ELP6 (elongator acetyltransferase complex subunit 6) - Rat Genome Database

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Gene: ELP6 (elongator acetyltransferase complex subunit 6) Pan paniscus
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Symbol: ELP6
Name: elongator acetyltransferase complex subunit 6
RGD ID: 11941981
Description: INVOLVED IN apoptotic process (ortholog); autophagosome maturation (ortholog); autophagy (ortholog); ASSOCIATED WITH Progressive Microcephaly with Seizures and Cerebral and Cerebellar Atrophy (ortholog); FOUND IN cytosol (inferred); elongator holoenzyme complex (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: elongator complex protein 6; elongator complex protein 6 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2247,445,610 - 47,494,778 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1347,450,378 - 47,499,545 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0347,392,777 - 47,415,830 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1348,496,874 - 48,515,090 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl348,496,874 - 48,515,090 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ELP6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2247,445,610 - 47,494,778 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1347,450,378 - 47,499,545 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0347,392,777 - 47,415,830 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1348,496,874 - 48,515,090 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl348,496,874 - 48,515,090 (-)Ensemblpanpan1.1panPan2
ELP6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38347,495,640 - 47,513,712 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl347,495,640 - 47,513,712 (-)EnsemblGRCh38hg38GRCh38
GRCh37347,537,130 - 47,555,202 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36347,512,134 - 47,530,203 (-)NCBINCBI36Build 36hg18NCBI36
Celera347,478,723 - 47,497,105 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef347,582,616 - 47,600,625 (-)NCBIHuRef
CHM1_1347,487,037 - 47,505,103 (-)NCBICHM1_1
T2T-CHM13v2.0347,514,706 - 47,532,767 (-)NCBIT2T-CHM13v2.0
Elp6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399110,133,321 - 110,151,170 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9110,134,241 - 110,151,170 (+)EnsemblGRCm39 Ensembl
GRCm389110,304,398 - 110,322,102 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9110,305,173 - 110,322,102 (+)EnsemblGRCm38mm10GRCm38
MGSCv379110,207,696 - 110,224,606 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369110,150,340 - 110,167,271 (+)NCBIMGSCv36mm8
Celera9110,034,033 - 110,050,788 (+)NCBICelera
Cytogenetic Map9F2NCBI
cM Map959.91NCBI
Elp6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88119,158,380 - 119,173,483 (+)NCBIGRCr8
mRatBN7.28110,280,059 - 110,295,070 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8110,279,979 - 110,295,067 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8115,895,546 - 115,910,499 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08114,094,733 - 114,109,686 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08111,937,527 - 111,952,479 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08118,525,770 - 118,541,074 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8118,525,682 - 118,541,073 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08117,869,570 - 117,884,874 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48114,680,298 - 114,695,519 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18114,687,265 - 114,714,587 (+)NCBI
Celera8109,565,607 - 109,580,608 (+)NCBICelera
Cytogenetic Map8q32NCBI
Elp6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542024,795,496 - 24,811,134 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542024,795,416 - 24,807,790 (+)NCBIChiLan1.0ChiLan1.0
ELP6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12041,400,267 - 41,410,138 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2041,400,336 - 41,409,632 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2041,316,534 - 41,326,640 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02041,882,979 - 41,893,086 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2041,882,149 - 41,893,055 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12041,125,041 - 41,135,145 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02041,525,968 - 41,536,076 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02041,806,745 - 41,816,854 (+)NCBIUU_Cfam_GSD_1.0
Elp6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118201,638,263 - 201,656,130 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365961,184,314 - 1,205,377 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365961,187,402 - 1,205,277 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELP6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1330,325,249 - 30,341,295 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11330,329,815 - 30,341,952 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21333,560,676 - 33,572,506 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ELP6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1228,899,078 - 8,929,072 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666041158,202,826 - 158,223,351 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elp6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473073,910,405 - 73,926,844 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473073,910,843 - 73,923,273 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003818435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008971775 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034956323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034956324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034956325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034956327 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034956328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_034956329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055109816 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_055109817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063602300 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063602301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063602302 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063602303 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063602304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063602305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063602306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_008624732 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000057027   ⟹   ENSPPAP00000034146
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl348,496,874 - 48,515,090 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000057030   ⟹   ENSPPAP00000034149
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl348,496,874 - 48,515,044 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000057032   ⟹   ENSPPAP00000034151
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl348,505,050 - 48,506,135 (-)Ensembl
RefSeq Acc Id: XM_034956323   ⟹   XP_034812214
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2247,445,610 - 47,472,003 (-)NCBI
NHGRI_mPanPan1347,450,378 - 47,476,830 (-)NCBI
Mhudiblu_PPA_v0347,392,777 - 47,415,830 (-)NCBI
RefSeq Acc Id: XM_034956328   ⟹   XP_034812219
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2247,453,874 - 47,471,730 (-)NCBI
NHGRI_mPanPan1347,458,642 - 47,476,499 (-)NCBI
Mhudiblu_PPA_v0347,397,642 - 47,415,474 (-)NCBI
RefSeq Acc Id: XM_055109816   ⟹   XP_054965791
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2247,453,874 - 47,494,778 (-)NCBI
NHGRI_mPanPan1347,458,642 - 47,499,545 (-)NCBI
RefSeq Acc Id: XM_055109817   ⟹   XP_054965792
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2247,453,874 - 47,471,609 (-)NCBI
NHGRI_mPanPan1347,458,642 - 47,476,372 (-)NCBI
RefSeq Acc Id: XM_063602300   ⟹   XP_063458370
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2247,453,874 - 47,471,217 (-)NCBI
RefSeq Acc Id: XM_063602301   ⟹   XP_063458371
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2247,453,874 - 47,471,688 (-)NCBI
RefSeq Acc Id: XM_063602302   ⟹   XP_063458372
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2247,453,874 - 47,471,840 (-)NCBI
RefSeq Acc Id: XM_063602303   ⟹   XP_063458373
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2247,453,874 - 47,471,443 (-)NCBI
RefSeq Acc Id: XM_063602304   ⟹   XP_063458374
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2247,453,874 - 47,471,973 (-)NCBI
RefSeq Acc Id: XM_063602305   ⟹   XP_063458375
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2247,453,874 - 47,471,243 (-)NCBI
RefSeq Acc Id: XM_063602306   ⟹   XP_063458376
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2247,453,874 - 47,470,912 (-)NCBI
RefSeq Acc Id: XR_008624732
Type: NON-CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2247,445,610 - 47,472,003 (-)NCBI
NHGRI_mPanPan1347,450,378 - 47,476,830 (-)NCBI
RefSeq Acc Id: XP_034812214   ⟸   XM_034956323
- Peptide Label: isoform X2
RefSeq Acc Id: XP_034812219   ⟸   XM_034956328
- Peptide Label: isoform X6
Ensembl Acc Id: ENSPPAP00000034151   ⟸   ENSPPAT00000057032
Ensembl Acc Id: ENSPPAP00000034149   ⟸   ENSPPAT00000057030
Ensembl Acc Id: ENSPPAP00000034146   ⟸   ENSPPAT00000057027
RefSeq Acc Id: XP_054965791   ⟸   XM_055109816
- Peptide Label: isoform X1
- UniProtKB: A0A2R9BXF5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054965792   ⟸   XM_055109817
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063458374   ⟸   XM_063602304
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063458372   ⟸   XM_063602302
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063458371   ⟸   XM_063602301
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063458373   ⟸   XM_063602303
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063458375   ⟸   XM_063602305
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063458370   ⟸   XM_063602300
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063458376   ⟸   XM_063602306
- Peptide Label: isoform X6


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039928 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000057027.1 UniProtKB/TrEMBL
  ENSPPAT00000057030.1 UniProtKB/TrEMBL
  ENSPPAT00000057032.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro ELP6 UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report pps:100989486 UniProtKB/TrEMBL
NCBI Gene ELP6 ENTREZGENE
PANTHER ELONGATOR COMPLEX PROTEIN 6 UniProtKB/TrEMBL
  PTHR16184 UniProtKB/TrEMBL
Pfam ELP6 UniProtKB/TrEMBL
UniProt A0A2R9BXF5 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9BXG0_PANPA UniProtKB/TrEMBL
  A0A2R9C6H4_PANPA UniProtKB/TrEMBL