ITLN2 (intelectin 2) - Rat Genome Database

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Gene: ITLN2 (intelectin 2) Pan paniscus
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Symbol: ITLN2
Name: intelectin 2
RGD ID: 11976603
Description: ENCODES a protein that exhibits carbohydrate binding (inferred); metal ion binding (inferred); oligosaccharide binding (inferred); ASSOCIATED WITH autoimmune interstitial lung, joint, and kidney disease (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: intelectin-2
RGD Orthologs
Human
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2188,904,942 - 88,916,186 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1188,586,327 - 88,597,571 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01136,349,475 - 136,359,719 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11140,273,094 - 140,283,092 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,273,094 - 140,282,905 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ITLN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2188,904,942 - 88,916,186 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1188,586,327 - 88,597,571 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01136,349,475 - 136,359,719 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11140,273,094 - 140,283,092 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,273,094 - 140,282,905 (-)Ensemblpanpan1.1panPan2
ITLN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381160,945,025 - 160,954,809 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1160,945,025 - 160,954,809 (-)EnsemblGRCh38hg38GRCh38
GRCh371160,914,815 - 160,924,599 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,181,440 - 159,191,213 (-)NCBINCBI36Build 36hg18NCBI36
Build 341157,727,888 - 157,737,662NCBI
Celera1133,983,011 - 133,992,784 (-)NCBICelera
Cytogenetic Map1q23.3NCBI
HuRef1132,271,178 - 132,280,947 (-)NCBIHuRef
CHM1_11162,310,206 - 162,319,979 (-)NCBICHM1_1
T2T-CHM13v2.01160,082,115 - 160,094,468 (-)NCBIT2T-CHM13v2.0
LOC110260310
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,500,624 - 89,637,483 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1489,593,630 - 89,604,819 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000036927   ⟹   ENSPPAP00000014247
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1140,273,094 - 140,282,905 (-)Ensembl
RefSeq Acc Id: XM_003811861   ⟹   XP_003811909
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2188,904,942 - 88,916,186 (+)NCBI
NHGRI_mPanPan1188,586,327 - 88,597,571 (+)NCBI
Mhudiblu_PPA_v01136,349,475 - 136,359,719 (-)NCBI
PanPan1.11140,273,094 - 140,283,092 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003811909 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000014247
  ENSPPAP00000014247.1
RefSeq Acc Id: XP_003811909   ⟸   XM_003811861
- UniProtKB: A0A2R9AFY3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000014247   ⟸   ENSPPAT00000036927
Protein Domains
Fibrinogen C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000030282 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000036927.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.215.10 UniProtKB/TrEMBL
InterPro Fibrinogen-like_C UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_1 UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_dom UniProtKB/TrEMBL
KEGG Report pps:100986733 UniProtKB/TrEMBL
NCBI Gene ITLN2 ENTREZGENE
PANTHER INTELECTIN UniProtKB/TrEMBL
  INTELECTIN-2 UniProtKB/TrEMBL
PROSITE FIBRINOGEN_C_2 UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
Superfamily-SCOP SSF56496 UniProtKB/TrEMBL
UniProt A0A2R9AFY3 ENTREZGENE, UniProtKB/TrEMBL