LOC100977980 (single-stranded DNA-binding protein 4-like) - Rat Genome Database

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Gene: LOC100977980 (single-stranded DNA-binding protein 4-like) Pan paniscus
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Symbol: LOC100977980
Name: single-stranded DNA-binding protein 4-like
RGD ID: 11965469
Description: ENCODES a protein that exhibits DNA binding (inferred); single-stranded DNA binding (inferred); INVOLVED IN positive regulation of transcription by RNA polymerase II (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: single-stranded DNA-binding protein 4 pseudogene
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21725,974,092 - 25,975,792 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11811,666,689 - 11,668,390 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0182,256,126 - 2,257,959 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1184,519,756 - 4,521,066 (+)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034944043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_034944043   ⟹   XP_034799934
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21725,974,092 - 25,975,792 (+)NCBI
NHGRI_mPanPan11811,666,689 - 11,668,390 (+)NCBI
Mhudiblu_PPA_v0182,256,126 - 2,257,959 (+)NCBI
Protein Sequences
Protein RefSeqs XP_034799934 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000003289.1
RefSeq Acc Id: XP_034799934   ⟸   XM_034944043
- UniProtKB: A0A2R8ZHP3 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000013827 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000015153.1 UniProtKB/TrEMBL
InterPro LisH UniProtKB/TrEMBL
  SSDP_DNA-bd UniProtKB/TrEMBL
NCBI Gene LOC100977980 ENTREZGENE
PANTHER SINGLE STRANDED DNA BINDING PROTEIN UniProtKB/TrEMBL
  SINGLE-STRANDED DNA-BINDING PROTEIN 4 UniProtKB/TrEMBL
Pfam SSDP UniProtKB/TrEMBL
PRINTS SSDNABINDING UniProtKB/TrEMBL
PROSITE LISH UniProtKB/TrEMBL
UniProt A0A2R8ZHP3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100977980  single-stranded DNA-binding protein 4-like  LOC100977980  single-stranded DNA-binding protein 4 pseudogene  Symbol and/or name change 5135510 APPROVED