CCDC183 (coiled-coil domain containing 183)

Advanced Search (OLGA)

Gene: CCDC183 (coiled-coil domain containing 183) Pan paniscus

Analyze

Symbol:

CCDC183

Name:

coiled-coil domain containing 183

RGD ID:

11944933

Description:

ASSOCIATED WITH Adams-Oliver Syndrome 5 (ortholog); autosomal dominant intellectual developmental disorder 8 (ortholog); autosomal dominant nocturnal frontal lobe epilepsy 5 (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 183

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	2,594,041 - 2,608,033 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	2,596,345 - 2,610,358 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	107,853,783 - 107,865,565 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	136,824,266 - 136,835,166 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	136,824,266 - 136,835,166 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Adams-Oliver Syndrome 5 (ISO)

autosomal dominant intellectual developmental disorder 8 (ISO)

autosomal dominant nocturnal frontal lobe epilepsy 5 (ISO)

developmental and epileptic encephalopathy 14 (ISO)

essential tremor (ISO)

Joubert syndrome 1 (ISO)

Kleefstra syndrome 1 (ISO)

Leigh disease (ISO)

primary coenzyme Q10 deficiency 7 (ISO)

Rafiq syndrome (ISO)

tuberous sclerosis 1 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

CCDC183
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	2,594,041 - 2,608,033 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	2,596,345 - 2,610,358 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	107,853,783 - 107,865,565 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	136,824,266 - 136,835,166 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	136,824,266 - 136,835,166 (+)	Ensembl	panpan1.1		panPan2

CCDC183
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	136,796,338 - 136,807,741 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	136,796,338 - 136,807,741 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	139,690,790 - 139,702,193 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	138,810,623 - 138,822,014 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	136,969,703 - 136,978,029	NCBI
Celera	9	110,204,424 - 110,215,961 (+)	NCBI		Celera
Cytogenetic Map	9	q34.3	NCBI
HuRef	9	109,149,676 - 109,161,483 (+)	NCBI		HuRef
CHM1_1	9	139,839,524 - 139,850,724 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	149,029,219 - 149,041,903 (+)	NCBI		T2T-CHM13v2.0

Ccdc183
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	25,498,641 - 25,507,690 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	25,498,647 - 25,507,690 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	25,608,629 - 25,617,678 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	25,608,635 - 25,617,678 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	25,464,149 - 25,473,198 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	25,430,499 - 25,439,668 (-)	NCBI		MGSCv36	mm8
Celera	2	25,336,828 - 25,345,950 (-)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	17.54	NCBI

Ccdc183
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	28,826,918 - 28,837,072 (-)	NCBI		GRCr8
mRatBN7.2	3	8,428,784 - 8,438,948 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	8,428,787 - 8,437,194 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	11,533,942 - 11,542,346 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	20,120,168 - 20,128,572 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	18,310,015 - 18,318,420 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	2,832,893 - 2,843,050 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	2,832,847 - 2,841,331 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	2,814,306 - 2,824,463 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	3,780,803 - 3,789,206 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	3,253,733 - 3,262,136 (-)	NCBI		Celera
Cytogenetic Map	3	p13	NCBI

Ccdc183
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	4,897,359 - 4,904,559 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955513	4,897,359 - 4,904,559 (+)	NCBI	ChiLan1.0	ChiLan1.0

CCDC183
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	48,768,012 - 48,775,191 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	47,981,625 - 47,988,820 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	49,646,181 - 49,653,357 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	9	48,422,269 - 48,429,493 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	48,720,963 - 48,728,165 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	48,767,947 - 48,775,157 (-)	NCBI		UU_Cfam_GSD_1.0

CCDC183
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa10.2	1	313,881,608 - 313,890,325 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC183
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	1,379,961 - 1,391,539 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666058	3,882,262 - 3,894,240 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc183
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	1,029,257 - 1,037,821 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	1,029,318 - 1,038,375 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008970094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034929568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034929569	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034929570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034929571	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000045855 ⟹ ENSPPAP00000023037

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	9	136,824,266 - 136,835,166 (+)	Ensembl

RefSeq Acc Id:

XM_008970094 ⟹ XP_008968342

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	11	2,594,041 - 2,608,033 (-)	NCBI
NHGRI_mPanPan1	9	2,596,345 - 2,610,358 (-)	NCBI
Mhudiblu_PPA_v0	9	107,853,783 - 107,865,565 (+)	NCBI
PanPan1.1	9	136,824,266 - 136,835,166 (+)	NCBI

Sequence:

show sequence

AAGCTGAGCCCAGGGAGGCTTTGAGGTACACAGGGTCCCTCGGGGGGCCTGAGAGCAGCCATGA
GGAGGCACAGTGAGACAGATGTGGAAGAGCAGACCCAGGAGCTGAAGACCATCACTCAGCTCCA
GGAGCAGTGTCGGGCACTCCAGATCCAAGGCGTGAAAGAGAATACGGACCAGAACAAGGCCACG
CTGGCCCTCCTGCGCAGCAACATCCGCCGCGGGGCCCAGGACTGGGCTTTGGCCAAGAAGTATG
ACCAGTGGACCATCTCCAAGGCCTGTGGGAAAAACTTGCCTTTGCGACTGGCGCACTGCCGCAG
CACCATGGAGGTGGTGCAGGAGAAGCTGCGCAAGTGCGTCTTCGACCGCGTGAACATGCACAAC
CTACTGATCCACCTGGTGCGGCGGCGCGGGCAGAAGCTGGAGAGCATGCAGCTGGAGCTGGCCA
GCCTGCGGAGCCAGCCCGACGCCAGCAAGGAGGAGCTGCGGCTGCTGCAGATCATCCGCCAGCT
GGAGAACAACATCGAGAAGACAATGATCAAGATCGTCACCAGCCAGAACATCCACCTGCTGTAT
TTGGACCTGCTGGATTATCTGAAGACAGTGCTGGCAGGATACCCCATTGAGCTGGACAAGCTGC
AGAACCTCGTGGTCAACTACTGCTCAGAGCTGTCGGATATGAAGATCATGTCCCAAGATGCCAT
GATGATCACGGATGGGGTCAAGAGGAACATGAGGCAAAGGGAGGCGTCCTTCATCGAGGAGCGC
CGGGCAAGGGAGAACCAGCTCAACCAGCAGAAGAAGCTGATCGACAAGATCCACTCGAAGGAGA
CCAGCGAGAAGTACCGCCGGGGCCAGATGGACTTGGACTTCCCCTCGAACCTGATGAGCACAGA
GACCCTGAAATTGAGGAGAAAAGAGACCTCCACAGGAGAAATGGAATACCAGGCGGGCGTGACT
GCTGTGGTGGAGAAGGTCAAGAGTGCTGTACGGTGCTCTCACGTCTGGGACATTGCTAGCCGCT
TCCTGGCCCAGAGGAACACGGAGGAGAACCTGGAGCTGCAGATGGAGGACTGTGAGGAGCGGCG
GGTGCAGCTGAAGGCCCTGGTGAAGCAGCTGGAGCTGGAGGAGGCCGTGCTCAAGTTCCGCCAG
AAGCCTAGCTCCATCAGCTTCAAGTCCGTTGAGAAGAAGATGACAGACATGCTAAAAGAGGAAG
AAGAGAGGCTCCAGCTGGCGCACAGCAACATGACCAAGGGCCAGGAGCTGCTGCTGACCATCCA
GATGGGCATCGACAACCTCTATGTCCGGCTGATGGGCATCACCTTGCCTGCGACCCAGAGAGAA
GTGGTGCTCTCCGACACCCTCGATTTGAACAGCAAGCTGGCGTACTGCGAGGGGAAGCTCACGT
ACCTGGCTGACAGAGTGCAGATGGTGTCCAGGACCGAGGAGGGCGACACAAAGGTGAGGGACAC
CCTGGAGTCCTCGACTCTGATGGAGAAGTACAACACTAGGATCAGCTTTGAGGACCGGGAGGAG
GATATGATCGACACCTTCCAGTTTGCCGACATGGACCACAGCTACGTCCCTTCGCGCGCCGAGA
TCAAGAGGCAGGCGCAGCGGCTAATCGAGGGGAAGCTCAAGGCGGCCAAGAAAAAGAAGAAGTA
GCCCCGCCGCCCCGCTCCCTGCTTTGCTACACAAATAAACATTTTTCCAGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_008968342	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000023037.1

RefSeq Acc Id:

XP_008968342 ⟸ XM_008970094

- UniProtKB:

A0A2R9B6T7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MRRHSETDVEEQTQELKTITQLQEQCRALQIQGVKENTDQNKATLALLRSNIRRGAQDWALAKK
YDQWTISKACGKNLPLRLAHCRSTMEVVQEKLRKCVFDRVNMHNLLIHLVRRRGQKLESMQLEL
ASLRSQPDASKEELRLLQIIRQLENNIEKTMIKIVTSQNIHLLYLDLLDYLKTVLAGYPIELDK
LQNLVVNYCSELSDMKIMSQDAMMITDGVKRNMRQREASFIEERRARENQLNQQKKLIDKIHSK
ETSEKYRRGQMDLDFPSNLMSTETLKLRRKETSTGEMEYQAGVTAVVEKVKSAVRCSHVWDIAS
RFLAQRNTEENLELQMEDCEERRVQLKALVKQLELEEAVLKFRQKPSSISFKSVEKKMTDMLKE
EEERLQLAHSNMTKGQELLLTIQMGIDNLYVRLMGITLPATQREVVLSDTLDLNSKLAYCEGKL
TYLADRVQMVSRTEEGDTKVRDTLESSTLMEKYNTRISFEDREEDMIDTFQFADMDHSYVPSRA
EIKRQAQRLIEGKLKAAKKKKK

hide sequence

Ensembl Acc Id:

ENSPPAP00000023037 ⟸ ENSPPAT00000045855

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000034695	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000045855.1	UniProtKB/TrEMBL
InterPro	CCDC183	UniProtKB/TrEMBL
KEGG Report	pps:100980528	UniProtKB/TrEMBL
NCBI Gene	CCDC183	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 183	UniProtKB/TrEMBL
	PTHR47115	UniProtKB/TrEMBL
UniProt	A0A2R9B6T7	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar