RBBP8NL (RBBP8 N-terminal like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: RBBP8NL (RBBP8 N-terminal like) Pan paniscus
Analyze
Symbol: RBBP8NL
Name: RBBP8 N-terminal like
RGD ID: 11926314
Description: ASSOCIATED WITH developmental and epileptic encephalopathy (ortholog); developmental and epileptic encephalopathy 33 (ortholog); early infantile epileptic encephalopathy (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22168,195,347 - 68,213,193 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12068,188,467 - 68,206,313 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02058,794,817 - 58,812,530 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12060,095,450 - 60,112,408 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2060,095,450 - 60,112,408 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

Genomics

Comparative Map Data
RBBP8NL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22168,195,347 - 68,213,193 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12068,188,467 - 68,206,313 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02058,794,817 - 58,812,530 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12060,095,450 - 60,112,408 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2060,095,450 - 60,112,408 (-)Ensemblpanpan1.1panPan2
RBBP8NL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382062,410,237 - 62,427,539 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2062,410,237 - 62,427,539 (-)EnsemblGRCh38hg38GRCh38
GRCh372060,985,293 - 61,002,595 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362060,418,688 - 60,435,984 (-)NCBINCBI36Build 36hg18NCBI36
Build 342060,418,687 - 60,435,984NCBI
Celera2057,720,567 - 57,737,891 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2057,762,499 - 57,780,051 (-)NCBIHuRef
CHM1_12060,886,494 - 60,903,721 (-)NCBICHM1_1
T2T-CHM13v2.02064,206,781 - 64,224,245 (-)NCBIT2T-CHM13v2.0
Rbbp8nl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392179,917,039 - 179,931,693 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2179,919,439 - 179,931,672 (-)EnsemblGRCm39 Ensembl
GRCm382180,275,246 - 180,289,900 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,277,646 - 180,289,879 (-)EnsemblGRCm38mm10GRCm38
MGSCv372180,012,351 - 180,024,584 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,207,054 - 180,219,287 (-)NCBIMGSCv36mm8
Celera2184,360,835 - 184,373,068 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2102.8NCBI
Rbbp8nl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83187,741,642 - 187,756,598 (-)NCBIGRCr8
mRatBN7.23167,364,048 - 167,378,993 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,364,048 - 167,379,092 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.03175,646,786 - 175,661,377 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3175,645,281 - 175,654,707 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03181,452,607 - 181,468,506 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,332,148 - 169,344,771 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3165,201,478 - 165,216,074 (+)NCBICelera
Cytogenetic Map3q43NCBI
Rbbp8nl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555281,647,199 - 1,653,035 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555281,641,291 - 1,655,920 (+)NCBIChiLan1.0ChiLan1.0
RBBP8NL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,377,956 - 46,393,990 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2446,377,956 - 46,387,543 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2445,629,268 - 45,644,829 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,248,991 - 47,264,559 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2447,248,991 - 47,258,429 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12446,350,175 - 46,365,727 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02446,473,520 - 46,489,076 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02447,227,789 - 47,243,354 (-)NCBIUU_Cfam_GSD_1.0
Rbbp8nl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640194,560,849 - 194,569,986 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651410,017,821 - 10,023,590 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651410,016,227 - 10,023,590 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBBP8NL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1761,782,605 - 61,787,321 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11761,778,579 - 61,794,258 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21769,188,882 - 69,203,372 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RBBP8NL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121,801,775 - 1,820,209 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21,811,379 - 1,819,724 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605049,752,718 - 49,761,974 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbbp8nl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,264,987 - 28,270,846 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474128,261,578 - 28,276,715 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003810826 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000023004   ⟹   ENSPPAP00000005029
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2060,095,450 - 60,112,408 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000023012   ⟹   ENSPPAP00000005031
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl2060,096,091 - 60,104,609 (-)Ensembl
RefSeq Acc Id: XM_003810826   ⟹   XP_003810874
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v22168,195,347 - 68,213,193 (-)NCBI
NHGRI_mPanPan12068,188,467 - 68,206,313 (-)NCBI
Mhudiblu_PPA_v02058,794,817 - 58,812,530 (-)NCBI
PanPan1.12060,095,450 - 60,112,408 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003810874 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000005029
  ENSPPAP00000005029.1
  ENSPPAP00000005031.1
RefSeq Acc Id: XP_003810874   ⟸   XM_003810826
- UniProtKB: A0A2R8ZK42 (UniProtKB/TrEMBL),   A0A2R8ZQD8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000005031   ⟸   ENSPPAT00000023012
Ensembl Acc Id: ENSPPAP00000005029   ⟸   ENSPPAT00000023004
Protein Domains
DNA endonuclease Ctp1 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000020970 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000023004.1 UniProtKB/TrEMBL
  ENSPPAT00000023012.1 UniProtKB/TrEMBL
InterPro CtIP_N UniProtKB/TrEMBL
  RBBP8-like UniProtKB/TrEMBL
KEGG Report pps:100989196 UniProtKB/TrEMBL
NCBI Gene RBBP8NL ENTREZGENE
PANTHER PTHR15107 UniProtKB/TrEMBL
  RBBP8 N-TERMINAL-LIKE PROTEIN UniProtKB/TrEMBL
Pfam CtIP_N UniProtKB/TrEMBL
UniProt A0A2R8ZK42 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R8ZQD8 ENTREZGENE, UniProtKB/TrEMBL