ZNF658 (zinc finger protein 658) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: ZNF658 (zinc finger protein 658) Pan paniscus
Analyze
Symbol: ZNF658
Name: zinc finger protein 658
RGD ID: 12000382
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN cellular response to zinc ion (inferred); negative regulation of DNA-templated transcription (inferred); positive regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH skin disease (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21185,485,380 - 85,506,402 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1985,491,382 - 85,512,344 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0938,535,161 - 38,556,153 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A41,108,258 - 41,143,292 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A41,108,936 - 41,140,460 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
skin disease  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ZNF658
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21185,485,380 - 85,506,402 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1985,491,382 - 85,512,344 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0938,535,161 - 38,556,153 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A41,108,258 - 41,143,292 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A41,108,936 - 41,140,460 (-)Ensemblpanpan1.1panPan2
ZNF658
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38966,900,725 - 66,932,141 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl966,856,426 - 66,932,141 (+)EnsemblGRCh38hg38GRCh38
GRCh37940,760,700 - 40,792,116 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36940,761,402 - 40,782,112 (-)NCBINCBI36Build 36hg18NCBI36
Build 34940,500,695 - 40,521,346NCBI
Celera939,737,402 - 39,740,723 (+)NCBICelera
Cytogenetic Map9q21.11NCBI
CHM1_1940,783,254 - 40,803,951 (-)NCBICHM1_1
T2T-CHM13v2.0978,672,849 - 78,704,251 (+)NCBIT2T-CHM13v2.0
Znf658
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542224,194,458 - 24,218,504 (+)NCBIChiLan1.0ChiLan1.0
LOC491382
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1169,663,288 - 69,691,171 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha170,440,943 - 70,468,283 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0169,894,034 - 69,921,437 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1169,768,640 - 69,796,001 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0169,538,956 - 69,566,335 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0170,248,414 - 70,275,785 (+)NCBIUU_Cfam_GSD_1.0
Znf658
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049447,278,444 - 7,293,098 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364871,492,904 - 1,507,449 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364871,494,915 - 1,509,548 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZNF658
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1038,797,315 - 38,818,047 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11038,797,314 - 38,818,459 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZNF658
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112105,381,826 - 105,402,567 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12105,389,572 - 105,401,659 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603893,714,799 - 93,735,630 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000045693   ⟹   ENSPPAP00000022879
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A41,108,936 - 41,140,460 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000045696   ⟹   ENSPPAP00000022882
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2A41,108,936 - 41,127,576 (-)Ensembl
RefSeq Acc Id: XM_034967459   ⟹   XP_034823350
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21185,485,380 - 85,506,402 (+)NCBI
NHGRI_mPanPan1985,491,385 - 85,512,344 (+)NCBI
Mhudiblu_PPA_v0938,535,161 - 38,556,120 (-)NCBI
RefSeq Acc Id: XM_034967460   ⟹   XP_034823351
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21185,485,380 - 85,506,402 (+)NCBI
NHGRI_mPanPan1985,491,382 - 85,512,344 (+)NCBI
Mhudiblu_PPA_v0938,535,161 - 38,556,153 (-)NCBI
RefSeq Acc Id: XM_034967461   ⟹   XP_034823352
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21185,485,380 - 85,506,402 (+)NCBI
NHGRI_mPanPan1985,491,387 - 85,512,344 (+)NCBI
Mhudiblu_PPA_v0938,535,161 - 38,556,124 (-)NCBI
RefSeq Acc Id: XM_034967462   ⟹   XP_034823353
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21185,485,380 - 85,506,402 (+)NCBI
NHGRI_mPanPan1985,491,387 - 85,512,344 (+)NCBI
Mhudiblu_PPA_v0938,535,161 - 38,556,124 (-)NCBI
RefSeq Acc Id: XM_055092001   ⟹   XP_054947976
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21185,485,801 - 85,506,402 (+)NCBI
NHGRI_mPanPan1985,491,743 - 85,512,344 (+)NCBI
RefSeq Acc Id: XM_063594008   ⟹   XP_063450078
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21185,485,381 - 85,506,402 (+)NCBI
RefSeq Acc Id: XM_063594009   ⟹   XP_063450079
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21185,485,380 - 85,506,402 (+)NCBI
RefSeq Acc Id: XP_034823351   ⟸   XM_034967460
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034823353   ⟸   XM_034967462
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034823352   ⟸   XM_034967461
- Peptide Label: isoform X1
RefSeq Acc Id: XP_034823350   ⟸   XM_034967459
- Peptide Label: isoform X1
Ensembl Acc Id: ENSPPAP00000022879   ⟸   ENSPPAT00000045693
Ensembl Acc Id: ENSPPAP00000022882   ⟸   ENSPPAT00000045696
RefSeq Acc Id: XP_054947976   ⟸   XM_055092001
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063450079   ⟸   XM_063594009
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063450078   ⟸   XM_063594008
- Peptide Label: isoform X1
Protein Domains
C2H2-type   KRAB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034612 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045693.1 UniProtKB/TrEMBL
  ENSPPAT00000045696.1 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.140 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro KRAB UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/TrEMBL
  Krueppel_C2H2_ZnFinger UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene ZNF658 ENTREZGENE
PANTHER FI01424P-RELATED UniProtKB/TrEMBL
  IP01015P-RELATED UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 471 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
PROSITE KRAB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART KRAB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt A0A2R9AZW3_PANPA UniProtKB/TrEMBL
  A0A2R9B3Z6_PANPA UniProtKB/TrEMBL