ZSCAN31 (zinc finger and SCAN domain containing 31) - Rat Genome Database

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Gene: ZSCAN31 (zinc finger and SCAN domain containing 31) Pan paniscus
Analyze
Symbol: ZSCAN31
Name: zinc finger and SCAN domain containing 31
RGD ID: 12033012
Description: ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN regulation of gene expression (inferred); ASSOCIATED WITH lung non-small cell carcinoma (ortholog); megacolon (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC100994386; zinc finger and SCAN domain-containing protein 31; zinc finger and SCAN domain-containing protein 31 pseudogene
RGD Orthologs
Human
Chinchilla
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,930,318 - 42,976,131 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,946,918 - 38,977,073 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0628,132,429 - 28,162,551 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,803,694 - 28,815,136 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ZSCAN31
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2542,930,318 - 42,976,131 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1638,946,918 - 38,977,073 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0628,132,429 - 28,162,551 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1628,803,694 - 28,815,136 (-)NCBIpanpan1.1PanPan1.1panPan2
ZSCAN31
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38628,324,737 - 28,356,271 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl628,324,693 - 28,356,271 (-)EnsemblGRCh38hg38GRCh38
GRCh37628,292,514 - 28,324,048 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36628,400,493 - 28,429,951 (-)NCBINCBI36Build 36hg18NCBI36
Celera629,898,957 - 29,930,489 (-)NCBICelera
Cytogenetic Map6p22.1NCBI
HuRef628,099,777 - 28,111,415 (-)NCBIHuRef
CHM1_1628,294,899 - 28,306,537 (-)NCBICHM1_1
T2T-CHM13v2.0628,196,485 - 28,227,848 (-)NCBIT2T-CHM13v2.0
Zscan31
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546513,668,045 - 13,668,893 (-)NCBIChiLan1.0ChiLan1.0
ZSCAN31
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13525,454,984 - 25,465,762 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3525,453,942 - 25,466,468 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3525,313,125 - 25,323,882 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03525,753,442 - 25,764,191 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3525,753,719 - 25,764,648 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13525,416,598 - 25,428,423 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03525,470,629 - 25,481,369 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03526,939,784 - 26,951,614 (-)NCBIUU_Cfam_GSD_1.0
ZSCAN31
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl722,173,457 - 22,181,192 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1722,173,459 - 22,181,784 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZSCAN31
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366604428,019,915 - 28,047,401 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_008955056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008955057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008955058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961649 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034961653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055113287 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057302453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057302454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_057302455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063605223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010112403 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_034961651   ⟹   XP_034817542
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,976,130 (-)NCBI
NHGRI_mPanPan1638,946,918 - 38,977,073 (-)NCBI
Mhudiblu_PPA_v0628,132,429 - 28,162,550 (-)NCBI
RefSeq Acc Id: XM_034961652   ⟹   XP_034817543
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,976,108 (-)NCBI
NHGRI_mPanPan1638,946,918 - 38,977,067 (-)NCBI
Mhudiblu_PPA_v0628,132,429 - 28,162,546 (-)NCBI
RefSeq Acc Id: XM_034961653   ⟹   XP_034817544
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,976,108 (-)NCBI
NHGRI_mPanPan1638,946,918 - 38,977,067 (-)NCBI
Mhudiblu_PPA_v0628,132,429 - 28,162,546 (-)NCBI
RefSeq Acc Id: XM_055113284   ⟹   XP_054969259
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,976,129 (-)NCBI
NHGRI_mPanPan1638,946,918 - 38,977,072 (-)NCBI
RefSeq Acc Id: XM_055113285   ⟹   XP_054969260
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,976,131 (-)NCBI
NHGRI_mPanPan1638,946,918 - 38,977,073 (-)NCBI
RefSeq Acc Id: XM_055113286   ⟹   XP_054969261
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,976,129 (-)NCBI
NHGRI_mPanPan1638,946,918 - 38,977,072 (-)NCBI
RefSeq Acc Id: XM_055113287   ⟹   XP_054969262
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,976,131 (-)NCBI
NHGRI_mPanPan1638,946,918 - 38,977,073 (-)NCBI
RefSeq Acc Id: XM_057302453   ⟹   XP_057158436
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,976,129 (-)NCBI
NHGRI_mPanPan1638,946,918 - 38,977,072 (-)NCBI
RefSeq Acc Id: XM_057302454   ⟹   XP_057158437
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,976,129 (-)NCBI
NHGRI_mPanPan1638,946,918 - 38,977,072 (-)NCBI
RefSeq Acc Id: XM_057302455   ⟹   XP_057158438
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,976,129 (-)NCBI
NHGRI_mPanPan1638,946,918 - 38,977,072 (-)NCBI
RefSeq Acc Id: XM_063605221   ⟹   XP_063461291
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,957,005 (-)NCBI
RefSeq Acc Id: XM_063605222   ⟹   XP_063461292
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,957,005 (-)NCBI
RefSeq Acc Id: XM_063605223   ⟹   XP_063461293
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,976,129 (-)NCBI
RefSeq Acc Id: XR_010112400
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,930,318 - 42,957,005 (-)NCBI
RefSeq Acc Id: XR_010112401
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,930,318 - 42,957,005 (-)NCBI
RefSeq Acc Id: XR_010112402
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,957,005 (-)NCBI
RefSeq Acc Id: XR_010112403
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2542,945,930 - 42,957,005 (-)NCBI
RefSeq Acc Id: XP_034817542   ⟸   XM_034961651
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034817544   ⟸   XM_034961653
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034817543   ⟸   XM_034961652
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054969260   ⟸   XM_055113285
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054969259   ⟸   XM_055113284
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054969262   ⟸   XM_055113287
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054969261   ⟸   XM_055113286
- Peptide Label: isoform X1
RefSeq Acc Id: XP_057158438   ⟸   XM_057302455
- Peptide Label: isoform X1
RefSeq Acc Id: XP_057158436   ⟸   XM_057302453
- Peptide Label: isoform X1
RefSeq Acc Id: XP_057158437   ⟸   XM_057302454
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063461293   ⟸   XM_063605223
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063461292   ⟸   XM_063605222
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063461291   ⟸   XM_063605221
- Peptide Label: isoform X1
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000027465 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000031099.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro GLI_C2H2-zinc-finger UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZSCAN31 ENTREZGENE
PANTHER ZINC FINGER PROTEIN 728-LIKE UniProtKB/TrEMBL
  ZINC FINGER PROTEIN ZIC AND GLI UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PRINTS ZINCFINGER UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A2R8ZZR3_PANPA UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-11 ZSCAN31  zinc finger and SCAN domain containing 31  LOC100994386  zinc finger and SCAN domain-containing protein 31 pseudogene  Data merged from RGD:11791502 737654 PROVISIONAL