TNFRSF17 (TNF receptor superfamily member 17)

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Gene: TNFRSF17 (TNF receptor superfamily member 17) Pan paniscus

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Symbol:

TNFRSF17

Name:

TNF receptor superfamily member 17

RGD ID:

12006888

Description:

ENCODES a protein that exhibits signaling receptor activity (inferred); INVOLVED IN lymphocyte homeostasis (ortholog); ASSOCIATED WITH colon carcinoma (ortholog); COVID-19 (ortholog); desmoplastic small round cell tumor (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

tumor necrosis factor receptor superfamily member 17

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	12,510,473 - 12,515,804 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	16,280,960 - 16,293,206 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	10,903,795 - 10,906,542 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	12,333,254 - 12,336,219 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	12,333,254 - 12,336,219 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

colon carcinoma (ISO)

COVID-19 (ISO)

desmoplastic small round cell tumor (ISO)

multiple myeloma (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

lymphocyte homeostasis (IEA,ISO)

tumor necrosis factor-mediated signaling pathway (IEA)

Cellular Component

membrane (IEA)

Molecular Function

protein binding (ISO)

signaling receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

TNFRSF17
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	18	12,510,473 - 12,515,804 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	16	16,280,960 - 16,293,206 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	16	10,903,795 - 10,906,542 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	16	12,333,254 - 12,336,219 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	16	12,333,254 - 12,336,219 (+)	Ensembl	panpan1.1		panPan2

TNFRSF17
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	16	11,965,210 - 11,968,068 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	16	11,965,210 - 11,968,068 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	16	12,059,067 - 12,061,925 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	16	11,966,465 - 11,969,426 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	16	11,966,464 - 11,969,426	NCBI
Celera	16	12,233,004 - 12,235,957 (+)	NCBI		Celera
Cytogenetic Map	16	p13.13	NCBI
HuRef	16	11,974,961 - 11,977,914 (+)	NCBI		HuRef
CHM1_1	16	12,059,016 - 12,061,977 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	16	12,001,328 - 12,004,186 (+)	NCBI		T2T-CHM13v2.0

Tnfrsf17
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	11,131,131 - 11,137,938 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	11,131,676 - 11,137,938 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	11,313,232 - 11,320,074 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	11,313,812 - 11,320,074 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	11,313,902 - 11,320,161 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	11,227,387 - 11,233,646 (+)	NCBI		MGSCv36	mm8
Celera	16	11,945,271 - 11,951,530 (+)	NCBI		Celera
Cytogenetic Map	16	A1	NCBI
cM Map	16	6.42	NCBI

Tnfrsf17
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	4,808,023 - 4,813,857 (-)	NCBI		GRCr8
mRatBN7.2	10	4,301,023 - 4,306,889 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	4,301,038 - 4,306,788 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	8,997,717 - 9,003,465 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	8,518,792 - 8,524,540 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	4,157,040 - 4,162,788 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	4,252,097 - 4,258,335 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	4,251,941 - 4,257,868 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	3,118,168 - 3,123,990 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	4,187,672 - 4,193,420 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	4,187,670 - 4,249,349 (-)	NCBI
Celera	10	3,324,770 - 3,330,518 (-)	NCBI		Celera
Cytogenetic Map	10	q11	NCBI

Tnfrsf17
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955442	6,626,399 - 6,629,931 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955442	6,626,434 - 6,651,193 (-)	NCBI	ChiLan1.0	ChiLan1.0

TNFRSF17
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	30,842,269 - 30,846,124 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	30,841,152 - 30,845,905 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	32,222,917 - 32,226,766 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	31,020,231 - 31,024,149 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	31,019,743 - 31,024,148 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	30,834,283 - 30,838,159 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	30,708,920 - 30,712,730 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	31,132,189 - 31,135,999 (-)	NCBI		UU_Cfam_GSD_1.0

Tnfrsf17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	112,750,164 - 112,812,235 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936501	907,009 - 909,878 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936501	907,059 - 910,084 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TNFRSF17
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	31,137,682 - 31,141,735 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	31,137,672 - 31,141,862 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	32,122,943 - 32,130,379 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TNFRSF17
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	5	11,435,306 - 11,438,573 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	5	11,435,842 - 11,438,351 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666068	18,695,580 - 18,698,526 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tnfrsf17
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624782	6,338,087 - 6,341,090 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624782	6,337,914 - 6,375,242 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003832693	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000046985 ⟹ ENSPPAP00000024160

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	16	12,333,254 - 12,336,219 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000046987 ⟹ ENSPPAP00000024162

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	16	12,333,472 - 12,335,998 (+)	Ensembl

RefSeq Acc Id:

XM_003832693 ⟹ XP_003832741

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	18	12,510,473 - 12,515,804 (+)	NCBI
NHGRI_mPanPan1	16	16,280,960 - 16,293,206 (+)	NCBI
Mhudiblu_PPA_v0	16	10,903,795 - 10,906,542 (+)	NCBI
PanPan1.1	16	12,333,254 - 12,336,219 (+)	NCBI

Sequence:

show sequence

AAGACTCAAACTTAGAAACTTGAATTAGATGTGGTATTCAAATCCTTAGCTGCCGCGAAGACAC
AGACGGCCCCCGTAAGAACCCACGAAGCAGGCGAAGTTCATTGTTCTCAACATTCTAGCTGCTC
TTGCTGCATTTGCTCTGGAATTCTTGTAGAGATATTACTTGTCCTTCCAGGCTGTTCTTTCTGT
AGCTCCCTTGTTTTCTTTTTGTGATCATGTTGCAGATGGCTGGGCAGTGCTCCCAAAATGAATA
TTTTGACAGTTTGTTGCATGCTTGCATACCTTGTCAACTTCGATGTTCTTCTAATACTCCTCCT
CTAACATGTCAGCGTTATTGTAATGCAAGTGTGACCAATTCAGTGAAAGGAACGAATGCGATTC
TCTGGACCTGTTTGGGACTGAGCTTAATAATTTCTTTGGCAGTTTTCGTGCTAATGTTTTTGCT
AAGGAAGATAAGCTCTGAACCATTAAAGGACGAGTTTAAAAACACAGGATCAGGTTTCCTGGGC
ATGGCTAACATTGACCTGGAAAAGAGCAGGACTGGTGATGAAATTATTCTTCCGAGAGGCCTCG
AGTACACGGTGGAAGAATGCACCTGTGAAGACTGCATCAAGAGCAAACCGAAGGTCGACTCTGA
CCATTGCTTTCCACTCCCAGCTATGGAGGAAGGCGCAACCATTCTTGTCACCACGAAAACGAAT
GACTATTGCAAGAGCCTGCCAGCTGCTTTGAGTGCTACGGAGATAGAGAAATCAATTTCTGCTA
GGTAATTAACCATTTCGACTCGAGCAGTGCCACTTTAAAAATCTTTTGTCGGAATAGATGATGT
GTCAGATCTCCTTAGGATGACTGTATTTTTCAGTTGCCGATACAGCTTTTTGTCCTCTAACCGT
GGAAACTCTTTATGTTAGATATATTTCTCTAGGTTACTGTTGGGAGCTTAATGGTAGAAACTTC
CTTTGTTTCATGATTAAACTCTTTTTTTTCCTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003832741	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000024160
	ENSPPAP00000024160.1
	ENSPPAP00000024162.1

RefSeq Acc Id:	XP_003832741 ⟸ XM_003832693
- UniProtKB:	A0A2R9B7E5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLQMAGQCSQNEYFDSLLHACIPCQLRCSSNTPPLTCQRYCNASVTNSVKGTNAILWTCLGLSL IISLAVFVLMFLLRKISSEPLKDEFKNTGSGFLGMANIDLEKSRTGDEIILPRGLEYTVEECTC EDCIKSKPKVDSDHCFPLPAMEEGATILVTTKTNDYCKSLPAALSATEIEKSISAR hide sequence

Ensembl Acc Id:

ENSPPAP00000024162 ⟸ ENSPPAT00000046987

Ensembl Acc Id:

ENSPPAP00000024160 ⟸ ENSPPAT00000046985

Protein Domains

BCMA TALL-1 binding

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000035220	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000046985.1	UniProtKB/TrEMBL
	ENSPPAT00000046987.1	UniProtKB/TrEMBL
Gene3D-CATH	Tumor necrosis factor receptor superfamily	UniProtKB/TrEMBL
InterPro	BCMA_Tall-1-bd	UniProtKB/TrEMBL
	TNFR_13C/17	UniProtKB/TrEMBL
	TNFR_17	UniProtKB/TrEMBL
KEGG Report	pps:100990622	UniProtKB/TrEMBL
NCBI Gene	TNFRSF17	ENTREZGENE
PANTHER	PTHR20437	UniProtKB/TrEMBL
	TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER 17	UniProtKB/TrEMBL
Pfam	BCMA-Tall_bind	UniProtKB/TrEMBL
PIRSF	BCMA_Tall-1_bd	UniProtKB/TrEMBL
PRINTS	TNFACTORR17	UniProtKB/TrEMBL
Superfamily-SCOP	TNF receptor-like	UniProtKB/TrEMBL
UniProt	A0A2R9B3I6_PANPA	UniProtKB/TrEMBL
	A0A2R9B7E5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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