LOC100980724 (cyclic AMP-dependent transcription factor ATF-4-like) - Rat Genome Database

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Gene: LOC100980724 (cyclic AMP-dependent transcription factor ATF-4-like) Pan paniscus
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Symbol: LOC100980724
Name: cyclic AMP-dependent transcription factor ATF-4-like
RGD ID: 11895709
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN cellular response to glucose starvation (inferred); cellular response to leucine starvation (inferred); cellular response to oxidative stress (inferred); FOUND IN ATF1-ATF4 transcription factor complex (inferred); ATF4-CREB1 transcription factor complex (inferred); centrosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclic AMP-dependent transcription factor ATF-4 pseudogene
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21992,268,853 - 92,270,187 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11797,092,379 - 97,095,450 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01770,173,951 - 70,175,407 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11775,726,454 - 75,727,792 (-)NCBIpanpan1.1PanPan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_034942932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_034942932   ⟹   XP_034798823
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21992,268,853 - 92,270,187 (-)NCBI
NHGRI_mPanPan11797,092,379 - 97,095,450 (-)NCBI
Mhudiblu_PPA_v01770,173,951 - 70,175,407 (-)NCBI
Protein Sequences
Protein RefSeqs XP_034798823 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000033152.1
RefSeq Acc Id: XP_034798823   ⟸   XM_034942932
- UniProtKB: A0A2R9BU09 (UniProtKB/TrEMBL)
Protein Domains
bZIP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000039441 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000056022.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.5.170 UniProtKB/TrEMBL
InterPro bZIP UniProtKB/TrEMBL
  bZIP_sf UniProtKB/TrEMBL
NCBI Gene LOC100980724 ENTREZGENE
PANTHER ACTIVATING TRANSCRIPTION FACTOR ATF 4/5 UniProtKB/TrEMBL
  CYCLIC AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-4 UniProtKB/TrEMBL
Pfam bZIP_1 UniProtKB/TrEMBL
PROSITE BZIP UniProtKB/TrEMBL
  BZIP_BASIC UniProtKB/TrEMBL
SMART BRLZ UniProtKB/TrEMBL
Superfamily-SCOP Leucine zipper domain UniProtKB/TrEMBL
UniProt A0A2R9BU09 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-01 LOC100980724  cyclic AMP-dependent transcription factor ATF-4-like  LOC100980724  cyclic AMP-dependent transcription factor ATF-4 pseudogene  Symbol and/or name change 5135510 APPROVED