HBQ1 (hemoglobin subunit theta 1) - Rat Genome Database

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Gene: HBQ1 (hemoglobin subunit theta 1) Pan paniscus
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Symbol: HBQ1
Name: hemoglobin subunit theta 1
RGD ID: 11967110
Description: ENCODES a protein that exhibits haptoglobin binding (inferred); heme binding (inferred); iron ion binding (inferred); INVOLVED IN cellular oxidant detoxification (inferred); hydrogen peroxide catabolic process (inferred); oxygen transport (inferred); ASSOCIATED WITH alpha thalassemia (ortholog); FOUND IN blood microparticle (inferred); haptoglobin-hemoglobin complex (inferred); hemoglobin complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hemoglobin subunit theta-1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218395,417 - 396,171 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,188,344 - 4,195,877 (+)NCBINHGRI_mPanPan1
PanPan1.116170,684 - 171,524 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16170,684 - 171,524 (+)Ensemblpanpan1.1panPan2


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HBQ1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v218395,417 - 396,171 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1164,188,344 - 4,195,877 (+)NCBINHGRI_mPanPan1
PanPan1.116170,684 - 171,524 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl16170,684 - 171,524 (+)Ensemblpanpan1.1panPan2
HBQ1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3816180,459 - 181,179 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl16180,459 - 181,179 (+)EnsemblGRCh38hg38GRCh38
GRCh3716230,458 - 231,178 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3616170,335 - 171,178 (+)NCBINCBI36Build 36hg18NCBI36
Build 3416170,334 - 171,178NCBI
Celera16429,850 - 430,693 (+)NCBICelera
Cytogenetic Map16p13.3NCBI
HuRef16148,375 - 149,220 (+)NCBIHuRef
CHM1_116230,340 - 231,185 (+)NCBICHM1_1
T2T-CHM13v2.016174,501 - 175,221 (+)NCBIT2T-CHM13v2.0
Hbq1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391132,236,964 - 32,237,912 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1132,236,965 - 32,237,784 (+)EnsemblGRCm39 Ensembl
GRCm381132,286,964 - 32,287,912 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1132,286,965 - 32,287,784 (+)EnsemblGRCm38mm10GRCm38
MGSCv371132,186,964 - 32,187,912 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361132,186,964 - 32,187,912 (+)NCBIMGSCv36mm8
Celera1134,704,307 - 34,705,255 (+)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1118.86NCBI
Hbq1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81015,838,752 - 15,840,074 (-)NCBIGRCr8
mRatBN7.21015,334,293 - 15,336,061 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1015,307,815 - 15,338,392 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1015,320,762 - 15,321,397 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01015,599,821 - 15,602,680 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1015,600,220 - 15,600,858 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01015,494,916 - 15,497,693 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41015,581,391 - 15,582,593 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1015,001,884 - 15,004,743 (-)NCBICelera
Cytogenetic Map10q12NCBI
Hbq1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544217,000,811 - 17,004,033 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544217,000,811 - 17,004,033 (-)NCBIChiLan1.0ChiLan1.0
HBQ1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha641,575,264 - 41,585,803 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0640,654,729 - 40,665,315 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1640,342,936 - 40,353,434 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0640,303,929 - 40,314,398 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0640,782,452 - 40,793,023 (-)NCBIUU_Cfam_GSD_1.0
Hbq1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344112,627,625 - 112,628,512 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936501725,483 - 726,665 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936501725,485 - 726,477 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HBQ1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl341,478,270 - 41,480,119 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1341,478,282 - 41,480,152 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2340,953,735 - 40,954,480 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HBQ1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.15133,766 - 134,752 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl5134,059 - 134,681 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236686382,968 - 3,706 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003809389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000049941   ⟹   ENSPPAP00000027105
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl16170,684 - 171,524 (+)Ensembl
RefSeq Acc Id: XM_003809389   ⟹   XP_003809437
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v218395,417 - 396,171 (+)NCBI
NHGRI_mPanPan1164,188,344 - 4,195,877 (+)NCBI
PanPan1.116170,684 - 171,524 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003809437 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000027105
  ENSPPAP00000027105.1
RefSeq Acc Id: XP_003809437   ⟸   XM_003809389
- UniProtKB: A0A2R9BK37 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000027105   ⟸   ENSPPAT00000049941
Protein Domains
GLOBIN


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000036628 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000049941.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.490.10 UniProtKB/TrEMBL
InterPro Globin UniProtKB/TrEMBL
  Globin-like_sf UniProtKB/TrEMBL
  Globin/Proto UniProtKB/TrEMBL
  Haemoglobin_a-typ UniProtKB/TrEMBL
  Haemoglobin_pi UniProtKB/TrEMBL
  Hemoglobin_oxygen_transport UniProtKB/TrEMBL
KEGG Report pps:100982813 UniProtKB/TrEMBL
NCBI Gene HBQ1 ENTREZGENE
PANTHER HEMOGLOBIN FAMILY MEMBER UniProtKB/TrEMBL
  HEMOGLOBIN SUBUNIT THETA-1 UniProtKB/TrEMBL
Pfam Globin UniProtKB/TrEMBL
PRINTS ALPHAHAEM UniProtKB/TrEMBL
  PIHAEM UniProtKB/TrEMBL
PROSITE GLOBIN UniProtKB/TrEMBL
Superfamily-SCOP SSF46458 UniProtKB/TrEMBL
UniProt A0A2R9BK37 ENTREZGENE, UniProtKB/TrEMBL