RBBP8NL (RBBP8 N-terminal like) - Rat Genome Database

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Gene: RBBP8NL (RBBP8 N-terminal like) Pan paniscus
Analyze
Symbol: RBBP8NL
Name: RBBP8 N-terminal like
RGD ID: 11926314
Description: ENCODES a protein that exhibits damaged DNA binding (inferred); INVOLVED IN DNA double-strand break processing involved in repair via single-strand annealing (inferred); ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 33 (ortholog); early infantile epileptic encephalopathy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22168,195,347 - 68,213,193 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12068,188,467 - 68,206,313 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02058,794,817 - 58,812,530 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12060,095,450 - 60,112,408 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2060,095,450 - 60,112,408 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
RBBP8NL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22168,195,347 - 68,213,193 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12068,188,467 - 68,206,313 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02058,794,817 - 58,812,530 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12060,095,450 - 60,112,408 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2060,095,450 - 60,112,408 (-)Ensemblpanpan1.1panPan2
RBBP8NL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,410,237 - 62,427,539 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2062,410,237 - 62,427,539 (-)EnsemblGRCh38hg38GRCh38
GRCh372060,985,293 - 61,002,595 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,418,688 - 60,435,984 (-)NCBINCBI36Build 36hg18NCBI36
Build 342060,418,687 - 60,435,984NCBI
Celera2057,720,567 - 57,737,891 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2057,762,499 - 57,780,051 (-)NCBIHuRef
CHM1_12060,886,494 - 60,903,721 (-)NCBICHM1_1
T2T-CHM13v2.02064,206,781 - 64,224,245 (-)NCBIT2T-CHM13v2.0
Rbbp8nl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392179,917,039 - 179,931,693 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2179,919,439 - 179,931,672 (-)EnsemblGRCm39 Ensembl
GRCm382180,275,246 - 180,289,900 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,277,646 - 180,289,879 (-)EnsemblGRCm38mm10GRCm38
MGSCv372180,012,351 - 180,024,584 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,207,054 - 180,219,287 (-)NCBIMGSCv36mm8
Celera2184,360,835 - 184,373,068 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2102.8NCBI
Rbbp8nl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,741,642 - 187,756,598 (-)NCBIGRCr8
mRatBN7.23167,364,048 - 167,378,993 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,364,048 - 167,379,092 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03175,646,786 - 175,661,377 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,645,281 - 175,654,707 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03181,452,607 - 181,468,506 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,332,148 - 169,344,771 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3165,201,478 - 165,216,074 (+)NCBICelera
Cytogenetic Map3q43NCBI
Rbbp8nl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,647,199 - 1,653,035 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555281,641,291 - 1,655,920 (+)NCBIChiLan1.0ChiLan1.0
RBBP8NL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,377,956 - 46,393,990 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,377,956 - 46,387,543 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2445,629,268 - 45,644,829 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,248,991 - 47,264,559 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,248,991 - 47,258,429 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,350,175 - 46,365,727 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,473,520 - 46,489,076 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,227,789 - 47,243,354 (-)NCBIUU_Cfam_GSD_1.0
Rbbp8nl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,560,849 - 194,569,986 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,017,821 - 10,023,590 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,016,227 - 10,023,590 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBBP8NL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1761,782,605 - 61,787,321 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11761,778,579 - 61,794,258 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21769,188,882 - 69,203,372 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBBP8NL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121,801,775 - 1,820,209 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21,811,379 - 1,819,724 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605049,752,718 - 49,761,974 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbbp8nl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,264,987 - 28,270,846 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474128,261,578 - 28,276,715 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003810826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000023004   ⟹   ENSPPAP00000005029
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2060,095,450 - 60,112,408 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000023012   ⟹   ENSPPAP00000005031
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2060,096,091 - 60,104,609 (-)Ensembl
RefSeq Acc Id: XM_003810826   ⟹   XP_003810874
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22168,195,347 - 68,213,193 (-)NCBI
NHGRI_mPanPan12068,188,467 - 68,206,313 (-)NCBI
Mhudiblu_PPA_v02058,794,817 - 58,812,530 (-)NCBI
PanPan1.12060,095,450 - 60,112,408 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003810874 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000005029
  ENSPPAP00000005029.1
  ENSPPAP00000005031.1
Reference Protein Sequences
RefSeq Acc Id: XP_003810874   ⟸   XM_003810826
- UniProtKB: A0A2R8ZK42 (UniProtKB/TrEMBL),   A0A2R8ZQD8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000005031   ⟸   ENSPPAT00000023012
RefSeq Acc Id: ENSPPAP00000005029   ⟸   ENSPPAT00000023004
Protein Domains
DNA endonuclease Ctp1 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000020970 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000023004.1 UniProtKB/TrEMBL
  ENSPPAT00000023012.1 UniProtKB/TrEMBL
InterPro CtIP_N UniProtKB/TrEMBL
  RBBP8-like UniProtKB/TrEMBL
KEGG Report pps:100989196 UniProtKB/TrEMBL
NCBI Gene RBBP8NL ENTREZGENE
PANTHER PTHR15107 UniProtKB/TrEMBL
  RBBP8 N-TERMINAL-LIKE PROTEIN UniProtKB/TrEMBL
Pfam CtIP_N UniProtKB/TrEMBL
UniProt A0A2R8ZK42 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZQD8 ENTREZGENE, UniProtKB/TrEMBL