LOC100970180 (elongation factor 1-alpha 1-like) - Rat Genome Database

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Gene: LOC100970180 (elongation factor 1-alpha 1-like) Pan paniscus
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Symbol: LOC100970180
Name: elongation factor 1-alpha 1-like
RGD ID: 11968347
Description: ENCODES a protein that exhibits GTP binding (inferred); GTPase activity (inferred); translation elongation factor activity (inferred); INVOLVED IN translation (inferred); translational elongation (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: elongation factor 1-alpha 1 pseudogene
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X138,568,444 - 138,570,214 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X138,572,050 - 138,573,801 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X128,274,881 - 128,276,650 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X138,532,990 - 138,534,762 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034950187 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_034950187   ⟹   XP_034806078
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2X138,568,444 - 138,570,214 (+)NCBI
NHGRI_mPanPan1X138,572,050 - 138,573,801 (+)NCBI
Mhudiblu_PPA_v0X128,274,881 - 128,276,650 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034806078 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000016167.1
RefSeq Acc Id: XP_034806078   ⟸   XM_034950187
- UniProtKB: A0A2R9AFQ8 (UniProtKB/TrEMBL)
Protein Domains
tr-type G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031191 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000038860.1 UniProtKB/TrEMBL
Gene3D-CATH P-loop containing nucleotide triphosphate hydrolases UniProtKB/TrEMBL
  Translation factors UniProtKB/TrEMBL
InterPro EFTu-like_2 UniProtKB/TrEMBL
  GTP-eEF1A_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  T_Tr_GTP-bd_dom UniProtKB/TrEMBL
  TRAFAC_GTPase_members UniProtKB/TrEMBL
  Transl_B-barrel_sf UniProtKB/TrEMBL
  Transl_elong_EF1A/Init_IF2_C UniProtKB/TrEMBL
  Transl_elong_EF1A_euk/arc UniProtKB/TrEMBL
NCBI Gene LOC100970180 ENTREZGENE
PANTHER ELONGATION FACTOR 1-ALPHA 1-RELATED UniProtKB/TrEMBL
  TRANSLATION FACTOR UniProtKB/TrEMBL
Pfam GTP-eEF1A_C UniProtKB/TrEMBL
  GTP_EFTU UniProtKB/TrEMBL
  GTP_EFTU_D2 UniProtKB/TrEMBL
PRINTS ELONGATNFCT UniProtKB/TrEMBL
PROSITE G_TR_2 UniProtKB/TrEMBL
Superfamily-SCOP EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain UniProtKB/TrEMBL
  P-loop containing nucleoside triphosphate hydrolases UniProtKB/TrEMBL
  Translation proteins UniProtKB/TrEMBL
UniProt A0A2R9AFQ8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100970180  elongation factor 1-alpha 1-like  LOC100970180  elongation factor 1-alpha 1 pseudogene  Symbol and/or name change 5135510 APPROVED