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Gene: LOC100971599 (vomeronasal type-1 receptor 4) Pan paniscus

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Symbol:

LOC100971599

Name:

vomeronasal type-1 receptor 4

RGD ID:

11904090

Description:

ENCODES a protein that exhibits G protein-coupled receptor activity (inferred); pheromone receptor activity (inferred); INVOLVED IN G protein-coupled receptor signaling pathway (inferred); response to pheromone (inferred); sensory perception of chemical stimulus (inferred); FOUND IN membrane (inferred); plasma membrane (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	59,294,074 - 59,294,981 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	61,212,480 - 61,213,387 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	50,185,819 - 50,186,726 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	59,066,520 - 59,067,427 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

G protein-coupled receptor signaling pathway (IEA)

response to pheromone (IEA)

sensory perception of chemical stimulus (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IEA)

Molecular Function

G protein-coupled receptor activity (IEA)

pheromone receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LOC100971599
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	59,294,074 - 59,294,981 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	61,212,480 - 61,213,387 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	50,185,819 - 50,186,726 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	59,066,520 - 59,067,427 (-)	NCBI	panpan1.1	PanPan1.1	panPan2

VN1R4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	53,266,676 - 53,267,723 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	53,266,676 - 53,267,723 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	53,769,929 - 53,770,976 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	58,461,825 - 58,462,730 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	58,461,824 - 58,462,730	NCBI
Celera	19	50,811,899 - 50,812,804 (-)	NCBI		Celera
Cytogenetic Map	19	q13.42	NCBI
HuRef	19	50,090,647 - 50,091,552 (-)	NCBI		HuRef
CHM1_1	19	53,771,924 - 53,772,829 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	56,346,170 - 56,347,217 (-)	NCBI		T2T-CHM13v2.0

Vmn1r237
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	21,534,279 - 21,535,148 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	21,532,127 - 21,535,174 (+)	Ensembl		GRCm39 Ensembl
GRCm38	17	21,314,017 - 21,314,886 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	21,311,865 - 21,314,912 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	17	21,450,981 - 21,451,850 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	17	21,018,714 - 21,019,583 (+)	NCBI		MGSCv36	mm8
MGSCv36	17	20,370,997 - 20,371,866 (+)	NCBI		MGSCv36	mm8
Celera	7	145,993,369 - 145,994,238 (+)	NCBI		Celera
Cytogenetic Map	17	A3.2	NCBI
cM Map	17	11.4	NCBI

Vom1r21
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	69,636,830 - 69,637,753 (+)	NCBI		GRCr8
mRatBN7.2	1	60,963,939 - 60,964,862 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	60,961,052 - 60,970,529 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	19	28,377,249 - 28,378,118 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	19	28,377,249 - 28,378,118 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	19	39,317,209 - 39,318,078 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	58,877,734 - 58,878,603 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	58,880,678 - 58,881,548 (+)	NCBI
Celera	1	57,082,890 - 57,083,759 (+)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

VN1R4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	103,754,428 - 103,755,378 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	103,619,140 - 103,620,090 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	104,210,210 - 104,211,160 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	1	103,841,645 - 103,842,595 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	103,603,998 - 103,604,948 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	104,323,517 - 104,324,467 (+)	NCBI		UU_Cfam_GSD_1.0

LOC100624632
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	57,887,722 - 57,888,654 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	52,191,360 - 52,192,292 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008975609	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_008975609 ⟹ XP_008973857

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	59,294,074 - 59,294,981 (-)	NCBI
NHGRI_mPanPan1	19	61,212,480 - 61,213,387 (-)	NCBI
Mhudiblu_PPA_v0	19	50,185,819 - 50,186,726 (-)	NCBI
PanPan1.1	19	59,066,520 - 59,067,427 (-)	NCBI

Sequence:

show sequence

ATGGCCTCCCGGTATGTGGCAGTGGGAATGATCTTCTTATCACAGACCGTGGTGGGAGTCCTGG
GGAGCTTCTCTCTTCTTCTCCATTATCTCTCCTTCTACTGCACTGGGTGCAGGTTAAGGTCCAC
AGATTTGATTGTTAAGCGCTCGATTGTAGCCAACTTCTTAGCTCTCCTCTGTAAAGGAGTCCCC
CAGACAATGGCAGCTTTTGGGGTTAGATATTTTCTCAATGCTCTTGGGTGCAAACTTGTTTTCC
ATCTCCATAGAGTGGGCAGGGGAGTGTCCATTGGCACCACCTGCCTCTTGAGTGTCTTCCAGGT
GATCACGGTCAGCTCCAGGAAATCCAGGTGGGCAAAACTTAAAGAGAAAGCCCCCAAGCATGTT
GGCTTTTCTGTTCTCCTGTGCTGGATCGTGTGCATGTTGGTAAACATCATCTTTCCCACGTATG
TGACTGGCAAACGGAACTACACAAACATCACAGTGAACAAGGATTTGGGATACTGTTCTAGGGG
AGGCAACAACAAAATCGCACAGACACTGAGTGCAATGTTGTTATCATTCCCTGATGTGTTGTGT
CTGGGGCTCATGCTCTGGGCCAGCAGCTCCATGGTTTGCATCCTGCACAGGCACAAGCAGCAGG
TCCAGCACATTGATAGGAGCAATCTCTCCCCCAGAGCCTCCCCAGAGAACAGAGCTACGCAGAG
CATCCTCATCCTGGTGAGCACCTTTGTGTCTTCTTACACTCTCTCCTGCCTTTTCCAAGTTNTG
ATGGCTCTTTTGGATAATCCCAATAGTTTACTGGTGAACACTTCAGCCTTAATGAGTGTACGTT
TCCCAACTCTCAGCCCCTTTGTTCTCATGAGCTGTGACCCCAGTGTATACAGGTTTTGTTTTGC
CTGGAAAAGATGA

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Protein Sequences


Protein RefSeqs	XP_008973857	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000020655.1

RefSeq Acc Id:

XP_008973857 ⟸ XM_008975609

- UniProtKB:

A0A2R9AXV4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASRYVAVGMIFLSQTVVGVLGSFSLLLHYLSFYCTGCRLRSTDLIVKRSIVANFLALLCKGVP
QTMAAFGVRYFLNALGCKLVFHLHRVGRGVSIGTTCLLSVFQVITVSSRKSRWAKLKEKAPKHV
GFSVLLCWIVCMLVNIIFPTYVTGKRNYTNITVNKDLGYCSRGGNNKIAQTLSAMLLSFPDVLC
LGLMLWASSSMVCILHRHKQQVQHIDRSNLSPRASPENRATQSILILVSTFVSSYTLSCLFQVX
MALLDNPNSLLVNTSALMSVRFPTLSPFVLMSCDPSVYRFCFAWKR

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Protein Domains

G-protein coupled receptors family 1 profile

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000033542	UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000043451.1	UniProtKB/TrEMBL
Gene3D-CATH	Rhodopsin 7-helix transmembrane proteins	UniProtKB/TrEMBL
InterPro	GPCR_Rhodpsn_7TM	UniProtKB/TrEMBL
	Vmron_rcpt_1	UniProtKB/TrEMBL
NCBI Gene	LOC100971599	ENTREZGENE
PANTHER	VOMERONASAL TYPE-1 RECEPTOR	UniProtKB/TrEMBL
Pfam	V1R	UniProtKB/TrEMBL
PRINTS	VOMERONASL1R	UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F1_2	UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/TrEMBL
UniProt	A0A2R9AXV4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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