53,193,151 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,189,968 - 53,192,852 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11852,284,892 - 52,288,348 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01851,858,952 - 51,862,584 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,653,997 - 52,657,639 (-)NCBIUU_Cfam_GSD_1.0
Sac3d1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049477,874,139 - 7,876,941 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,313,222 - 4,319,394 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,316,488 - 4,319,700 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAC3D1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,138,413 - 7,141,898 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,138,409 - 7,142,294 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,270,452 - 6,273,970 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SAC3D1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,189,576 - 9,193,737 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038106,572,953 - 106,576,870 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sac3d1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,354,530 - 21,356,596 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,354,485 - 21,356,791 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_034932968   ⟹   XP_034788859
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,267,723 - 66,271,658 (+)NCBI
NHGRI_mPanPan11167,310,704 - 67,314,627 (+)NCBI
Mhudiblu_PPA_v01160,397,229 - 60,401,157 (+)NCBI
RefSeq Acc Id: XM_034932969   ⟹   XP_034788860
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,267,731 - 66,271,658 (+)NCBI
NHGRI_mPanPan11167,310,596 - 67,314,627 (+)NCBI
Mhudiblu_PPA_v01160,397,129 - 60,401,150 (+)NCBI
RefSeq Acc Id: XM_063608560   ⟹   XP_063464630
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2966,267,730 - 66,269,997 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034788859 (Get FASTA)   NCBI Sequence Viewer  
  XP_034788860 (Get FASTA)   NCBI Sequence Viewer  
  XP_063464630 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_034788860   ⟸   XM_034932969
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034788859   ⟸   XM_034932968
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063464630   ⟸   XM_063608560
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
NCBI Gene SAC3D1 ENTREZGENE